Hirundo rustica (Barn swallow): 120765181
Help
Entry
120765181 CDS
T09369
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120765181 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120765181 (SKIC3)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120765181 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_14
TPR_16
TPR_8
TPR_11
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_9
ANAPC3
ARM_TT21_C
TPR_6
TPR_15
Retrotran_gag_2
Fis1_TPR_C
ARM_TT21_2nd
BTAD
TPR_5
TPR_30
PknG_TPR
TolB_N
TPR_20
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
120765181
NCBI-ProteinID:
XP_039945663
LinkDB
All DBs
Position
Z:complement(55655772..55703865)
Genome browser
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAK
GAYKKAIELEPNQLLAWQGLANLYEKPSQTDVKGDLADVYQKLLELYESGDKQKWCDVCN
KLVELYHQEKKYLEVAETWQKLIRMKQEEGAEKTELHQLWKKMIQLLKDSTRDQDNKTGQ
LLLTAFEHALHSADTVPGEDHKNLYKDFIECLLKFPHEVARLEKACHDMMALYPTMSYPL
EILCLHFVQSGTLSEKALHCFSRLLEMDADSGPGIIGFGIKCLKENKYKEAVKSLTEGLQ
KTNQCPAAWYYLAEAQMKLHEHRNAVLSCNQALEALGNPEGPNFQWKNLALQLKAETLIK
IADADAAEEAIKALEQIVDGSSDPVVLALRGQAYLNKGLMDQASKISQELLLSHPHLAEA
HALEGYIHYSQKDYEQAEKSFLNAIERKAETAEYHQYLGLTYWFMSDETKKDKGKALTHF
LKAAKLDSYLGSTFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGTAAVNLSVELG
DMETALSILNEVTEKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCWE
SLGEAYLNRGSYSTALKSFRKASELNPGLVYSIYKAAALEQILGKYENAIATYQQILKKT
ENYVPALKGLGECYLMLARSALDNFFDRKAVDYIEQALAYFTRAVKHRPDVSCLWKLLGD
TCTTVHVISPAKVNVQVLGSLLSKNTTKETLKKNELLILGGRCYGRALKLMSLPSIWCDL
GINYYRQAEHLTAVGSDVNEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSAVGN
YALAQHSFIKSVQAEQINVVAWTNLGVLYLATGNIEQAHEAFKIAQSLEPSYLLCWIGQA
LIAETIGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLLDKANRNTELYLYNIVQMNAI
PAAQVVLSKYTERNPDDASAFTMFGFLNEYLHLKQQAAYAYERAASLLKNSEDTERYNTA
MQNYGRSLCALGLCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIKAYEKALSVAE
SEKDKAHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCALGLVKQDATLATA
ALKELLKHEKGDDGIYERCLIASAVYALQGRNVAIQREVSKAIHSYPGNPALWSLLSRLV
PLYALKKSKGGAVAGSVAHTLDINHGKEVLLNIAVNQLVAGCHMLEDKKNNPLKNIQKAI
HVCPDNPAAWAVLMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKTGESNLPRSYVHT
LEDWCLCQAITSLEETGKLSEAEALCNKGLKSCPEHPALFLLLRQVQCKQLLQSHKELPD
NILEELHKTVMSCSSSAAAWQWLAKIYQSQRMMTGAEMCYRKSLQLASQQGSWNGKLSSL
LRLAMLALEICMANVPNEHWPSLVQEATTEALKLSPCPLAALLQALLQYNRKIGARETRR
MLERVVYQPANPETIASVARWYLLQHLYAKDDCELIDVLIENAKANGDVRVLELNEKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcactaaagagtgctagagatgcaataagaaataaa
gaatataaggaggccttaaaacattgcaaggcagtcttgaagcaagaaaaaaataactat
aatgcttgggtattcattggcctcgcagctgctgagttagagcagcctgatcaggccaaa
ggagcatacaagaaggctattgaacttgaaccaaaccagttactggcatggcagggattg
gcaaatttgtatgagaaacccagccaaacagatgtcaaaggagacttagcagatgtttac
caaaaactcttggaactctatgaaagtggcgacaagcagaaatggtgtgatgtatgtaac
aagcttgtggaactataccatcaagaaaagaaatatttagaggtggctgaaacttggcag
aaactaataaggatgaaacaggaagaaggtgcagaaaagacagagcttcatcagctttgg
aagaagatgatccagttactgaaagacagtacaagggaccaggataataagactgggcag
ttgcttttgactgcatttgaacatgcactgcactctgctgacactgttcctggtgaagac
cacaaaaatctttacaaagacttcatagagtgcttgttaaaatttcctcatgaagtagct
aggttggaaaaggcctgtcatgatatgatggctttgtaccctactatgagttaccctttg
gaaatactttgcttgcactttgtacagtcaggtactttgtcggaaaaggccctgcactgt
ttctctaggcttttggagatggatgcagacagcggtccaggcatcattgggtttggtata
aaatgcctcaaagaaaataaatacaaggaggctgttaagagtcttactgaaggtttgcag
aagactaaccagtgtccagcagcctggtattatttagcagaggctcagatgaaactccat
gaacacaggaatgctgtcctgtcctgcaatcaagctcttgaagctcttggaaatcctgag
ggtcctaattttcagtggaagaaccttgcccttcagttgaaagcagagactttgattaaa
atagctgatgctgatgctgcagaagaagctattaaagcacttgagcagattgtagatgga
agcagtgatccagtggttttagctctcaggggtcaggcttatctaaacaaaggtttaatg
