Helicobacter pylori F30: HPF30_1442
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Entry
HPF30_1442 CDS
T01895
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpf
Helicobacter pylori F30
Pathway
hpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPF30_1442 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpf03400
]
HPF30_1442 (mfd)
Enzymes [BR:
hpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPF30_1442 (mfd)
DNA repair and recombination proteins [BR:
hpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPF30_1442 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAJ57539
LinkDB
All DBs
Position
1536544..1539543
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYGALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDNECFKFLKVLENPQGYEDLEIHTHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYFGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEIFKSH
AGFEYTSDQEKAIAEISKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSTLVV
PTTLLAHQHFETLRVRFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAIFCAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELHRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINANESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKFSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatggagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagctttagaaaac
aagcaagaagcgatcattattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaagatttaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttgaacgaacaatct
tataaggatctgaaaaccaaagtagagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agcgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gataatgagtgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatacgcatgccttagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccac
attgaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgggatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattttggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaactaaagaccggctagggaaagggagttttctcaaactaaaagctaag
gttaagactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttggcggagttggaaatttttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agctctaaaagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtagcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcactctagtcgtg
cctactactttattagcgcaccagcattttgagactttaagggtgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctaattgatgtgcttgtaggcacgcatgcgattttttgcgcgaaattt
aaaaacttgggtttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcgctctctcaaattaaaggcattagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcaccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgccatt
ttgcattcccaaattaacgctaatgagagcgaagaaaccatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataatgcacaaaattttggactggctgatttgcaccaattaaga
gggcgtgtgggaagaggcaaaaaagaaggcttttgctatttccttatagaagatcaaaaa
agtttgaatgaacaggctttaaaacgcttgctcgctttggaaaaaaattcgtatttaggc
agtggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctcggg
caagatcagagcgggcatattaaaaatattggttatgcactctatacgcgcatgcttgaa
gatgcgatttatgaattgagtgggggtaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaagattctagccaaccagcttggcatcattaaattttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgtgctcaaatttctttaaagcggcactaa
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