Helicobacter pylori oki154: HPOKI154_04190
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Entry
HPOKI154_04190 CDS
T03725
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
hpye
Helicobacter pylori oki154
Pathway
hpye03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI154_04190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpye03400
]
HPOKI154_04190
DNA repair and recombination proteins [BR:
hpye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI154_04190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
AHN39131
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Position
835661..837445
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AA seq
594 aa
AA seq
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MADLLSSLKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIKSYFSVRNNEITPNYRASLR
IQMMVKQIAFLETILVENEQDALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPI
PLITRKILKQPGVKYFGPFTSGAKDILDSLYELLPLVQKKNCIKDKKACMFYQIERCKAP
CENKITKEEYLKIAKECLEMIENKDKLIKELELKMERLSNNLRFEEALIYRDRIAKIQKI
APFTCMDLAKLYDLDIFAFYSGSHKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQ
AIINHYQSHLPLMPEQILLNACSNETLKELQDFISHQYSKKIALSIPKKGDKLALIEIAM
KNAQEIFSQEKTSNEDLILEEARSLFKLECMPYRVEIFDTSHHANSQCVGGMVVYENHEF
QKNSYRRYHLKGSNEYTQMSELLTRRALDFAKEPPPNLWVIDGGRAQLNIALEILKSSGS
FVEVIAISKEKRNSKAYRSKGGAKDIIHTASDTFKLLPSDKRLQWVQKLRDESHRYAINF
HRSTKLKNMKQIALLKEKGIGEASVKKLLDYFGSFEAIEKASEQEKNAVLKKRI
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttattatccagtttgaaaaacctttctcatagcagtggcgtgtatcaatat
tttgataaaaaccgccaattactctatatcggtaaggcgaaaaatttaaaaaaacgcatc
aaaagctatttttctgtccgcaataatgaaatcacgcccaattatcgcgcaagcttacgc
atccaaatgatggtcaaacagatcgcttttttagaaaccattttagtagaaaacgagcaa
gacgctttgattttagaaaattctttaatcaagcagctcaagcccaaatacaacattctt
ttaagagacgataaaacttacccttatatttatatggatttttccactgatttccctatc
cctttaatcacacgaaaaattttaaaacagcctggcgttaaatattttggcccttttacg
agcggggctaaagatattttagacagcttgtatgaattgctcccgttagttcaaaagaaa
aattgcatcaaagataaaaaggcatgcatgttttatcaaatagagcgttgtaaagcccca
tgcgagaataaaatcaccaaagaagagtatttgaaaatcgctaaagaatgtttagaaatg
attgaaaataaagacaaactcatcaaagagcttgaattaaaaatggagcgcctttctaat
aacttgcgttttgaagaagccctcatttatagggataggattgcaaaaatccaaaaaatc
gcccctttcacttgcatggatttagccaaactctatgatttggatatttttgctttttat
agtgggagccataaggcggtgttggtgaaaatgtttatgcgtgggggtaaaatcatttct
tcagcgtttgaaaaaatccactctctcaatgggtttgacactgatgaagcgatgaagcaa
gccattatcaatcattaccaatcgcatttgcctttgatgcctgaacagattttattgaac
gcttgctctaatgaaacgcttaaagaattgcaagattttatctctcaccaatactctaaa
aaaatcgctcttagtattcctaaaaaaggcgataagctcgctttaatagaaatcgctatg
aaaaacgctcaagagatttttagccaggaaaaaacctctaatgaagatctgattttagaa
gaagcgcgatcgctctttaaattagagtgcatgccttatagggtggaaatttttgacaca
agccaccatgccaacagccaatgcgtggggggaatggtcgtgtatgaaaatcatgaattt
caaaaaaactcctatcggcgctaccatttaaaaggctctaatgaatacactcaaatgagc
gaattgctcaccagaagggctttagatttcgccaaagagccgccgcctaatttgtgggtg
atcgatggagggagggcgcaattaaacattgctttagaaattttaaaaagcagcgggagt
tttgtagaagtgatcgctatttctaaagaaaaaaggaattctaaagcttatcgctctaaa
gggggcgctaaagacattatccacaccgctagcgatacttttaaattgctccctagcgac
aagcgcttgcaatgggtgcaaaaattgcgcgatgaaagccaccggtatgcgataaacttc
catagatccactaaactcaaaaacatgaaacaaatcgctcttttaaaagaaaagggtata
ggagaagccagcgtgaaaaaattgttggattattttgggagttttgaagcgatagaaaaa
gcgagcgagcaagaaaaaaacgctgttttaaaaaaacgaatctaa
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