Hymenobacter sublimis: MWH26_14955
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Entry
MWH26_14955 CDS
T09379
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hsb
Hymenobacter sublimis
Pathway
hsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MWH26_14955 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsb03021
]
MWH26_14955 (rpoC)
03400 DNA repair and recombination proteins [BR:
hsb03400
]
MWH26_14955 (rpoC)
Enzymes [BR:
hsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MWH26_14955 (rpoC)
Transcription machinery [BR:
hsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MWH26_14955 (rpoC)
DNA repair and recombination proteins [BR:
hsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MWH26_14955 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
A_thal_3526
Motif
Other DBs
NCBI-ProteinID:
UPL48484
UniProt:
A0ABY4J9J1
LinkDB
All DBs
Position
complement(3572499..3576851)
Genome browser
AA seq
1450 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPESILERSNGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGVLAEEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPNKFIARMGADALQLLLERTNLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRIENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTDDEQIQ
GEGRMFYSDEEVVIALNEGQLSKHAYIKVRTQVRDEEDNLVTKIIETVAGRVLFNQLVPT
EVGFVDELLTKKKLQQIISMVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDIQIP
KEKDALVLQAQNDVKAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLEKENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEVDCGTLRGIETFALKDNEDV
VEPLAERILGRVAVHDIVDPLTDEVILAAGEEITEEITRRIDNTSIESVEIRSVLTCESK
RGICGKCYGRNLSSGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEASLR
AKFAGVVEFEDIRTVETANADGESVKVVMGRSGEIRIVEKGTGKVFISNHVPYGSFLLVD
EGQEVEKGQELNNWDPYNAVILAEFDGTIQYDAITEGITYREESDEQTGHREKVIIESKA
KDQNPAIIVRPGKKGDMEGSKGYSIPVGSHLNVENGEKIKAGQILAKIPRAVGKTRDITG
GLPRVTELFEARNPSNPAVVSEIDGVVTYGTVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGAPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTSFLEHQVIDKIIFMEENDTIIDMKVVTNAGDSTNLKPGQIVTARR
LRDENSSLRRRDLQLVEVRDAQPSVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYTRQIVGSKEELEAQQAAKTEEAAAPTKRPA
RASRRESVSE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcaaaaaacaagaaactggtacaggacttctcgaaagttactatttcgctg
gcctcgcccgaatccattctggagcggtcgaacggtgaagtagtaaagcccgagacgatc
aactaccggacgtacaagcccgagatgggcggcctgttttgcgagcggattttcggtccc
gtaaaggactgggaatgccactgcggcaagtacaagcggattcgctacaaaggcatcatc
tgcgaccggtgcggcgtggaggtgaccgagaagaaagtacgtcgggagcggatgggccac
atcgaactggtggtgcccgtagcgcacatctggtacttcaagtccctacccaacaaaatc
ggctacctgctgggcctgcccaccaagaagctcgaccagattatctattacgagcggtac
gtagtcgtgcagcccggtgtacttgccgaagaaggcgtacagcagctggacttcctcacc
gaagacgaatacctcgacatcatcgacaagctcccccgggagaaccagatgctgccgaat
gaagaccccaacaaattcattgcccggatgggggcggatgccctgcagctgttgctggag
cgcaccaacctcgacgagctttcctatagtctccgcgactcggccgcgcacgaaacttcg
cagcagcgtaaagctgaggcgttgaagcgtctgcgcgtggtagaagcgttccgcgacgcg
gctacccgcatcgagaacaagcccgagtggatggtaatccgcatggtaccggtgattccg
ccggaactgcgtcccctcgtgccgttggacggtggccgtttcgccacttccgacttgaac
gacctgtaccgtcgcgttattatccgcaacaaccgcctcaagcgcctgatcgaaatcaag
gctcctgaagtgattctgcggaacgagaagcgcatgctgcaggaagctgttgactcgctc
ttcgacaactcgcgtaaggtgaatgccgtgcgcgccgaaggcaaccgggccctgaagtcg
ctgtctgatatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgt
