Helicobacter pylori J99: jhp_1121
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Entry
jhp_1121 CDS
T00020
Symbol
rpoB
Name
(GenBank) DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hpj
Helicobacter pylori J99
Pathway
hpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
jhp_1121 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpj03021
]
jhp_1121 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpj03400
]
jhp_1121 (rpoB)
Enzymes [BR:
hpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
jhp_1121 (rpoB)
Transcription machinery [BR:
hpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
jhp_1121 (rpoB)
DNA repair and recombination proteins [BR:
hpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
jhp_1121 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb1_4
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AAD06699
UniProt:
Q9ZK23
LinkDB
All DBs
Position
complement(1246726..1255398)
Genome browser
AA seq
2890 aa
AA seq
DB search
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ
DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI
KEQSIFIREIPLMTERTSFIINGVERVVVNQLYRSPGVIFKEEESSTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYL
IPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLA
EPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFSADHESLKL
LKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHK
LGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGL
VKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKDRVGFEARDVHPTYYGQFGPIETPEGQNIGLINTLSTFTRVNDLGF
IEAPYKKVVDGKVAGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNE
KSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEK
IIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPI
VKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTS
THIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPK
GEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYE
EEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASIN
RFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKL
YIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQI
LEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEE
LLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG
YMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLK
EMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDG
APRPIMIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKI
FGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSL
PSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRY
EDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSG
NRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEII
VRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWEC
LQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVN
EIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVL
VDYVHKVGGIGITATFLDHLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKI
QQQYDQGLLTDQERYNKIIDTWTEVNDRMSKEMMSAIAKDKEGFNSIYMMADSGARGSAA
QIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNE
ILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAV
GVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNII
ANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAG
VGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAK
EKGVIKYYVLEANHLERTHGVKKGDIVSEKGLFAVVADDNGREAARHYIARGSEILIDDN
SEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVNFVDVIAGVTVAEKEDENTGIT
SLVVNDYIPSGYKPSLFLEGANGEEMRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKS
RDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRLTDYFV
DKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIAD
KHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENTRVIALKGEPAIAEPVLLGIT
RAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIV
LRALEDNSKF
NT seq
8673 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaaaattcccctaaaaaaccgcttgagagctgattttacaaaaaccccaaca
gatttagaagttcctaatttattattattgcaacgagacagctacgattctttcttgtat
tccaaagatggtaaagagagtgggattgaaaaggtttttaaatccattttccctatccaa
gatgagcataaccgcatcactttggaatacgcgggttgcgaatttggcaagtctaaatac
actgttagagaagcgatggagaggggcattacctactctatccccctcaaaattaaagtg
cgtttgatcttatgggaaaaagacaccaagagtggcgaaaagaacggcattaaggatatt
aaagagcaaagcattttcattcgtgagatccctttgatgacagaacgcacttcgtttatc
attaatggggtggagcgcgtggtggtcaatcagctctacagaagccccggtgtgattttt
aaagaagaagaatctagcacttcttcaaacaaactcatttacacaggacaaatcattcct
gataggggttcgtggctgtattttgaatacgattctaaagatgttttgtacgctcgtatc
aacaaacgccgtaaagtgcctgttaccattttattcagggcgatggattatcaaaaacaa
gacattatcaaaatgttctacccgcttgtgaaagtgcgttatgaaaacgataaatatttg
atcccgtttgcttcattagacgccaatcaaagaatggaatttgacttgaaagacccgcaa
ggcaagattatccttttggcgggtaaaaagctcacttcaaggaaaattaaagaacttaaa
gaaaaccatttagaatgggtggaataccctatggatattttactcaatcgtcatttagct
gagcctgttatggtagggaaagaagttttattggacatgctcacacagttggataaaaac
agactagaaaaaatccacgatctaggcgtgcaagaatttgtgatcatcaacgatttagcg
ttagggcatgacgcttccattatccattctttctcagccgatcatgagtctttgaaattg
ctcaagcaaactgaaaagattgatgatgaaaacgctctagcggcgattcgtatccataag
gttatgaaaccaggtgatcctgttacgactgaagtggctaagcaatttgttaagaaactt
ttctttgaccctgaacgctatgatttgaccatggtgggccgtatgaaaatgaatcacaag
ttaggcttgcatgtgcctgattacatcacgactttaacgcatgaagatattatcaccacc
gttaaatacctcatgaagatcaaaaacaatcagggcaagattgatgatagggatcactta
ggcaatcgcaggatcagagccgttggggaactattggccaatgaattgcattcaggctta
gtgaaaatgcaaaagaccattaaagacaaactcaccaccatgagcggggcttttgattcg
ctcatgccccatgatttagtcaattctaaaatgatcaccagcaccatcatggaatttttc
atgggcggtcagctctcgcaattcatggatcaaaccaaccctttgagtgaagttacgcac
aaacgacgcctttcagcgctcggtgaaggggggttagtcaaagacagggtagggtttgaa
gccagggatgtgcaccccacgtattatggccaatttggtcccattgaaaccccagaaggt
caaaatatcggtttgatcaacaccctttccactttcacaagagtgaatgatttaggcttt
attgaagccccttataaaaaggttgtggatggcaaggtggcgggcgagacgatttatttg
accgctattcaagaagacagccacatcatcgctcccgcaagcacccccattgatgaagaa
gggaatattttaggcgatttgattgaaacgcgagtggaaggcgagatcgttttaaacgaa
aagagtaaagttaccttaatggatctaagctctagcatgctagtaggggtagccgcatcg
ctcattcctttcttagagcatgatgacgctaaccgcgctctaatggggactaacatgcag
cgccaagccgtgcctttattaagaagcgacgcccccattgtaggcacagggattgaaaaa
attatcgctagggattcttggggagcgatcaaggccaatcgcgcaggcgttgtagaaaaa
attgattctaaaaacatttacattttaggcgaaggcaaagaagaagcctatattgacgcg
tattctttgcaaaaaaacttgcgcaccaaccaaaacaccagtttcaatcaagtccctatc
gttaaagtgggcgataaagtggaagccgggcaaatcatcgctgatggccctagcatggat
aggggcgagttagcgttagggaaaaatgtacgcgtggcgttcatgccttggaatggctat
aactttgaagacgcgatcgtggtgagtgagcgcatcactaaagacgatgttttcacttcc