gatcaggcttcaaagatttcacaagagcttctgttgtcccatcctcatctggctgaggcc
catgctctagagggttacatccattattcccaaaaggactatgagcaggcagaaaaaagt
tttctaaatgctattgaaagaaaggctgaaactgcagagtatcatcagtacctggggctc
acatactggttcatgagtgatgagacgaaaaaagacaaaggaaaagcactcactcatttc
ttgaaggctgcaaagttggacagctacctgggaagcaccttttgttatctaggtaactac
tacagagacatcgctggagacaaaagtagagctcgcggctgctataaaaaggctttcgaa
ctggatgagacagatgaagaatctggtacagcagctgtcaacctaagtgtggaacttgga
gacatggagaccgctctctcaatcctgaatgaagtaactgaaaaagcaagacctggtaca
gcaaaatgggcctggcttcatcgtggactttactacttgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcagctctcagggctgatccaaaggattccaactgctgggag
tctctaggggaggcttacttgaacagaggtagctactcaacagctctgaaatccttcagg
aaagcgagtgagctcaatccaggacttgtgtacagcatttacaaagctgcagcacttgag
cagattttaggcaaatatgaaaatgctatagctacctatcaacagattttaaagaagaca
gaaaactacgtgcctgcactgaaaggacttggtgagtgttacctcatgctggcaagatca
gcccttgataacttttttgataggaaggctgtggattacatagagcaggcccttgcatat
tttacaagggcagtaaagcaccgtcctgatgtatcttgcctctggaaactgttaggagat
acctgtactactgtgcatgttatttcaccagccaaagtgaatgttcaagtactaggatcc
cttctgagtaaaaatacaaccaaagagacactgaagaaaaatgagcttctaatactggga
ggaaggtgttatggcagagctttaaaactgatgtctttgcctagcatatggtgtgatctt
ggaataaattattatcgacaagctgagcatctcacagcagtgggcagtgacgtgaatgag
atcagtgaactgctagagaagtctttgcagtgtctcaaaaaggctgtgagacttgacagc
aaaaatcatctttattggaatgcacttggtgtagttgcttcttgtagtgctgttgggaat
tacgctcttgctcaacactcgttcatcaaatctgttcaagctgagcaaattaatgttgtt
gcctggaccaacttgggggttttgtatctggcaactggaaacattgagcaagctcatgaa
gccttcaagatagcccagtctctggagccttcttacctgttgtgttggattggacaggct
cttattgcagagaccataggcagctatgataccatggatctcttcaggcacacgactgaa
ctcagtatgcatactgagggagcaaaaggctatgcccactgggtatgttcaacactgctg
gacaaagccaataggaacactgaactgtatctgtacaacatcgtccaaatgaatgccata
ccagcagcccaagtggtcttgagcaaatatacagaaagaaatccagatgatgcttctgct
ttcacaatgtttgggtttttgaatgagtatctgcatttaaaacagcaggcagcctatgcg
tatgagagggcagcttcactgctgaaaaactcagaggatactgagagatacaatacagca
atgcaaaactatggcaggtcactgtgtgctcttgggctgtgtgatgaggccattgaagtt
tacacatcaatacccctaactgagtttgatggcattgtgggcctagcgttagcttacttc
aagaaaggactcttagaagaaagcatcaaagcctatgaaaaagccttgtctgttgctgag
tctgaaaaagataaagcacatatcctgaccgccttggcaataatagaatataaactgaac
aaagtggatgctgcaaagacactgctgtttaaatgctcattaaaggaacctagtacggaa
agtctgaaggctttgtgtgcactgggattggtaaagcaggatgcaacacttgcaacagca
gctctgaaagaattactgaagcatgaaaaaggggatgatgggatttatgagagatgtctt
attgcatctgctgtttatgcattgcaaggtagaaatgtggcaatccagagggaagtctcc
aaagcaatacacagttaccctggtaatcctgccctttggtcccttctgtctcgactagtt
ccactgtatgcattaaaaaagtctaaaggaggagctgtggccggaagtgttgcacataca
cttgatataaaccatggaaaggaagtcctgctgaatattgcagttaaccagttggtagca
ggatgtcacatgttagaagataagaaaaacaatcctctgaaaaatattcagaaggccatc
catgtctgtccagataatcctgctgcttgggcagtgttaatggcagcctgtcatgctgaa
aacactgttgtctgtctaaacaacactgaaccgaaacgaacaggtctagagatgacactt
gtttctacagtttcagccaaaactggagaaagtaatcttccacgtagttatgtccatact
cttgaagattggtgtctgtgtcaagctattaccagtctagaggagactggtaaactatca
gaagctgaagctctttgtaacaagggtttaaaaagctgccctgagcacccagctctgttt
ttgcttttgagacaagttcagtgtaagcagctgttgcagtctcacaaagaacttccagac
aacatcctggaggaacttcacaaaaccgtcatgtcctgttcatcctcagctgcagcttgg
caatggctggcgaaaatatatcagtctcagagaatgatgaccggagcagagatgtgttac
cgtaagagtctgcagttggcatcacagcagggcagctggaacgggaagttatccagtctg
ctcaggctagctatgctcgcactggaaatctgcatggctaatgtcccaaatgaacactgg
ccatccttggttcaggaggcaacaacagaagctttgaaactttctccttgccccttggca
gctctgcttcaagccctgctacagtataatcgcaaaattggagcaagggagactcggcga
atgctggagagagttgtttatcaaccagcaaatccagaaaccatagcatcagtggcacgc
tggtacctcctacaacacctatatgccaaagatgattgtgaattaatagatgtgcttata
gaaaatgccaaagctaatggagatgttagagttctggaattaaacgagaaattgtcagca
agtgcctag
DBGET
integrated database retrieval system
