Helobdella robusta: HELRODRAFT_170286
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Entry
HELRODRAFT_170286 CDS
T03272
Name
(RefSeq) hypothetical protein
KO
K23600
TAR DNA-binding protein 43
Organism
hro
Helobdella robusta
Pathway
hro03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hro00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
HELRODRAFT_170286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hro03019
]
HELRODRAFT_170286
Messenger RNA biogenesis [BR:
hro03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
HELRODRAFT_170286
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP43_N
RRM_1
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
20203157
NCBI-ProteinID:
XP_009014351
JGI:
Helro1_170286
UniProt:
T1F2V8
LinkDB
All DBs
Position
Unknown
AA seq
387 aa
AA seq
DB search
MNQYVCVAEDEMEELIEVPLEMNGNLLLSTLSAQFPGACGLKYRNPGTGAMRGVRLVDGD
LYPPDGVWSSSRYIVVYPKENADYKRKSDESSEKPQAKTKKVDRLKCSDLIVLGLPWKST
EEDLTNYFTKYGELLMVQVKKDPKSGQSKGFGFIRFADYESQRQCLSQRHLIDGRWCDVK
IPSSKMDDSDSPISRKLFVGRCTEDMSTDDIREFFSSYGEVVDVFIPKPFRAFAFVTFSD
PDVAQNLCGEDFIIKGNSVRCSSAAPKGYGYDKKGSWVSKLGGGDHRNSGWSYSGSTDKS
MQGANLVPHAAADLAAMQFGPAFNQAVIAATQAALAQSGWMSMGGASNGQGGYHQTRESN
GMSYAASKNTNSYTTGSGGYAANSYSM
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagtacgtttgcgtagctgaggatgaaatggaagaactcattgaggtaccgtta
gaaatgaacggcaaccttctcttgagcacgttgtctgcccagtttccaggagcctgcgga
ttgaaatatcgaaatcctggaacgggagccatgcgaggtgttcgacttgttgatggtgat
ttgtatccaccagatggcgtctggtcttcatctcgttacattgttgtgtatcctaaagaa
aatgctgattataaaagaaagagtgatgaaagcagtgaaaaacctcaagccaaaacgaaa
aaagttgatagactgaagtgttctgaccttattgtacttggtctgccctggaaaagtacg
gaagaggatttaaccaattacttcacgaaatatggagagttgttgatggttcaagttaaa
aaagatccgaagtctggccaatcaaaaggtttcgggttcatcaggtttgcagattatgaa
tctcaaaggcagtgtttgagccaaagacatttgatagatggacgatggtgcgatgttaaa
attccttcctctaagatggatgattctgattctccgataagcagaaaactgtttgtcggt
cgttgcacggaagatatgtcaactgatgacattcgggaatttttctcttcgtatggagaa
gttgtggatgttttcataccgaaaccattcagagcatttgcttttgttaccttctcagat
cctgatgttgcccagaatctttgtggggaagacttcattatcaagggcaacagtgttcgt
tgtagtagtgctgcaccaaaaggatatgggtatgacaaaaaaggatcttgggtttcaaaa
ttaggtggtggtgatcacaggaattctggttggagctattctggatctactgacaaatca
atgcagggggcgaacttggtgccacatgcagcagctgatctagcagcaatgcagtttggt
ccagcattcaatcaagctgtcattgctgctacacaagctgcactggcacaaagcggctgg
atgtctatgggtggtgcatctaatggccaaggaggatatcatcagactcgtgaatctaat
ggaatgtcatatgctgccagcaagaacaccaacagttacactaccggctccggtgggtac
gctgccaacagttactccatgtaa
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