acgcacatttatgaaaaagaagtggatgccagagagcttaagcatggcgtggaagaattt
accgctgatattcctgatgtgaaagaagaagcgctcgctcatcttgatgaaagcgggatc
gttaaagtcggcacttacgtgagcgctggcatgattttagtgggcaagacttctcctaaa
ggcgagattaaaagcacgcctgaagaacggctcttaagggctatttttggggataaagcc
gggcatgtggtcaataagagtttgtattgcccccccagtttggaaggcacggtgattgac
gtgaaggtcttcactaaaaaaggctatgagaaagacgcgcgggttttgagcgcgtatgaa
gaagaaaaagccaagcttgatatggagcattttgaccgcttgaccatgctcaatagagaa
gaattgttgcgcgttagctcgctcctttctcaagcgattttagaagagcctttcagccat
aatggcaaggattataaagaaggcgatcagatccctaaagaagaaatcgcttcaatcaac
cgcttcactttggctagcttagtcaaaaagtattctaaagaagtgcaaaaccactatgaa
atcactaaaaacaatttcttagagcaaaagaaagttttgggtgaagagcatgaagaaaag
ctctctattttagaaaaagatgatattttgcctaatggcgtgatcaaaaaagtcaagctc
tatatcgctacaaaacgaaagcttaaagtgggcgataaaatggcaggaaggcatgggaat
aaagggattgtgtctaatatcgtgccggttgcggatatgccttataccgctgatggcgag
cctgtggatattgtcttaaaccctttaggcgtgccaagccgcatgaacatcgggcagatt
ttagaaatgcatttaggcttagtggggaaagagtttgggaaacaaatcgctagcatgcta
gaggataaaaccaaagattttgccaaagaattacgcgctaaaatgctagaaatcgctaac
gccattaatgaaaaagaccccttgacaatccatgttcttgagaattgctctgatgaagag
cttttggaatacgctaaagattggagtaagggcgttaagatggctatccctgtgtttgaa
ggcatctcgcaagaaaaattttataagctgtttgagttagccaagatcgctatggatggc
aaaatggatctgtatgatgggcgcaccggcgaaaaaatgagggaacgcgtgaatgtgggc
tatatgtatatgatcaaactccaccatttagtggatgaaaaagtccatgccagaagcaca
ggcccttatagtttagtaacgcaccaacccgttgggggtaaagcgctctttgggggtcaa
aggtttggggaaatggaagtgtgggcgctagaagcttatggcgcagcgcacactctaaaa
gaaatgcttaccattaaatccgatgatattagaggcagagagaacgcttatagggctatc
gctaaaggtgagcaagtgggcgagagcgaaatccctgagactttctatgtcttgactaaa
gaattgcagtcgctcgctttggatattaatatttttggggacgatgtggatgaagatgga
gcgcctagacccattatgatcaaagaagatgacaggcctaaagactttagctctttccag
ctcactctagctagccctgaaaagatccattcttggagctatggggaagttaaaaagcca
gaaacgatcaattatcgcaccctaaaacctgaacgagacggcttgttttgcatgaaaatc
tttggccctactaaagattatgaatgcttgtgtggtaaatacaaaaagcctcgcttcaaa
gacattggcacatgcgaaaaatgcggcgtggcgatcacgcattctaaagtcaggcgtttt
agaatggggcatattgaattggccactcctgtagcgcatatttggtatgtcaattcctta
cctagccgtatcggcacgcttttaggcgttaagatgaaagacttagagcgcgtgttgtat
tatgaagcttatatcgttaaagagccaggcgaagccgcttatgacaatgaaggcactaag
cttgtgatgaaatacgatattttgaatgaagagcagtatcaaaatatctcacgaagatac
gaagataggggctttgtggcacaaatgggcggcgaagcgatcaaggatttgttagaagaa
attgatttgatcaccttattgcagagtttgaaagaagaagtgaaagacactaactctgat
gcgaaaaagaaaaaactcattaagcgtttgaaagtggtagaaagctttttaaattccggt
aacaggcctgaatggatgatgctcacggttttaccggtattgccaccagatttaaggcct
ttagtcgcgctagatggcgggaagtttgcggtcagcgatgtgaatgaattgtatcgtcgt
gtcatcaatcgtaaccaacgcttgaaacgcctaatggagcttggagcgccagaaatcatt
gtgcgcaatgaaaaaaggatgttgcaagaagccgtggatgtgctttttgataacggccgt
agcaccaatgcggttaaaggggctaacaaacggcctttaaaatcgctcagcgagatcatt
aaaggcaagcaagggcgtttcaggcaaaaccttttaggtaagcgcgtggatttttcaggc
agaagcgtgattgtggtggggcctaaccttaaaatggatgaatgcggattgcctaaaaac
atggcgttagaactcttcaaaccgcatctgttatccaagcttgaagagagaggctatgcc
accacgctcaaacaggctaaacgcatgattgagcaaaagagcaatgaagtgtgggagtgc
ttgcaagaaatcacagaggggtatccggtgctactcaaccgcgcccctaccttgcacaag
caatccattcaagcgttccatccaaagctcattgacggcaaagcgatccagttgcacccg
ttagtgtgctcagcgtttaacgctgattttgacggggatcaaatggcggtgcatgtgcct
ttaagccaggaagcgatcgctgaatgcaaggtgctcatgctaagctctatgaatatcctt
