Candidatus Haliotispira prima: P0082_00840
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Entry
P0082_00840 CDS
T09917
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hpri
Candidatus Haliotispira prima
Pathway
hpri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0082_00840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpri03021
]
P0082_00840 (rpoB)
03400 DNA repair and recombination proteins [BR:
hpri03400
]
P0082_00840 (rpoB)
Enzymes [BR:
hpri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0082_00840 (rpoB)
Transcription machinery [BR:
hpri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0082_00840 (rpoB)
DNA repair and recombination proteins [BR:
hpri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0082_00840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WGK70467
UniProt:
A0ABY8MK94
LinkDB
All DBs
Position
211661..215143
Genome browser
AA seq
1160 aa
AA seq
DB search
MSKNERTYIGEKYNEILALPNLVEVQTLSYDRFLSVSIEGEEKVSENLQDVFNSVFPIES
PNGDLLIEYVDFSLDYQGVRFSEAECKRKGHTYAVPLKARINLVFQDTGEIRQKEIYMGD
IPIMTERGTFVINGIERIVVSQLHRSPGVIFNNDKGVHSSRIIPYRGSWLDLEVDAKKEI
VYTKIDRKKRILTTMFLRALGLNTREDIIEAFYKSKTVRLSQKSAKELPGFYLAKAVYIK
DESGNERKLYRAGEKLMPHDIDDLRHSKVSSISIIDMLAPDSLNSVVILNCFEREAGLFA
EDMENKKDEPSREDALSLVYSTLQPGDPVTVETADRELQSIFFSARRYDLGKVGRYKLNK
KLETGAPGDLQVLTIRDIILTIKHLIKVYEGYESVDDIDHMGNRRVRSVGELMANQLKTA
FSRMDRIVRERMPLKDTETLNPQDLISTKPIVSAIKDFFGSSQLSQFMEQVNPLAELTHK
RRLNALGPGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLIVSLANYTRINEFGFL
ETPYRRVLKGKVSDRIEYLSAMDEEKCYIAQASAKLDPEGNFVDELVAVRRSGDYTNKTP
EEIEYMDVSPRQIISTAASLIPFLEHDDANRALMGCNMQRQAVPLLFPEAPIVGTGMEAK
AAYDAGVVVKARDAGEVTNVTSCEIRILHQGEKAGKENEVAYPLLQYGRTNQDTSFHQRP
LVKKGDRVTKGELIADGPATDKGELALGRNLLVGFVPWNGYNFEDAVLISQKVVKDDYYT
SIHIKEFSIQIRETKLGLDKITRDIPNIADKNLGHLDEEGIVRIGAHVKSGDVLVGRITP
KSESDSTPEFRLLNSIFGEKARDVRDTSLKLPHGVEGTVVEIQRLARAAGDNLDPGVNEV
VKVVLATKRKLKEGDKMAGRHGNKGVVARILPEEDMPFLEDGTPLEICLNPLGIPSRMNI
GQILETMLGHVGQRLGRLYEASVFLSPDVEEISQLLEESGVSRASKMTAFDGQTGDAFEN
EILVGYMYYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGA
SHTLQELMTVKSDDMNGRVHVYESIVKGDPASTSGIPESFNVLVQELRGLALDVSVYDRK
NKQLPLTERDDELINRQDTF
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaatgagcgaacatatattggcgaaaaatataatgaaatccttgctttaccg
aatctcgtagaagtacagaccttatcttacgatcggtttctttctgtttcgattgagggg
gaagaaaaagtcagtgagaatctacaggatgtttttaattctgtctttccgatcgagagt
cccaatggtgatctgctgatagaatacgttgatttttctctcgactatcagggcgtgcgc
ttttctgaagcggagtgcaagagaaaagggcacacttacgccgtgcccttaaaggccaga
atcaacttggtgttccaggacaccggtgaaattcgccagaaagaaatctacatgggggac
atccccatcatgactgagcgcggtacttttgttatcaatggtattgagcggattgtcgtt
tcccagttgcaccgttcccctggcgtaatttttaacaatgacaagggtgtccactcttcg
cggatcattccttatcgcggttcttggctggacttggaagtcgatgccaagaaagaaatc
gtctatacaaagattgaccgcaagaagcgaattttgacaaccatgtttctccgcgctctt
gggttgaatacgcgtgaagatattatagaagccttttataagtctaagacagtgcgtctg
tcgcaaaaatcggccaaagaattgccgggtttctatttggccaaggctgtttacattaaa
