Henckelia pumila: 140884519
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Entry
140884519 CDS
T11037
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hpum Henckelia pumila
Pathway
hpum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140884519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpum03019
]
140884519
Messenger RNA biogenesis [BR:
hpum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140884519
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140884519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
140884519
NCBI-ProteinID:
XP_073147394
LinkDB
All DBs
Position
2:13115036..13137628
Genome browser
AA seq
2420 aa
AA seq
DB search
MIPLSSKLSSQIRFLIQSLDDSDSGSDFESIFLELCECTSHGTEGSILLLQICLDHLNTY
QKDLKNMQMHPIFASLFKHIMDKPNFSTVLCQSLSTAAINGEYLQNLSNGLHLSPLEKMG
MGLALSDSDNLEIRMCGKNFCMSQITELGANPVASDSSELIQQILVFLSQSEGLSKYVDS
FMQMLSLVQLKEGAQFILAPFLSDELRDENFFRHLDLFNEGDEDDFDAILAEMEKESSMA
DMMNELGYGCTANVSQCKEMLSLFSPLSDVTIAKILGTIARTYAGLDDSQNVFSTFCSAL
GGNIASEQPPLNSWNVDVLVDSIKQLAPGINWINVMEKLDHENFYIPNDTAFSFFMSVYK
YACQDPFPLHAICGFIWKNVEGQLSFLKYAISMPPEVFTFAHSERQMVYDDVVTGHKFPS
GLLNHAWTCHDLLEVLCQLAERGHANFVRSAIKNPLNHCPEVLLIGMARVNTAYNLIQHE
VSSAVLPMVLKNVSGNSLMLHLWHDNPNMLLRGFIDATNIDPDNYSRILDACQELKILSP
VLDMIPSYFGIRLATLASRKEFMDLENWLSNKLVAYKDAFYEECLKFLKEVQLGAQDVSS
NRFHPIGALVNTYLEAYPSFLKVLRSHAGAISSSHLPEEMEKLQATTMRGNTRLKDGGTA
DSTSSDSYADDIEKEANSYFHQMFSGLLAIDAMIQMLTRFKESPERREQLIFECMIANLF
EEYKFFSKYPERQLKIAAGLFGSLIKHQLVTHLTLGIALRAVLDALRKPADSKMFVFGTK
ALEQFVDRLIEWPQYCNHILQISHLRVTNGDLVTFIERALARISAAHTDQDIVHSDTTDL
HHGPIQSSSTNVEIPSSSLLLSGLGSSQTGPPVTPTVQLPQRSTSSLDERKPPVVLSNYL
KPGQSTAGQPAVAPSSDASVIQKSQSSVGALSHAASPGFQRPPRNTSTRFGSALNIETLI
TAAERREIPIETPASEIQDKISFIINNLSAANIEAKAKEFSEILNERYYPWFAQYMVMKR
ASIEPNFHDLYLKFLDKVNLKSLNKEVVQATYENCKVLLGSELIKSSSEERSLLKNLGSW
LGKITIGKNQVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKILEPCSNSLAYQPPNPWTM
GILGLLVEIYAMPNLKINLKFDIEVLFKNLGVDLKEVTPTSLLKDKIREVEGNPDFSNKE
VGSSQPQMVNEVKSGIIPTLNQVEQPLDVAPPHPGAHSHIISQYAAPLHTPSGTLADDEK
LTSPGVTEQISSAQGLPQGQSQFSVNQIPVPASNMEQQVIINKKLHALGLYLNFQSVLPI
AMDRAITEIVSSIVQRSVSIATQTTKELVLKDYALEPDETLIRNAAHLMVARLAGSLAHV
TCKEPLRGSISSQLRGLLQGLSISNELLEQAIQLVTNDNLDLGCAVIEQAATEKAIQTID
GEIAQQLTIRRKHREGAGLTYFDSSLYAQGQMGVLPDALRPKPGRLSHSQQRVYEDFARL
PWQNWSSQGSNAAPVIPITSSGSGGLSRQFVSASDQITAGIYTSGIANAGISAIPQNLKI
GYEEFDANASHIPSASTNIATVDASTLQSLENDVSSFPLTSTPELHLTGPSNYLKEPVAS
VQSVIPTLASDRLGSNVLEPSLTTGDALEKYQTISEKLENLVISDAKETEIQGVIAEVPA
VILRCISRDEAALAVAQKSFKGLYENAANRAHVSAHLAILAAIRDVSKLVVKELTSWVMY
SDEDRKFNKDITVGLIGSELLNLAEYNVYMAKLIDAGRNKAATEFAISLIQTLVVNDSKV
ISELHNLVDALAKLAARPGSPESLQQLVEIAKNPSANPTTLPTVIVGKEDNVRSSKDKKA
SGIPGSSREDYSATELVEPDPAGLHEQVSMLFAEWYQICELPGANDAACARYVLHLQQRG
