KEGG   Hippoglossus stenolepis (Pacific halibut): 118105092
Entry
118105092         CDS       T08308                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118105092 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsp03019]
    118105092 (cstf1)
Messenger RNA biogenesis [BR:hsp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     118105092 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta CSTF1_dimer Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_NWD2_C Ge1_WD40 PROPPIN Beta-prop_SPT8 Beta-prop_WDR11_1st VPS8_N Frtz
Other DBs
NCBI-GeneID: 118105092
NCBI-ProteinID: XP_035008385
LinkDB
Position
3:complement(28342776..28353642)
AA seq 431 aa
MYRPKPTLKDRQHLYKLIISQLLYDGYTSIANSLISEVKPPSVVSPSEQLMQLAKTGMEN
DDSAVQYAIGRSDTVAPGVGIDMEFDADMQSMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPSEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVSYNPSANSYVSCSKDGSIKLWDGVSNRCVTTF
DKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISAGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtatcgtcccaagccgaccctgaaggaccggcagcacctgtacaagctcatcatcagc
cagctcctctacgatggctacaccagcatcgccaacagtctcatcagcgaggtgaagccc
ccgagcgtcgtgtcgccctctgagcagctgatgcagctggcgaagacagggatggagaat
gacgacagtgcggttcagtatgccatcgggcgctcagatacagtggcaccaggagtaggc
atcgatatggaattcgatgctgacatgcagtcaatgtctccagaggcatcagagtatgag
acctgctatgtaacatctcataagggtccctgccgggtcgccacctacagccgcgatggc
cagctgattgccacgggctctgctgatgcctccatcaagatcctggataccgagcgcatg
ctggccaagagtgccatgcccattgaggtgatgatgaatgagacagctcagcaaaacatg
gagaatcaccccgtgattcggacactgtacgaccacgttgatgaagtcacctgtctcgcc
ttccatccgagtgaacagattctggcttccggctcaagagattacaccctcaaactgttt
gactactcgaagccctcagcaaaaagagcgtttaaatatatacaggaagcagaaatgttg
cgctcaatctccttccacccatcaggtgacttcctgctggtgggaacgcagcaccccacc
ctccgcctctatgatgtcaacaccttccagtgctttgtgtcctgtaacccgctggaccag
cacacagacaccatcagcggtgtcagctacaacccctcggccaacagctacgtcagctgc
agcaaggatggcagcatcaagctctgggatggtgtctccaaccgctgcgtgaccaccttc
gacaaggcccacgatggcgcggaggtttgctctgccatcttctccaagaactccaaatac
atcctgtccagtggcaaagactccgtggtgaagctgtgggagatctctgcaggccggacg
ctggtcaagtacacaggtgcaggtttgagcggacgtcagatgcatcgcacgcagggcgtg
ttcaaccacacggaggactacgtgttgctgcctgacgagcgcaccatcagcctgtgctgc
tgggactcacgcacggctgagaggaaaaacctgctgtctctgggacacaacaacatcgtg
cgctgcatcgtccactcgcccaccaatcccggcttcatgacctgtagcgatgacttcagg
gctcgtttctggtaccgccgcaccaccacagactga

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