Hippoglossus stenolepis (Pacific halibut): 118102796
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Entry
118102796 CDS
T08308
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp02010
ABC transporters
hsp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118102796
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118102796
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsp02000
]
118102796
Transporters [BR:
hsp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118102796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC2_membrane_3
ABC_tran
R1_ABCA1
AAA_21
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
118102796
NCBI-ProteinID:
XP_035005203
LinkDB
All DBs
Position
23:complement(7318004..7482236)
Genome browser
AA seq
2235 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKVRLVVELIWPLFLFFILVWVRTTNKPIYKSQCHYPNKA
MPSAGVLPWLQGMICNINNPCLNYPTPGEAPGQVNNFNNSIIAGVLIELQSLVENRSILR
EAKLLADDIDQWSSVLSQSNPGNAQPVTLKNVLRDDETFSKHLKENLSVSPAVVESLLNA
TIYLNPERPGDLRTLLCDGTGLDEYVQFSSQAEKEAFQNVSCSLTRQQLINTQQVLRQNL
DVSKMLSEVPQSLGLDAADTVRLVGRTTQNALPVIEELSRLQNSMVFQAARSLNFQDDMI
GSINMLLCGNQPDSTNMTLSLRSPGQMDNNESISITGNSSDAFCQTLVDTLESTPGLRNI
WSTFKPLVQGKVLYTPDTPAARLMVNKANGTFQALATLKELADSWEELGPRIWDFFQNSS
QVNALRALLENPVFAAALDQRLNGTGWTAELLANFLYNGPPEDRPPGMPTNDWRDAFNAT
TQIMKLISNFLGCLDLNKFEAVPDESHLVSKALELLDNDTYWASVIFENLQPNSSQPPPY
VKYKIRMDVDEVERTNSVKERLWSPGARDNSFNDLRYIWGGFAYLQDMMDHGITKVQTSK
TQPLGVFAQQMPYPCFVDDVFLRSLSRSLPLYMTLAWIYSVAMIVKSIVGEKEARIKETV
RIMGLRSAIYWLSWAVSSLLLLAVSAVLLALILKYGKVLQYSDPSVIFVFLLVFCMSTIT
QCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDIMGFGAKVAVSLLSCVAFGYGC
ENFSKYEEQGIGIQWHNINKSPEEGERYTFLLSIIMMLCDSLIYWILTWYIENVFPGQYG
IPKPWYFPFTASYWCGRASVTRVDTGDLRDYSLHNEYLEKPPPDMKAGVSVRNLVKIYKT
GKKLAVDGLTVDFYENQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGYDILTDMDR
IRKHLGMCPQHNVLFNELTVEEHIYFYARLKGHSRDEVKSEMDQMIEDVGLPHKRKELAK
NLSGGMQRKLSVAIAFVGGSKIVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTHHM
DEADILGDRIAIISQGKMRCCGSSLFLKKSFGSGYYLTLVRDETEKMAAQRNGIIHSQAA
EEKDFPSRSSLDDGIGSQSWGSLDPSDLTAVGQLVRRHVPEAVFLESIGQEITYILPYSG
ARDGTFALLFKELDLAMADLGLTSYGISDTTLEEIFLKVAEDTGVDADIRTVEPVERDCE
RSPRKSKRNSIASLHTTSAQPQQVSGMTELKERFTSKVEDLQRSSAVGGRGSTVITGWEL
IRRQFLALFIKRFHHARRSRKGVIAQVILPVLFVCMSLIFSLIVPPFAEYPSLELQPWMN
GLPQTTFYSNDGPDNVEVSQVVETLVNNPGFGTRCMDGNPLPMLPCSSSGSDWFTPPVDQ
SVSDIFLNGNWSMSNPSPSCQCSTPKRTIMLPDCPPGAGGLPPPQRIQNTTDTLEDLTGR
NMSDFLLKTLEHSGKTRYGGVSVGGLNSQVRLTEGDIEVVFRDLRDLLGSFQDNVTDELL
QKSESLLKKLGTRDNVKVWFYNQAFHGMVSFLGVANNAILRGNLPAGEDPRQYGISVSNH