gtcgactactctggccgttcggtaattgtggtaggtcctgagctgaagctgcacgagtgc
ggtctgcccaagaacatggcggccgagctgttcaagccgtttatcatccgtaagctcatt
gagcgcggtatcgtgaagacggtaaaatcagcgaagaaaatcgttgaccgcaaggacgcc
gtagtatgggacatcttggagaacgtgctgaaaggccaccccgtgctcctgaaccgtgct
cctaccctgcaccgcttgggtatccaggcgttccagccccgcctcatcgagggcaaagct
attcagctgcacccgctggtttgtacggccttcaacgctgactttgacggtgaccagatg
gctgtgcacgttcccctgggaccggctgctattctggaagcctccatgctcatgctggcg
tcgcacaatattctgaacccggccaacggcgcgcccattgcggtaccgtcgcaggacatg
gttctgggcttgtactacgtgactaaaggcaagcgcagcaccgacgacgagcagatccag
ggcgaaggccgcatgttctactcggatgaggaggtagtaattgccctgaacgaaggtcag
ctctcgaagcacgcctatattaaggtgcgcacgcaggttcgcgacgaagaagataacctc
gttacgaagatcatcgagaccgtagctggccgcgtgctgttcaaccagctcgtgcccacc
gaagtaggtttcgtggatgagctgctgaccaagaaaaagctgcagcagattatttcgatg
gtgttcaagcggaccggcatggcccgcaccgcacagttcctcgacgacatcaagacgctg
ggtttccagtcggcttacaaaggtggtttgtcgatgggtctgggcgacatccaaattccg
aaagagaaagatgccctggttctgcaagcgcagaacgacgtgaaggccgttactcagaac
taccagatgggtctgattaccgacaacgagcgttacaaccaggttattgacatctggacc
cgcatcaacaaccaaatcactgaaacccttatgggtcgcctcgaaaaggagaaccagggc
ttcaactcgatttacatgatgatgcactccggcgctcgtggctcgcgtgagcagattcgt
cagctcggcggtatgcggggtctgatggctaagccgcaaaagtcgttgcagggctcagta
ggtgagattatcgaaaacccgattctgtctaacttcaaagaaggcctggacgtaatcgag
tacttcatttcgacccacggtgctcgtaagggtctggctgacaccgctctgaagacggct
gacgccggctacctgacccgtcgtctggtagacgtatcgcaagacgtcatcgtgaacgag
gtggactgcggtaccctgcgtggcatcgaaaccttcgccctgaaggataacgaggacgta
gtagagccgttggctgagcgtatcctaggccgcgtggccgttcacgacatcgtggacccg
ctgacggacgaggttattctggcggctggtgaggaaatcaccgaggaaatcacgcgtcgc
atcgacaacactagcatcgaatcggtggaaatccgctcggtactgacctgcgaatcgaag
cgtggtatctgcggcaagtgctacggccgtaacctgtcgtcgggccgcatggtccagaag
ggcgaagcggttggcgtaattgctgcccagtccatcggtgagcctggtacccagctgacc
ctgcgtaccttccacgtaggtggtacagcttctaacattgccgttgaagctagcctgcgc
gctaagttcgccggggtggttgagttcgaagatatccggactgtagaaaccgcaaacgcc
gatggcgagtcggtaaaagtagtgatgggtcgctcgggcgaaatccgcatcgtggagaaa
ggcaccggcaaagtgttcatctcgaaccacgttccctacggctctttcctactcgttgac
gaaggtcaggaggtagagaaaggccaggagctcaacaactgggacccttacaacgccgtt
attctggccgagttcgacggtactatccagtacgacgccatcacggaaggtattacctac
cgcgaggagtcggatgagcagacgggtcaccgcgagaaagtaatcatcgaatcgaaggcg
aaggaccagaaccccgccatcatcgtgcgccccggcaaaaagggcgacatggaaggttcg
aaaggctactctatcccggtaggttcgcacttgaacgtcgagaacggcgagaaaatcaaa
gccggtcagattctggccaagattccgcgtgccgtgggcaaaacccgcgatattaccggt
ggtctgccccgtgttacggaactcttcgaagcgcgtaacccctcgaacccggccgttgtg
tcggaaatcgacggcgtggtaacctacggtacggtgaagcgtggtaaccgtgaaatcttc
gtggagtcgaaagacggcgtgaagaagaagtacatggtgccgctgtccaagcacatcctg
gtgcaggacaacgacttcatccgcgcgggtgctccgctttccgacggtgctattacgcct
tcggacatcctgagcatccagggccccggtgccgtgcaggaatacctcgtgaacgagatt
caggaagtataccgcttgcagggtgtgaaaatcaacgataagcacattgaggtggtagtt
cgccagatgatgcagaaagttgtgattctcgacgctggcgacacgtcgttcctcgaacac
caggtaatcgacaagattatcttcatggaggaaaatgataccatcatcgacatgaaggtg
gtaaccaacgccggcgactcgaccaacctgaagcccggtcagattgtgacggctcgccgc
ctgcgcgacgagaacagcagcctgcgccgccgcgacctgcaactggtggaagtacgcgac
gcccagccgtccgtatcccgcccgaccctgcagggtatcacgcaagcttcgttgggtacc
cagtcgtttatctcggccgcttccttccaggaaacgaccaaggtgctgtcggaagccgcc
atccgtggcaaggccgacgaactgctgggcctgaaggaaaacgtaatcgtaggccacctc
atcccggccggtaccggtctgcgcgagtatacgcgtcagatcgtcggctcgaaggaggaa
ctggaagcccaacaggctgccaagaccgaagaagctgcggctcctaccaagcgtcccgcc
cgcgcttcgcgccgcgagtccgtttcggagtaa
DBGET
integrated database retrieval system
