Hippoglossus stenolepis (Pacific halibut): 118106693
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Entry
118106693 CDS
T08308
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04120
Ubiquitin mediated proteolysis
hsp04140
Autophagy - animal
hsp04144
Endocytosis
hsp04620
Toll-like receptor signaling pathway
hsp04621
NOD-like receptor signaling pathway
hsp04622
RIG-I-like receptor signaling pathway
hsp05132
Salmonella infection
hsp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118106693 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118106693 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118106693 (traf6)
04140 Autophagy - animal
118106693 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
118106693 (traf6)
04621 NOD-like receptor signaling pathway
118106693 (traf6)
04622 RIG-I-like receptor signaling pathway
118106693 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118106693 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
118106693 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118106693 (traf6)
04121 Ubiquitin system [BR:
hsp04121
]
118106693 (traf6)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118106693 (traf6)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
118106693 (traf6)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
118106693 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
TRAF6_Z2
U-box
zf-RING_5
zf-RING_11
TRAF3_RING
zf-TRAF_2
BLI1
CEP104_ZnF
DM
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
118106693
NCBI-ProteinID:
XP_035011316
LinkDB
All DBs
Position
1:5070640..5078330
Genome browser
AA seq
595 aa
AA seq
DB search
MACYDVNKGSLEEDSFDGAVGGELSSCALAMLERERESLLSPSETSGTLILSNSASLQAD
VPLQGYDVEFDPPLESKYECPICLMALRNAVQTPCGHRFCKNCIEKSIRDTGQRCPVDNE
MLTEDQLFPDNFAKREILSLTVRCPNSGCDDEMELRHLENHLAQCQFATATCPQCQQFVR
KSHLEEHTTVECQRRPVSCPDCVACFVYEESELHEQQCPFANVNCQYCEMDLIRDQIESH
CDTDCPKAPITCNFSTFGCKERMQRHDLAQHMQEFTQMHMWYMAEFLRGLSLNGSTPKSL
WANGPSVSSEDQGAAASLSSSGGLRGAAASLSSSGGLRGAAGGGGGGGGGGGGGATSCAS
AQPNEETQRLREMDGRLVKQDHRLRELSILKETQAGQLAELRSRVSMLEDTVKELEAQQC
RGIFIWRLKGFSAHMRNQEAGLAVVEHSPGFYTGYPGYKLCLRLHLQTPNALRCSNYISL
FVHTMQGAFDGELTWPFQGTIRLAILDQGPEGQHHVEVMETKPDLQAFQKPTIQRNPKGF
GYVTFMHLHQLKQRAYVKDDTLLIRCDVTSRFDNMPNREGPAVQPRGPEASVSRD
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctatgatgtcaacaaggggagtctggaggaggatagcttcgatggagctgtt
ggtggagagctgtctagttgtgccttggcgatgctggaaagagagcgagaatcccttctc
agcccatcagagacgtctggcaccctcatcctcagcaactccgccagtcttcaggctgat
gtgcccctccagggctacgacgtggagtttgacccgcccctggagagtaaatatgagtgt
cccatctgcctcatggctcttaggaatgctgttcaaacaccctgcggtcaccgtttctgc
aagaactgcattgagaaatccattcgtgacacaggacagagatgccccgtggacaacgaa
atgctgacagaagatcagctgtttcctgataactttgccaaacgagagattctatcacta
acggttcgctgtccaaactccggttgtgatgatgaaatggagcttcgacatttggagaat
catttggcgcagtgtcagtttgcgactgcgacttgtccacagtgccagcagtttgtgaga
aagagccacttagaggagcacacaaccgttgagtgccaaaggagacctgtgtcgtgcccg
gattgtgtggcatgcttcgtctatgaggagagcgagcttcacgagcagcagtgtcccttt
gctaacgtgaactgtcagtactgtgagatggatctcatcagagaccagattgaatctcat
tgtgacacagattgcccaaaggcacccatcacctgtaactttagcacctttggatgtaag
gaaaggatgcagcgccatgacctggctcagcacatgcaggagttcacgcagatgcacatg
tggtacatggctgagttcctgcgtggcctgagcctcaatggcagcacgcccaaatccctg
tgggcaaatggaccttctgtttcttctgaggatcaaggagctgcagcatcgctatcttcc
tctggtgggctcagaggagctgcagcatcgctatcttcctctggtgggctcagaggagct
gcaggcggcggcggcggcggcggtggtggcggtggtggtggcgccaccagctgtgcttcg
gctcagcctaatgaagagacgcagcggctcagagagatggacggacgattggtgaagcag
gatcatcggctacgtgagctctccatcttaaaggaaacacaggcaggtcagcttgcagag
ctccggagtagggtgtcaatgctggaggacacggtgaaggagctggaggcccagcagtgc
cgcggtatcttcatctggcgcctcaaaggtttctctgcccacatgcggaaccaagaagct
ggtctcgcggtggtcgagcacagccctggcttctacacgggctacccaggctacaagctg
tgcctgcgtttacacctgcagacgcccaacgccctgcgctgctccaactacatctccctc
tttgtccacaccatgcagggagcttttgacggggagctgacctggccgttccaaggcacc
atccggctcgccatcctcgaccagggccctgagggtcagcaccacgtggaggtgatggaa
accaaaccagacctgcaggcctttcagaagcccaccatccagcgcaatcccaaaggattt
ggctacgttaccttcatgcacctgcatcagctgaaacagagagcctatgtcaaagatgac
accttacttatccgctgcgatgtgacgtcgcgttttgacaatatgcctaatcgtgaggga
ccagcggtgcagcctcgagggcccgaggcatcggtttcaagggactaa
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