PLNLTKTQLSFVAMATASSDVVVSICVIFAMSFIPASFVLFLIQERVNKAKHLQFVSGVN
PAVYWLANFAWDMCNYIVPCLIVILIFVAFQQKAYVSPPNLPALILLLIFYGWSITPMMY
PASFIFSVPSTAYVVLTCVNLFIGINGSVATFFMELYDDDSVSNINDIVKQVLLIFPHFC
LGRGLIDMAKNQAMATLFISFGEDRFEDPLSWDMVGKNLCAMSIQGVVMFAVTILIQYKF
FCKPRLISGKSLSAEEEDIDVARERERVYEGKAQNDLLKICDLTKVYSRKSTPAVDRLCV
GVPAAECFGLLGINGAGKTTTFKMLTGDIPVSGGEAVLNGYSIRTEMSEVHQNMGYCPQF
DAIDDLLTGREHLEFYGRLRGVPEHEVAMVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLS
TAIALIGCPPVIFLDEPTTGMDPKARRFLWDCILSVIREGRSVILTSHSMEECEALCTRM
AIMVNGRFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALKPVEDFVLQTFSGSVLKEKHHN
TLQYQLPYTQGALATIFSQFTIHQQRLGVEDYSVSQTTLDQVFVNFARHQHIEEEAQGYD
NPVDTSDEKPVAEKV
NT seq
6708 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagttcactctgctcctgtggaagaacttcactctgcgtaagaga
caaaaggtgcgactggtcgttgaactcatatggcctctgtttctcttcttcatactggtg
tgggtgcggaccaccaacaagccaatttacaaaagccaatgtcactatccaaataaagcc
atgccgtcggccggcgtgctgccgtggcttcaaggtatgatctgcaacatcaacaacccc
tgtttgaactacccgacgcctggggaggcaccaggccaagtcaacaacttcaacaactcc
ataattgctggtgtgttgatagagctgcagagcctggtggagaacagatccattctcagg
gaggcaaagttgctggcggacgacatcgaccagtggtcctcagtcctgtcacagtcgaac
cctgggaatgctcaaccagtgaccctgaagaatgttctgcgagacgatgaaacgttctcc
aagcacctgaaagagaacttgtcggtgtcaccggcagttgtggaaagcctcttaaatgcc
acgatttacctcaacccagaacgaccgggcgacctgaggacgctcctgtgcgacgggacc
ggtctggatgagtacgtccaatttagcagccaagctgagaaggaggcttttcaaaatgtc
agctgctccctcactcgacagcagctgattaacacccagcaagtgctccggcaaaacctg
gatgtgagcaaaatgctgtctgaggtgcctcaatctctgggcctggatgcagcagatacc
gtgagactggtggggagaaccactcaaaatgctttacccgtgattgaggagctgtcgagg
ttgcagaactccatggtctttcaggcggcgcgttcattgaatttccaagacgacatgatt
ggcagtatcaatatgctgctgtgtggaaatcagcccgactctaccaatatgaccctcagt
ttacgctcacctggacaaatggataacaacgagtcgatctccattacgggcaacagttcc
gatgctttttgtcagacccttgtcgacaccctggagagcacacctggtctgcgcaacatt
tggagcacgttcaagcccttagtacaaggcaaagtcctctacacacccgacacacctgct
gcccgcctgatggtgaacaaagcaaatggcacattccaagctttggccacgttgaaggag
ctggccgattcgtgggaggagcttgggccccgcatctgggatttctttcaaaacagctct
caagtgaatgcattacgggctctgctggagaacccagtgtttgctgccgccctcgaccag
cgtctcaacggcacgggatggacggccgagctgctcgccaacttcctgtacaatgggccc
ccggaggatcgtccacctggaatgccgaccaacgactggagggacgctttcaacgccacc
actcagatcatgaagctcatctccaacttccttggctgtttagacctgaataagtttgag
gcagttcccgatgaaagccatctggtgagcaaagcactggagctcctggacaacgacacg
tactgggccagtgtcatctttgaaaacctgcagcccaactccagccagccccctccttat
gtcaaatacaagatccgcatggacgtcgatgaagtggagcgcaccaacagcgtcaaagaa
aggttatggtctcctggggcccgagacaattcctttaacgacctgcgctatatatgggga
ggcttcgcctacctgcaggatatgatggaccacggcattacaaaagtgcaaacgtcaaag
