Halomonas aestuarii: BOX17_10375
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Entry
BOX17_10375 CDS
T04554
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
hsi
Halomonas aestuarii
Pathway
hsi03030
DNA replication
hsi03410
Base excision repair
hsi03420
Nucleotide excision repair
hsi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BOX17_10375 (ligA)
03410 Base excision repair
BOX17_10375 (ligA)
03420 Nucleotide excision repair
BOX17_10375 (ligA)
03430 Mismatch repair
BOX17_10375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsi03032
]
BOX17_10375 (ligA)
03400 DNA repair and recombination proteins [BR:
hsi03400
]
BOX17_10375 (ligA)
Enzymes [BR:
hsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BOX17_10375 (ligA)
DNA replication proteins [BR:
hsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BOX17_10375 (ligA)
DNA repair and recombination proteins [BR:
hsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BOX17_10375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BOX17_10375 (ligA)
MMR (mismatch excision repair)
DNA ligase
BOX17_10375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BOX17_10375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
APE31317
UniProt:
A0A1J0VH29
LinkDB
All DBs
Position
2249006..2251054
Genome browser
AA seq
682 aa
AA seq
DB search
MSQADPHVIDEVARLRAELDDANYRYYVLDEPRLTDADYDRRLRRLQQLEEAHPELVTAD
SPTQRVGAAPDAGFPEVQHAVPMLSLDNAFNEEEIKAFVRRVADRLETHGDPLAFCCEPK
LDGAAVSLVYERGELVTGVTRGDGRTGEGITSNLRTLRSIPLSLRGDAPPDLLEVRGEVI
MSHEGFEALNDRARESDGKVFANPRNAAAGSLRQLDPKITATRPLEFSAYQVARIEPQPG
DASHSQLMARLGDLGFRTSRELTVVEGAEGVIDYCRELGEKRDALGYDIDGVVIKVDDLR
LQRELGFVARAPRWAIAFKFPAQEETTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSN
ATLHNADEIARLDVMIGDTVAVRRAGDVIPQVVRVLEERRPADARAIVFPEHCPACGSQI
EHLEGEVVARCSGGLYCPAQRKEALKHFASRRALDIDGLGEKLIEALVERDWVTTPADLF
RLEAERLAELPRMGRKSSENLVAALEKARQTTLGRFIFALGIREVGEATAANLARHFGSL
EALMGADIEALEAVEDVGPIVAAHVHTFFRQPHNRETIDDLLACGLTWEEQEVGERPQPL
AGQSWVLTGTLASMTRDEGKARLQALGAKVAGSVSRKTACVVAGEAAGSKREKADQMGVE
VIDEDEFLRRLARWEAGEDDHG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagccgacccccatgtcatcgacgaggtggcgcgcctgcgtgccgagctcgac
gacgccaactaccgctactacgtgctcgatgagccccggctgaccgatgccgactacgac
cgccggctgcgtcgtcttcagcagctcgaggaggcgcatccggagctggtgaccgccgac
tcgcccacccagcgggtcggggccgcgcccgacgccggcttccccgaggtgcagcacgcc
gtacccatgctctccctggacaacgccttcaacgaagaggagatcaaggccttcgtccgg
cgcgtcgccgaccgcctcgagacccacggcgacccgctggccttctgctgcgagccgaag
ctggacggagctgccgtctcgctggtctacgagcggggcgagctggtcaccggcgtcact
cgcggcgacggccgcaccggcgagggcatcacctccaacctgcgcaccctgcgctccatc
ccgctcagccttcgcggcgacgcgccccccgacctgctggaggtgcgcggcgaggtgatc
atgagccacgagggcttcgaggcgctgaacgaccgggcccgggagtcggatggcaaggtc
ttcgccaacccgcgcaatgccgccgcgggtagcctgcgccagctcgacccgaagatcacc
gccacccgcccgctggagttcagcgcctaccaggtggcgcgcatcgagccccagccgggc
gacgccagccacagtcagctgatggcccggctcggcgacctcggctttcgcaccagccgc
gagctgacggtggtggagggagccgagggcgtcatcgactactgccgcgagctcggcgag
aagcgtgacgcccttggttacgacatcgatggggtggtgatcaaggtcgacgacctgcgc
ctgcagcgcgagctgggcttcgtggcccgtgccccgcgctgggccatcgccttcaagttt
cccgcccaggaggagaccacccggctcaacgacgtggagttccaggtcgggcgcaccggc
gcgatcaccccggtggccaggctcgagccggtctcggtggccggcgtcactgtctccaac
gccaccctgcacaacgccgacgagatcgcccgactcgatgtgatgatcggcgataccgtg
gcggtccgccgggccggcgatgtaatcccccaggtggtgagggtgctggaggagcggcgc
ccggcggatgcccgggcgatcgtcttccccgagcactgcccggcctgcggttcacagatc
gagcacctggagggcgaggtggtggcgcgctgctccggcgggctctactgtcccgcccag
cgcaaggaggcgctcaagcacttcgcctcccggcgagccctggacatcgatggcctgggt
gagaagctcatcgaggcgctggtcgagcgagactgggtgaccaccccggcggacctgttc
cggctcgaggccgagcgcctcgccgagcttccgcgcatgggcaggaagtcctccgagaat
ctggtggccgccctcgagaaggccaggcagacgacgcttggccgcttcatcttcgccctg
gggatccgcgaggtgggcgaggccaccgcggccaacctggcccgccacttcggcagcctg
gaggcgctgatgggggccgatatcgaggcgctggaggccgtggaggacgtgggccccatc
gtcgccgcccacgtgcataccttcttccgccagccccacaaccgcgagaccatcgacgac
ctcctggcctgcggcctgacctgggaggagcaggaggtcggcgagcgcccccagcccctg
gcggggcagagctgggtgctcacgggcaccctggcgagcatgacccgcgacgagggcaag
gcgcgactccaggcgctgggcgccaaggtggcgggcagcgtctcccgcaagaccgcctgc
gtggtggccggggaggccgccggcagcaagcgggagaaggccgaccagatgggggtcgag
gtcatcgacgaggacgagttcctgcgccgcctggcgcggtgggaagcgggggaggacgac
catggatga
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