LLNGDDTSEHFFRRLMELSVSHCLSSEVINSSSSQSHLGQPLSFLAIDIYAKLVFSILKF
FPVDHGPSKLSLLLKILAVTVKFIQKDAAEKQSSFNPRPYFRLFINWLLDLCSLDPVFDG
TNFQVLTALANAFHALQPLKIPGFSFAWLELVSHRSFMPKLLTVNAQKGWPYFQRLLVDL
FQFMEPFLRLADLGEPIQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNI
ILSAFPRNMRLPDPSTPNLKIDLLAEISHTPRILSEVDAALKAKQIKNDVDEYLKTRQQG
SSFLTELKQKLLLTPSEGARSGSRYNVPLMNALVLYVGMQAIQQLQSRVPPYTQSMASMT
AFLVSAALDIFQTLIFDLDSEGRYLFLNAIGNQLRYPNNHTHYFSFILLYLFNESNQEII
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSC
GGPKPVDENVVSGGIPDNMH
NT seq
7263 nt
NT seq
+upstream
nt +downstream
nt
atgattccgctgtcatcgaaattgtccagtcaaattcggtttctcatccagagcttggat
gactccgactcgggctccgacttcgaatcgattttcctagagctctgcgagtgtacttca
catggaaccgaaggaagcatattgctactccaaatctgtttggatcacttgaatacttat
cagaaagatttgaagaatatgcagatgcatccaatatttgcttcgttgtttaaacatatt
atggataaacctaatttcagcacagtcctctgtcaatcattgagtactgcagctataaat
ggagaatatctgcagaatctttctaatgggttgcacttatcgccattagagaaaatggga
atgggccttgctttgtctgattcagacaaccttgagatcagaatgtgcgggaaaaacttt
tgcatgagtcagattacagaattgggtgccaatcccgtggcttcagattcttctgagcta
attcagcaaattctggtgtttcttagtcaatccgaaggtctatctaagtatgtagattcg
ttcatgcaaatgttatcgcttgtgcaattgaaggagggagcccaatttatcttagcccct
ttcctttccgatgaattgcgtgacgaaaatttcttcaggcatttggatttattcaatgaa
ggtgatgaagatgattttgatgccattctagcagaaatggagaaggaaagtagcatggct
gatatgatgaatgaattaggctatggatgcactgccaatgtctcacaatgcaaagaaatg
ttgtctttattctcccccctttctgatgtcaccattgcaaagatacttggtacaattgcc
cgaacttacgcaggtcttgatgacagtcaaaatgtgttctctacattttgttctgcactt
gggggtaatattgcttcagagcaaccgcctctgaactcttggaatgtagacgtactagtg
gattcaataaagcagctcgctcctggaattaactggataaatgtcatggagaagctggac
cacgagaatttttatatccctaatgatacagcattttccttttttatgtccgtgtataaa
tatgcatgccaggacccgtttcctcttcatgccatttgcggttttatttggaagaatgtc
gagggtcagctatcattcttaaagtatgccatctcaatgccacctgaagtgtttacattt
gcacattctgagaggcaaatggtctacgatgatgttgtgacagggcataagtttccatct
ggtctgttaaatcatgcttggacctgccatgacctcctcgaggtgttatgccaactagct
gagaggggccatgcaaattttgtgcgatctgctattaagaatcctcttaaccactgccct
gaagttttgcttattgggatggctcgtgtgaatacggcatataatcttatccagcacgaa
gtgtcttctgctgttcttcctatggtactcaaaaatgtttcagggaacagtttaatgctt
catctgtggcatgacaacccgaacatgttgttgcgaggattcatagatgccacgaacatt
gatcctgacaactatagtaggattctggatgcttgccaggaattaaagatcctatctccc
gtattggatatgattccctcttattttggaattcgactggctacccttgcttctagaaag
gaattcatggatcttgaaaactggttgagcaataaattagttgcatacaaagatgctttc
tatgaggagtgcctcaagtttctaaaggaggttcagcttggagctcaggatgtatcttct
aatcgctttcaccccattggcgctcttgtgaatacttatttggaagcatatccctctttc
ttaaaggtccttcggtctcatgctggtgccatttcgtccagtcatttgcccgaggaaatg
gaaaaattgcaagccactaccatgcgtggtaatacacgacttaaagatggtggaactgct
gactctacctcttctgatagttatgctgatgatattgagaaagaagcaaattcatacttc
catcaaatgttttcgggtctgctagcaattgatgcgatgattcaaatgcttactcgtttc