acccagcccctcggagttttcgcccagcagatgccatacccctgtttcgtggatgacgtg
ttcctccgctccctgtcccgctcgctccccttatacatgacgttagcctggatctactcg
gtggccatgatcgttaagagtatcgttggcgagaaagaggcgcggatcaaggagacagtg
aggatcatgggcctgaggagtgccatctattggctgagctgggcagtgtcgagtttgctt
ctgctggccgtcagcgccgtcctccttgcccttatactgaagtacgggaaagtgctgcag
tacagcgacccctcggtgatcttcgtcttcctgctggtgttctgtatgtccaccatcact
cagtgcttcttcatcagcgtcttcttctctaaggccaacttggcggcggcgtgcggcggc
ctcatctactttgtcctctatctgccgcacatcctctgctacgcctggagggacatcatg
ggtttcggggccaaggttgccgtgagtttattgtcatgtgtggccttcggctacggctgt
gagaacttctccaagtacgaggagcaaggcatcggtatccagtggcacaacatcaacaag
agtccagaggagggtgaacgctacaccttcctactgtccatcatcatgatgctctgtgat
tccctcatatactggatcctcacctggtacattgaaaacgtctttccaggccaatatgga
atccctaagccgtggtacttccctttcactgcgtcttactggtgtggcagagcctcagtg
acccgtgttgacaccggtgatttgagggactacagcctacataatgaatatctggagaaa
ccgccgcccgacatgaaggccggggtctcagtccgcaatcttgtcaagatctacaagacg
ggaaagaagctggccgtcgacggactgaccgtggacttctacgagaatcagatcacatct
ttcctcggccacaacggagccggaaaaaccaccacaatgtcaatcctgacaggactgttc
ccgcccacatcgggcaccgctctcatcaacggatacgacatcctcactgacatggacagg
atcaggaagcatttgggaatgtgcccacagcacaacgtcttattcaatgagctgacggtg
gaggagcacatctacttctacgcccggctgaaaggacacagccgcgacgaggtgaaaagt
gagatggaccagatgattgaggacgtcggtttaccacataagaggaaggagctcgctaag
aacctgtcgggcggcatgcagaggaagctttccgtggccatagcgtttgtcggaggatca
aaaatcgtcatcttggatgaaccgacggcaggagtggacccctacgcccgcaggggcatc
tgggaactgctgctcaaatacaagcaaggtcgcaccatcatcttgtccacgcaccacatg
gacgaggcggacatcttaggggaccgcatcgccatcatctcccagggcaagatgcgttgc
tgcggctcctcgctcttcttgaagaaaagctttggcagcggctactacctcaccctggtc
cgagacgagaccgagaagatggccgctcagcgtaacggtatcatccacagtcaggccgca
gaggagaaagacttcccttcgaggagcagccttgatgacggcatcggcagccagagctgg
ggcagcttagatccctcagatctgacagctgtgggtcaactcgtgcggcgccacgtcccc
gaggcggtcttcttggagagcatcggtcaagagatcacctacatactgccctacagcgga
gccagagatgggacctttgctctgctcttcaaagagctcgacctggccatggctgacctc
ggcctgaccagctacggcatctctgacaccacactggaggagatatttcttaaagtggca
gaagacactggagtggatgcagacattcgaacagtggagccggttgagagagactgcgag
aggagcccccgcaaatccaagcgaaacagcatcgccagcctccacacaacatccgcacaa
ccacaacaagtctccgggatgactgagttgaaggaacgatttacaagtaaagtggaagac
ttgcagaggagcagcgcagtcggcgggaggggatccaccgtcatcaccgggtgggagctg
atcaggaggcagttcctggcgctctttatcaagcgcttccaccacgcccgcaggagccgc
aagggagtcattgcccaggtgatcctgcctgttttgttcgtgtgcatgtctctgatcttc
tcactcatcgtcccgccgttcgctgaatatcccagtctggagctgcagccctggatgaac
ggcctgcctcaaaccacattttacagcaacgacgggccagataacgtggaggtgtctcag
gtggtggaaacgctcgtgaacaaccctggatttgggactcgctgcatggatggaaacccg
