Halomonas profundus: LMS44_00915
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Entry
LMS44_00915 CDS
T08361
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hpro
Halomonas profundus
Pathway
hpro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hpro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMS44_00915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpro03021
]
LMS44_00915 (rpoC)
03400 DNA repair and recombination proteins [BR:
hpro03400
]
LMS44_00915 (rpoC)
Enzymes [BR:
hpro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMS44_00915 (rpoC)
Transcription machinery [BR:
hpro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMS44_00915 (rpoC)
DNA repair and recombination proteins [BR:
hpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMS44_00915 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UEQ04451
LinkDB
All DBs
Position
210137..214351
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLMNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEIDIEEESGERSFHRRIYDTTVGRALLFRILPEGVPFELIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDRDGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITEVDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVVHPGSGEVLIAKGTLLDEKWCAELDTMGVDEIIVRSTITCETAHGVCASCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGATVAK
WDPHTHPIVAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDSSGEYVSVSGSNTPVQYLLPGNSIISVDDGVTIGVGEVVARIPVEASANKDITGGLP
RVADLFEARKPKESSILAEISGVISFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GETVEKGEVISDGPSNPHDILRLLGVEELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNERLEKEKKFPAKYQRMLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVEQLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcagtctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cctgagaccatcaactaccgtacctttaaaccggagcgggatggcctgttctgcgccaag
atttttggcccggttaaggattacgagtgcctgtgcggcaagtataagcgcatgaagcac
cgcggtatcatctgcgaaaagtgtggcgtagaagtgaccaaagccgccgtgcgccgtgag
cgcatggggcacatcgagctcgcttcgccggtggcacacatttggtttttgaagtcacta
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtat
ttcgaaagctttgtcgttatcgatccaggcatgaccacgctggagcgtggtcagttgatg
aacgacgagcagtactttgaagcactggaagagttcggtgatgacttcgacgcccgcatg
ggtgccgaagccgttcaggagctgctcaaagacatcgatctggaagaagagattaaccac
ctgcgcgaagagattccgcagactaactccgaaaccaagatcaagaagctctccaagcgc
ctcaagctgcttgaagccttctaccactccggtaacgcgccggcgtggatggtcatggaa
gtgctgcccgtgctgccaccggatctgcgtccgctggtaccgctggacggtggccgtttc
gcgacctccgatctcaacgacctttaccgtcgtgtgatcaaccgtaacaaccgcctgaag
cgtctgctcgatctcaatgcgccggacattattgtgcgcaacgagaagcgtatgctgcag
gaagccgtcgatgcactgctcgacaatggtcgtcgtggccgcgcgatcacgggctctaac
aagcgcccgctgaaatcgctcgccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtcgactactcgggccgctcggtgattaccgttggtccgacc
ctgcgtctgcaccagtgtggtctgcccaagaaaatggcgcttgagctgttcaagccgttt
atctactccaagctgcagtcgctgggctatgcctcaacgatcaaagccgccaagaagatg
gtcgagcgcgagctgccggaagtgtgggacatccttgccgatgttatccgcgaacacccg
gtactgcttaaccgcgcacccacgcttcaccgtttgggtatccaggcgtttgagccgctg
