Helicobacter pylori Aklavik117: HPAKL117_01685
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Entry
HPAKL117_01685 CDS
T02352
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hpya
Helicobacter pylori Aklavik117
Pathway
hpya03410
Base excision repair
hpya03430
Mismatch repair
hpya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPAKL117_01685
03430 Mismatch repair
HPAKL117_01685
03440 Homologous recombination
HPAKL117_01685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpya03400
]
HPAKL117_01685
DNA repair and recombination proteins [BR:
hpya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPAKL117_01685
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPAKL117_01685
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPAKL117_01685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AFX90752
UniProt:
K7YR00
LinkDB
All DBs
Position
complement(339037..340587)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFNIAPLINSAGRMQDAKMALDFLSANNFQDGYFLYERLKACNMKRKMIQQQVF
EEALKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSGRSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIVSLFETLENFDFKVLPFCEKEPPLTLK
LKDIDRELLEIIEAGEPYGQENPEPLFQAKNLEVIEERIIKESHQVLRFKDKECVKEAIY
FNTERFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttattcaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcgcaaacacagaaattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattctttgaaagcctgaattataaacatgttcgcatt
gcaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccccttaatcatcacggtggataacgggattagcgcctttgaagccgcgcgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcggtgatcaaccctaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtggcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgcttggcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggagcgatggggtttttgcgccaaagagaagtttttagaaaacgatct
ttaaaagcgagcgatatttcttttaatatcgcccccttaatcaactccgcagggcgcatg
caagatgcaaaaatggctttagattttttaagcgcgaataattttcaagatggctatttt
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggctcttaagcatgcgatggttggcgaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagtggtcgcagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcgggttgagcgttggaaaaaacaatatcgtctcgctctttgaaacttta
gaaaattttgattttaaagtcttgcctttttgtgaaaaagaaccccctttaacgctcaaa
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaaccctgaacccctattccaagcaaaaaatttagaagtcatagaagaaagaatcatt
aaagaaagccaccaggttttgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacactgagcggtttttgaaagcgggcgaaaaagtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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