aaggaatctccggagagaagggaacaattgatttttgagtgcatgattgctaatctattc
gaggagtacaagttcttttctaagtaccctgaaaggcagttgaaaattgccgctggtctt
tttgggtcactcatcaagcatcaactcgtgacccatctcaccctcggtatcgctttgcga
gctgttttagatgctctgcggaaacctgcggattcaaaaatgtttgtttttgggactaag
gcgctggaacagtttgttgaccgcctcattgagtggccacagtactgcaatcatattctg
caaatatctcatttacgtgttacgaacggggacctcgttacatttattgagagggcactc
gctaggatttcagcagctcatactgatcaagacattgtccatagtgacactacagatctt
catcatggtcctatccagtcatcttctactaacgtggagattccgagctcgtctttgttg
ttatctggactgggaagttcacagactgggccgccagtcacccctacagtccaacttccc
caaagatctacaagttctttagatgagagaaaaccccccgtggtgctgtctaattaccta
aagccaggacaatcaactgcagggcagcctgctgttgctccttcaagtgatgcatctgtc
attcagaagtctcagagttccgtcggtgcattatcgcatgctgcctctcctggttttcaa
cgcccacctcgaaatacctcaacaaggtttggctctgccttaaacatcgaaactcttatc
acagcagcagagagaagagagattccgatagagactcctgcttctgaaattcaggataag
atatcttttatcattaataacttgtctgctgccaatatcgaggctaaagctaaagagttt
tctgagattctgaatgagcgctattatccctggtttgctcagtatatggttatgaagaga
gcaagcattgagccaaattttcatgatctgtacttaaagttccttgataaagtaaatctg
aagtctttgaacaaagaggttgtacaagccacttacgagaactgcaaggtacttctaggg
tcagaacttataaagtcaagttcagaagagcgttcattgctgaaaaatttaggaagctgg
cttgggaagattactattgggaaaaatcaagttttaagggcacgagagattgatcccaaa
tctctgattgtggaggcgtatgagaagggacttatgattgctgtcattccttttacatcc
aagattttggaaccatgttctaacagtctagcttatcaacctccaaacccttggacaatg
ggtatacttggattgcttgttgagatttatgcaatgcctaatttaaaaataaatctgaag
tttgatatcgaggtcctgttcaagaaccttggtgtagatttaaaagaagttacacctacg
tctcttctcaaggacaaaattcgagaagttgaaggtaatcctgatttttccaataaagaa
gtaggatcttcacaacctcagatggtaaatgaggtgaagtctggaataatacctacactc
aaccaagttgagcaaccacttgatgttgctccacctcatccgggtgctcattcacatatc
atatctcagtatgcggctcctcttcatactccatctggcacattggctgacgatgagaag
ttgacaagtccgggggtaactgagcagatttcttctgctcaaggtcttccccagggacag
tcccagttttcagttaaccagattccagtgccagcctctaatatggaacaacaagttatt
atcaataaaaaactccatgcattgggtctgtacttgaatttccagagtgtacttccaatt
gccatggatagagctatcacagagatagtgtccagcatcgtgcagcgaagtgtttctatt
gcaactcagacaacaaaggaacttgttttgaaggactatgctttggagcctgatgaaacc
ctcatacgtaacgcagcacatttgatggttgctaggttggctgggagtctagcacatgtg
acatgcaaggaacctttgcgtggttcaatatcaagccagcttaggggtttgcttcaggga
ttgagcatatcgaatgagcttttagagcaagcgattcaacttgtgaccaatgacaatctg
gaccttggctgtgcagtgattgaacaagctgccactgaaaaggcaattcaaaccattgat
ggggaaattgctcagcaacttactatcaggaggaaacatagagagggtgctggtctcaca
tattttgactctagcctgtatgcccaaggtcaaatgggtgttttgccggacgcacttcgc
cctaaacctggacgcctgtcacactcgcagcagcgtgtttatgaggattttgctcggtta
ccgtggcagaattggtccagtcagggttcaaatgctgcacctgttattcccattacttca
tctggcagtgggggactctctcggcaatttgtatccgcatctgaccaaataactgctggt
atttacacatctggcattgcaaacgcaggaattagtgccattccccagaatctgaaaatt
ggttatgaggagtttgacgccaatgcttctcatattcctagtgcttccactaatattgca