gatgagagtggtaacgagcgcaaattgtaccgcgccggtgaaaaattgatgccgcacgac
attgacgacttgcggcatagcaaggtcagttcgatttcgatcattgacatgttggcaccg
gattccctgaattccgttgtgattctgaattgttttgagcgcgaggcgggtttgtttgcc
gaggacatggagaacaagaaggatgagccttcgcgcgaagatgcgctgagcttggtctac
tccacgctgcaacccggcgatccggtgacggtggaaacagccgaccgggaattacagagc
attttcttttctgcccgccgctacgatttgggtaaggtgggccgttacaaactgaacaag
aaattggaaaccggagcccccggtgaccttcaggttttgactattcgggacatcattctg
accatcaagcacctgatcaaggtctatgagggttatgaatcagtggatgacatcgaccac
atggggaaccgtcgtgtgcgctcggtgggagaactgatggcgaaccaactgaagacggct
ttcagtcggatggatcgcattgtccgtgagcgcatgccgctcaaagatactgagaccctc
aacccgcaggatttgatttcgacaaaaccgatagtttcggcgatcaaggactttttcggc
agcagccaactatctcagttcatggaacaggtgaacccgttggcggaattgactcacaag
cgtcgtctgaatgctttagggcccggcggtctgtcccgtgaccgcgccggttttgaagtg
cgtgatgtgcattattcgcactacggccggatgtgtccgattgaaacaccggaagggccg
aatattggtctgattgtgtctttggctaattacacccgtatcaatgagtttggtttcctg
gagactccgtatcgccgtgtgcttaagggcaaggtttcggataggattgaatacctttcg
gcgatggacgaagaaaaatgctatattgcccaagcttcggccaaactggatccggaaggc
aactttgtcgatgaattggttgcagtacgccgttcgggagactataccaacaagactccg
gaagaaattgagtacatggatgtgtcgccgcgccaaatcatttccacggccgcctcactg
attccgtttttggagcacgatgatgcgaatcgcgctttgatgggctgtaatatgcagcgt
caggccgtgccgctgctcttccccgaagctccgattgtcggtaccgggatggaggccaag
gccgcgtacgatgccggtgttgtagtgaaagcccgcgatgcgggcgaagtgaccaacgtc
acttcctgtgaaattcgcattttgcatcagggcgagaaggcgggtaaagagaatgaagtt
gcttatccgctgctgcaatatggccgaactaaccaggatacctcttttcaccagcggccg
ctggtgaaaaagggggatcgtgtaaccaagggcgaactgatcgccgacggtccggctacg
gacaagggcgaattggctctgggtcgcaacctcttggtcggttttgtgccttggaacggc
tacaattttgaagatgcggtattgatctcacagaaagtggtgaaggacgactactatact
tcaatccatatcaaggaattttctatccaaattcgggagaccaaattgggtttggataaa
atcacccgagacattcccaacattgccgacaaaaatttgggtcatctggacgaagagggt
attgtgcgcatcggtgcccacgttaagtccggcgatgtcctggtgggtcggatcactccg
aagtccgagtcggacagcactccggaattccgcctgctgaactcaatttttggtgaaaag
gcccgggatgtgcgcgacacgtcgttgaagctgccccacggtgtcgaaggcaccgtggtc
gagattcagcgtttggcccgtgcggccggggataacctggacccgggtgtgaatgaagtg
gtcaaggttgtattggcaacgaaacgcaagctcaaagagggagacaaaatggccggtcgc
cacgggaataagggcgtggtcgcccggattctgcccgaagaagacatgcctttcctcgaa
gacggtacgccgttggaaatttgtctgaatccgttgggtattccctcccgtatgaacatc
ggtcaaattctggaaacgatgctcggccatgtcggtcagcgattgggcaggctgtacgag
gcctccgtattcctttctcccgatgtggaggaaatcagccaactgctggaggagtccggg
gtttcccgtgcttccaaaatgacggccttcgacggccagaccggggatgcttttgaaaat
gagattctggtcggttacatgtactacctgaaactgcaccacttggtggacgataagatg
cacgcccgttctaccgggccttattctctggttactcagcaaccgctgggcggtaaggcc
caatttggcggtcagcggctgggtgaaatggaggtttgggccctggaagcctatggtgcc
tctcacaccttgcaggagctgatgacggtcaagtcggatgatatgaatggccgtgttcat
gtctacgagagtatcgtcaagggtgacccggcatcgacatccggtattcccgaatccttt
aacgttttagtacaggagctgcgtggcttggcgttagatgtttcggtctacgaccgcaag
aacaaacaactgccgctgaccgagcgcgatgatgaactgattaatcgccaggatactttc
taa
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