ttaccgatgttgccatgttcctctagtggctctgactggttcactccacccgtagatcag
tcggtcagcgacatcttcctcaacgggaactggagcatgtccaacccctccccttcctgt
cagtgcagcacgcctaaacggacgatcatgttgcccgactgtccccctggagcgggaggg
ctccctccacctcagaggatccagaacacgacagacacattggaggatctcaccgggcgg
aacatgtcagacttcctactcaaaactttggagcactcgggtaaaacgaggtacgggggt
gtatctgttggaggactcaactcacaagtccgtctcactgagggagatatcgaggttgta
ttcagggatctgagagacctgctcggttcatttcaggataatgtcactgatgaactctta
cagaagtctgagtcgctgctgaagaagctgggaaccagggacaacgttaaggtgtggttc
tacaaccaggcatttcacggcatggtgtctttcctcggtgtggccaacaacgccatcctg
aggggaaacctgccggcgggagaggatccccgccagtacggcatctccgtgtccaatcac
cccctcaacctcaccaagacgcagctctcctttgtggccatggccacagcctccagcgac
gtggtggtgtccatctgcgttatcttcgccatgtccttcatccctgccagcttcgtcctc
ttcctcatccaagagcgggtgaacaaagccaagcatctgcaatttgtcagcggcgtgaac
ccggctgtgtactggttggccaattttgcctgggacatgtgtaactacatcgtcccgtgt
ttgattgtgattctcatcttcgtcgccttccaacaaaaagcctacgtctcgccccctaac
ctgcctgcgctgattttgctgctcattttctatgggtggtccatcacccccatgatgtac
cccgcctccttcatcttcagcgttcccagcacggcctacgtggtgctgacctgcgtcaac
ctcttcatcggtatcaacggcagcgtggccaccttcttcatggagctctatgacgatgat
agcgtctccaacatcaatgacatagtgaagcaggtgctgctgatattcccacatttctgt
ctgggcagagggctgattgacatggccaagaaccaggcaatggccacgctcttcatcagc
tttggggaggaccgtttcgaggatccactcagctgggatatggtgggaaagaatctctgt
gccatgtccatccagggagttgtcatgtttgccgtcacaatcctcatccagtataagttc
ttctgcaaaccgaggcttatttctgggaagtcattatctgcagaggaggaggatatcgat
gttgcacgggagcgtgagcgagtgtacgaaggcaaagcccagaatgacctcctgaagatc
tgtgacctcaccaaggtatactctcggaagagcacccccgctgtggacaggctatgcgtg
ggcgtacctgctgcagagtgtttcggcttgctgggaatcaatggggctgggaaaactacc
acgttcaagatgctgacaggagatatcccggtctctggtggagaggccgtcctaaatgga
tacagcatacggacggagatgagcgaggtgcaccagaacatgggctactgtccccagttt
gacgccattgatgacctgctcacaggacgggaacatctggagttttacggcaggttacga
ggagtgccagagcacgaggtcgccatggtggcagagtggggaatccagaagttggggctc
gtcaaatattccaacaaatcggcagggacctacagcggtgggaacaagcgcaaactttcc
acggccatagccctgatcggctgtcctccagtcatctttctggatgagccgactactggg
atggatccgaaggcccgccgtttcttatgggactgcatcctgagtgtcatcagagaggga
cgctcagtcattctcacttcacacagcatggaggagtgcgaggccctgtgcacacgcatg
gccatcatggtaaacggtcgcttcaagtgtctcggcagcatccagcatctgaagagcaga
ttcggagatggctacacggtgatcgtgcgggtcgggggctctcctccggccttgaagccc
gtcgaggactttgtcctgcagaccttctcgggcagcgtcctgaaggagaagcatcacaac
acgctgcagtaccagctgccgtacacacagggagcactggccaccatcttcagccagttc
accatccaccagcagcggctcggtgtggaggactactctgtgtcacagaccactctagat
caggtgtttgtgaatttcgcgaggcaccagcacatcgaggaggaggctcagggctacgac
aacccggtggacacctcagatgagaagcccgtcgcagagaaggtgtaa
DBGET
integrated database retrieval system
