Helicobacter pylori SouthAfrica20: HPSA20_0802
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Entry
HPSA20_0802 CDS
T02807
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hpys
Helicobacter pylori SouthAfrica20
Pathway
hpys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSA20_0802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpys03019
]
HPSA20_0802
Messenger RNA biogenesis [BR:
hpys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPSA20_0802
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
AGT74038
UniProt:
T1UC73
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All DBs
Position
complement(750221..751732)
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AA seq
503 aa
AA seq
DB search
MKKIYYARGQTILKSASAKAKLMEFQAKSFVDAEEMRMKSQECKLQQQYENKNLQLQTHF
DKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQEKENFKKQRAICKEAQSKA
LDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKEEGRKKSYAILAEATAR
FAGDYATENLTTRIALPCSDYIGRVIGKDGKNIEAFKKISGVDIEFSEDSNELCLSSFNL
YRREVASETIKILIEDGRIQPNRIEEVYNRVVRNMEKELLSEGESVVLELELGAMEDELK
ILLGKMRYRSSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRAGILHDIGKALTQELGR
DHVNLGVEVCKRNREYPVVINAIYAHHGHEEIMSVECASVCAADALSAGRPGARRKSDEE
YAKRMQALEEIALGFEGVEKAYAMESGRELRVIVKSNQVRDNQVPIIARKIAKKIEESAQ
YVGEVGVQVVRENRFKTTATLKQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagatctattatgctagagggcaaaccattttaaaaagcgcttccgccaaagct
aagctaatggaatttcaagcgaaatctttcgtggatgctgaagagatgcgcatgaaaagc
caagaatgcaaattgcaacagcaatatgaaaataagaatttgcaactccaaacccatttt
gacaaaaaagaagcgcatttgaagcatttagaagcgcaacacaaagaatttgtaagagat
gaaaaacgctatttggaaaaggaaaaaaaagagcttgaaaaagagcgccaaattttagaa
caagaaaaagaaaattttaaaaaacagcgcgctatttgcaaagaagctcaatccaaggcg
ctagatgcgatgctcaattacatggcttacactaaagatgaaattaaaagcatgatttta
gagcaattagaagaagaattagaagcgcaaaaaagcgcgttaatcaggcgttatgaaaaa
gaagccaaagaagagggtaggaaaaaatcgtatgcaattttagcggaagcgacagcccgt
tttgcgggcgattacgcgacagagaatttaacaacccgtatcgctttgccatgctcagat
tatattggccgtgtgataggcaaagatgggaaaaacattgaagcgtttaaaaagatcagt
ggggtggatatagaatttagcgaagatagtaacgaattgtgtttgtctagtttcaatctt
tatcggcgtgaagtggcgagcgaaacgattaaaattctaatagaagacggccgtatccag
cctaataggattgaagaggtttataatagagttgtgcgtaacatggaaaaagaattgctt
tctgagggagagagcgtggtgttagaattggagcttggggctatggaagatgagcttaaa
atcttgctgggtaaaatgcgttatcgttctagttttgggcaaaacgctttacagcattct
aaagaagtcgcccttttagccggcttgattgcagagcagcttggaggggataaaaagctc
gctagaagggccggtattttgcatgatattggtaaagcgctcactcaagagcttgggaga
gaccatgtgaatttaggggttgaggtgtgcaagcgcaatagagaatatccggtcgttatc
aatgcaatctatgcccaccatgggcatgaagaaatcatgagcgtggagtgcgcgagcgtg
tgtgcggctgatgcgctttctgcggggcgtcctggcgcaagaagaaagagcgatgaagaa
tacgctaaacgcatgcaggctttagaagagatcgcactagggtttgaaggggttgaaaag
gcgtatgcgatggagagcgggcgagaattaagagtgattgtcaaatccaatcaagttagg
gataatcaagtgccaatcattgcaagaaagatcgccaaaaagatagaagagagcgctcaa
tatgtgggcgaagtgggcgtgcaagtggtgcgagaaaatcgtttcaaaaccacagccacg
ctcaagcaataa
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