Haliotis rubra (blacklip abalone): 124257403
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Entry
124257403 CDS
T07967
Name
(RefSeq) squalene synthase-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj00100
Steroid biosynthesis
hrj01100
Metabolic pathways
Module
hrj_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
124257403
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
hrj01006
]
124257403
Enzymes [BR:
hrj01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
124257403
Prenyltransferases [BR:
hrj01006
]
Terpene biosynthesis
Squalene/phytoene synthase
124257403
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
DUF8843
Motif
Other DBs
NCBI-GeneID:
124257403
NCBI-ProteinID:
XP_046547404
LinkDB
All DBs
Position
Unknown
AA seq
412 aa
AA seq
DB search
MDLLRSVSHPDEILALVRYKLGDCRAVLPQCDPELMSPTLRKCYDYLRLTSRSFAAVIQA
LDDELRDSVCIFYLVLRALDTVEDDMTIPNKVKLPILRSFYKNLLDPKWCYTESKEKDRI
VLDDFPTISYEFRQLSAVSREVISDICRQMGEGMCVYMERNVETLADWDEYCHYVAGLIG
IGLSKLFSASGLEGEFVGKDLDLANRMGLFLQRTNIIRDYLEDSEEGREFWPKQVWSKYA
KNLRDFAHPHHRGEAVNCLNDLITRTLELIPDCIKYMSRLQNKSVFQFCAIPQVMAIATL
ERCYSNPSVFTGVVKIRKGEAVKMIMGSSSTEKVKAIMVHYTNEIAGRIPAKDPNAEKTR
KLCEDVLACCKTKHEYTTSSIYPPLYVSCAMMLVAISYNYWSQIEAVYHSMT
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggatttgttacgctcagtgtcccaccctgacgaaattctggcattagtgcgctacaag
ctaggagactgtcgggcagtcttgccacagtgtgatccggagttgatgagcccgactttg
aggaagtgttatgactatctgagactgacgagccgcagctttgctgctgtcatccaggcg
ctcgatgatgaactaagggattcagtgtgcatattttacctggttctacgggctctggac
actgttgaggatgacatgacaatacccaacaaagtgaagctgcccatcctcaggtccttc
tacaagaacctgctggaccccaagtggtgctacacagagagcaaggagaaggacaggata
gtgctggacgacttcccaacgatatcatatgaattccgtcagctgtcagcagtatcaagg
gaagtgatttcagacatatgtcggcagatgggggaaggcatgtgtgtgtacatggagagg
aatgtggagactctagcagactgggatgagtattgtcactatgtggctggactcattgga
attggtctatcaaagctgttctctgcttctggtctggagggggagtttgttgggaaagac
ttggatttagccaacagaatgggtctcttccttcagaggacaaacatcatccgagactac
ctggaggacagtgaggagggccgtgagttctggcctaaacaggtatggagcaagtatgca
aaaaatctgcgtgactttgctcacccacatcacaggggagaagctgtgaactgtctgaat
gatctcatcaccaggaccttggagctcatacctgactgcatcaaatacatgtctcgacta
cagaacaagtctgtctttcagttttgtgcaatcccacaggtgatggctattgctaccctg
gagcggtgctacagcaatcccagcgtgtttactggtgttgtgaagatcaggaagggggag
gcagtcaagatgatcatggggtctagctccacagagaaagtcaaagccatcatggtccac
tatactaacgagattgcaggtcgcattcccgccaaggatccaaatgcagagaaaacaaga
aaactgtgtgaagatgtcctggcctgctgcaagacaaaacatgaatacaccacatcaagt
atctaccctccgctctacgtttcctgtgctatgatgctggtagccatatcctacaactac
tggtcccagatagaagctgtgtatcactcaatgacgtaa
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