ttacccgctagcggtaaagccgtagccattcctagccaggatatggttttagggctttat
tatctttctttagaaaagagtggggtcaagggcgagcataagcttttctctagcgtgaat
gaaatcatcaccgctattgacacgaaagaattagacatccacgcaaagattagggttttg
gatcaagggaatattatcgctacgagcgcggggcgcatgatcatcaagtccattttgcct
gattttatccctacggatttgtggaacagacccatgaagaaaaaagatattggcgtgctt
gtggattatgtgcataaagtgggcggtatcggcattaccgcaacctttttggatcatttg
aaaacgcttggctttaggtatgcgactaaggctggtatttctatctctatggaagatatt
atcacgccaaaagacaagcaaaaaatggtggaaaaagccaaagtagaagttaaaaaaatc
caacaacaatacgatcaagggttgctcactgaccaagagcgttacaataaaatcattgac
acttggactgaagtcaatgacagaatgagtaaggaaatgatgagcgctatcgcaaaagat
aaagagggctttaactctatttatatgatggcggatagtggcgcaagggggagcgcggcg
caaatccgtcagctttcagcgatgagggggcttatgacaaagccggatggcagtatcatt
gaaacgcccattatttctaactttaaagaggggttgaatgtcttagaatactttaactcc
acgcatggcgctagaaagggcttagcggatacagcgctaaaaacagccaatgcagggtat
ttgacaagaaaactcattgacgtttcgcaaaatgtcaaggtggtgtctgatgattgcggc
acgcatgaagggattgaaatcacggatattgcggtggggagtgagctgattgaaccttta
gaagagcgtattttcgggcgcgttttattagaagatgtgatcgatcccattaccaatgaa
atcttgctctatgcggacactttgattgacgaagagggtgctaaaaaggtggttgaagct
gggattaaatccattacgatccgcaccccagtaacttgtaaagcgccaaagggcgtgtgc
gcgaaatgctatggcttgaatttaggcgaaggcaagatgagctatccgggtgaagcggtg
ggcgtggtagccgcgcaatctatcggggagcctggaacgcagctcactttaaggactttc
catgtgggcgggacagcgagcaggagtcaggatgagcgcgaaatcgtggcgagcaaagaa
ggttttgtgcgtttctacaaccttaggacttacacgaataaagagggtaaaaacattatc
gccaaccgccgtaacgcttctattttagtggtagagcctaagattaaagcgccttttgat
ggggaattacgcattgaaacggtctatgaagaagtcgttgtgagcgtgaaaaatggcgat
caagaagctaaattcgttttaagaagaagcgatattgtcaagccaagcgaattagccggc
gttggcggtaagattgaggggaaagtgtatttgccttatgctagcgggcataaggtgcat
aaggggggaagtatcgctgatattatccaagagggctggaatgtgcctaatcgcatccct
tatgcgagcgaattgctggttaaagataatgaccctatcgcgcaagatgtgtatgccaaa
gaaaaaggtgtgatcaaatactatgttttagaggccaatcatttagagcgcacccatgga
gtcaaaaagggcgatattgtgagtgaaaaaggcttgtttgcagtggtagctgatgataat
ggtagggaagccgctcgccattatatcgctaggggttctgagatcttgattgatgataat
agtgaagtgagcgctaatagtgtaatttctaaacccacgactaacactttcaaaacgatt
gccacatgggatccttacaacacccctatcattgcggactttaaaggtaaggtgaatttt
gtggatgttatcgcaggggttacggtcgctgaaaaagaagacgaaaataccggtatcacc
agtttagtggtgaatgattacatcccaagcggatacaaaccaagcttgtttttagagggg
gctaatggcgaagagatgcgttatttcctagagccaaaaacttctatcgccattagcgat
ggctctagcgtggagcaggctgaagtgttagcgaaaatccctaaagcgaccgttaaatct
agggatattaccgggggtctcccaagggtttctgaactctttgaagcgagaaaacccaag
cctaaagatgtggcgatcctttctgaagtggatgggatagtgagttttggcaaacccatt
cgcaataaagaacacatcatcgtaacttccaaagatggtcgtctcacagattattttgtg
gataagggcaagcaaattctagtgcatgccgatgaatttgtgcatgcgggagaagcgatg
acggacggagtggtttcaagccatgatattttaaggatcagcggcgaaaaagagctttat
aaatacattgtgagcgaagtccagcaagtgtatcgcaggcagggggtaagcattgccgac
aagcacattgaaatcattgtgtctcaaatgttaaggcaagtgcgcattttagacagcggg
gatagcaagtttattgaaggggatttggtcagtaaaaaactcttcaaagaagaaaacact
cgtgtgatcgctttaaaaggcgagccagcgattgctgaaccggtgcttttagggatcact
agagcggctattgggagcgatagcatcatttcagcggcctctttccaagaaacgactaaa
gttttaacagaagccagtattgcgatgaaaaaagactttttagaagatttgaaagagaat
gtggtgttggggaggatgatccctgtgggaactggcatgtataagaataaaaaaatcgtg
ttaagagcgcttgaggataactctaaattttga
DBGET
integrated database retrieval system