ctgatcgaaggtaaagcgattcagctgcacccgctggtatgtgctgcctataacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgacgctggaagcacagcttgaagcg
cgtgcgctgatgatggccaccaacaacgtgctgtcgcccgctaacggcgagccgatcatc
gtaccgtcgcaagacgttgttctgggtctttactacatgacccgcgaaaagatcaacgcc
aaaggcgaaggcatggtgttctctgaccttaatgaagttgagcgcgcctttggtactcag
tcagtatcactgcacgcccgggtcaaagtgcgtctggacgaaatcgatatcgaagaagag
agcggcgagcgtagcttccaccgccgtatttacgatacgacggtaggccgtgcactgctg
ttccgcattctgcccgaaggtgtgcccttcgagctgatcgaccagccgatgaagaagaag
gcgatctccagcctgatcaacgaagtctaccgtcgtgccggcctcaagccgaccgtcatt
ttcgctgaccagctgatgtataccggtttccgtctcgcgacctggtccggcgcctcaatc
ggtgttaacgacttcgttatccccgaagcaaaaactgaaatcgttgatgcagcggaagcc
gaagttaaagagatcgaagaccagttctcttctggcctggtaacagcgggtgagaagtac
aacaaggttatcgatatctggtccaaggccaacgataaagtcgccaaggcgatgatggtg
ggtatctctaaagagactgtcatcgatcgtgatggtaacgaagttgagcaggattcgttc
aacagcgtcttcatcatggccgactccggtgctcgtggtagtgctgcccagatccgtcag
ttggcgggtatgcgtggtctgatggccaagccggatggttcaatcatcgaaacaccgatc
gtcgccaacttccgtgaaggtctgaacgtactgcagtacttcatctcgacccacggtgca
cgtaaaggtcttgcggacacggcgttgaaaaccgccaactccggttacctaacccgtcgc
ttggtagacgtagcgcaagacttggtcatcaccgaagtcgactgtggcaccgaaaatggc
ttgaccctgcacccgatcatcgaaggcggcgacattatcgtaccgctttcccagcgcgtg
ctgggtcgtgtagtcgctcaggatgtggttcaccctggcagcggtgaagtcttgatcgcg
aaaggtaccttgctcgacgagaaatggtgtgccgagctcgacaccatgggtgtcgacgag
atcatcgttcgctctacgattacctgtgagaccgcacacggcgtgtgtgcctcctgttac
ggccgtgacttggcccgtggccatcaggtcaacatcggtgaagccgtcggcgttatcgct
gcacagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgttcgtctgctgtggatagcgtacaagtgaagcacggcggtaaggttcgt
ctgcacaacatcaagcatgtagagcgtgccgacggcaagctggttgtcgtatctcgctcc
agcgccctggccgttgctgacgaccatggccgtgagcgtgagtactataagctcccttac
ggtgctgagctttctgtacgcgacggcgacgtggtcgacgctggtgcgacggtcgccaaa
tgggatccgcacactcacccgatcgttgccgaagtagaaggtaaggcgcagttcatcgat
ctcgacgagggtgtcaccatgcaccgcagcgtcgatgagatgaccggcctctcctctatc
gaggtgatcgagtctgcagcacgtcccatggccggtcgtgacaagcgcccgatggtcatg
ctgcaagacagctcgggcgagtacgtctctgtatcgggctccaacaccccggttcagtac
ctgcttccgggcaactcgattatttcggtcgacgatggtgtgacgatcggggtgggtgaa
gtggttgcccgtatcccggtagaagcctcggcgaacaaagacatcaccggtggtctgccg
cgggttgctgacttgttcgaagcgcgtaagccgaaagagtcctcgatcctggccgagatc
agcggtgtgatcagcttcggtaaagagaccaaaggtaagcgtcgtctgaccattaccccg
gaatctggcgatccgtttgaagcgctgattccgaaatggcgtcaaattgccgtcttcgaa
ggcgaaaccgtcgagaagggcgaggtgatttccgatgggccgagcaatccgcacgatatc
ctgcgcttgctgggtgttgaggagctcgccaagtacatcactgccgaagtacaggacgtt
tatcgtctgcagggcgtaggcatcaacgacaagcacatcgaagtcattgtgcgtcagatg
ctgcgtaaggtagagattactgattcgggcgattctgacttcatcacgggcgaccaggct
gaactggttcgcgtgctggaacagaacgaacgccttgaaaaagagaagaaattcccggcc
aagtatcagcgtatgctgctgggtatcaccaaggccagcttggccaccgagtcgttcatt
tccgcggcctccttccaggagacaacccgcgtactgaccgaagcagcggtgactggcaag
cgtgattacctgcgtggcctgaaagaaaacgtggtggttggtcgcctgataccggctggt
acaggcttgactcaccacgcagaacgtcgtcgcaagcgcgaagacgttgagcaactgttc
aatccttcggctaccgaagtcgaacaggagctgggtgcacagttgaccgctctcgattct
gacgacgagctgtag
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