actgttgatgcttctactctgcaaagtcttgaaaatgatgtttcttcgttcccccttact
tcgacacctgaattgcatttgacaggaccttctaattatttaaaagaaccagtggcttcg
gtgcagtctgttattccaactttggcatcggatcgtctcggaagcaatgttttggagcct
tcgttaaccacaggcgatgcactggagaagtaccagactatttcagagaagcttgaaaat
ctagtgattagtgatgccaaggagacagaaatccagggagttatagctgaggttcccgct
gtcatcctcaggtgcataagccgagacgaggctgctttggcagttgcccaaaagtctttc
aagggcttgtatgaaaacgcagcaaaccgagctcatgtcagtgctcatctagcaatcttg
gctgccattcgtgatgttagcaagcttgttgttaaggagctcactagttgggtaatgtac
tctgatgaggaccggaagttcaataaggatatcactgttggtcttattggcagtgaatta
ttaaatcttgctgaatataacgtctatatggcaaagcttattgatgcgggaaggaataag
gctgccacagaatttgccatttctcttatccaaacattggttgtcaatgattctaaagtg
atatcagaactacacaatcttgttgatgctctggcaaagcttgctgcaaggccaggatct
cccgagtcactgcaacagctagttgagatcgctaagaacccttccgcaaatcctacaact
ttgcctactgtgattgttgggaaggaagacaatgtgagatcatctaaagacaaaaaggcc
tctgggatacctgggtcgagcagggaagactactcggccacagaattggtggaaccagat
cccgctggtctgcatgagcaggtttccatgctgtttgcagagtggtaccaaatatgtgaa
cttcccggagcaaatgatgcagcttgcgctcgttatgtcttgcacttacagcagaggggc
ctgcttaatggagatgacacctcagagcattttttccgccggcttatggaactttcagtg
tcacactgcttatcttctgaggtgattaattctagctcttcccagtcacatttgggacaa
cctttgtcattccttgctattgacatctacgcgaaattggtcttctcaattctgaagttc
ttccctgtcgatcacgggcctagtaaactctctcttttgcttaagattcttgctgtgact
gtgaagtttatccaaaaagatgctgcagagaagcaatcctcgtttaatcccaggccatat
tttaggttgtttattaactggttgttggatttgtgttccttggacccagtttttgatggc
acaaatttccaggttttgactgctttagcaaatgctttccatgctcttcagcctctcaag
attccagggttcagctttgcttggctcgagttggtgagtcatagaagtttcatgccaaaa
ttactcacggtaaatgctcagaagggatggccttattttcaaagacttctggtagactta
ttccagttcatggagccattcctgagacttgctgacctgggagagccgatacaatttctt
tataaagggacactgagggtcttgttggttctactccatgatttcccagagttcctttgt
gattatcatttcagcttctgtgatgtcattccaccaagttgcatacagatgcgaaatata
atcctcagtgcatttcctcgcaatatgaggttgcctgatccatctacccccaatttaaag
attgacctactggcagaaatcagtcatactccacgaattctctctgaggttgatgcagct
cttaaagcaaagcagatcaagaatgacgtggatgagtatctcaagacaaggcagcaaggg
tcttcatttctcactgaattgaagcagaagcttttgcttactccatctgaaggagctcgg
tctgggagtcgttacaacgttcctctcatgaacgctcttgtcctttatgttgggatgcag
gccatccaacagctgcaatctagagtcccaccatacacgcaatccatggctagtatgacc
gcgttcttggttagtgctgctctggacattttccagaccttgatattcgatctggactca
gagggccgttacctgttcttgaatgctatcgggaaccagttgcgctatccaaacaaccac
actcattacttctctttcatccttctttacctgtttaacgaatcaaatcaggaaataatt
caggagcaaatcacccgggtccttcttgaacgactgattgttaataggcctcatccttgg
ggacttctaattacgttcattgagctcatcaagaatccccgatacaatttctggagccgg
tcttttacgaggtgtgcgcctgagattgagaagcttttcgaatcagtgtcaaggtcatgt
gggggtccaaaaccagtcgacgagaacgtggtttcgggcggcattccggacaatatgcac
taa
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integrated database retrieval system
