Hippoglossus stenolepis (Pacific halibut): 118109188
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Entry
118109188 CDS
T08308
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118109188 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118109188 (cnot1)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118109188 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118109188 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118109188
NCBI-ProteinID:
XP_035011961
LinkDB
All DBs
Position
5:complement(24682113..24702988)
Genome browser
AA seq
2399 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLIKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLSEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPSLNFKEVTYE
LDHAGFSIRDSKGLQIVVYGIQRGLGIEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHNVATDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKLC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSLSMDPLSG
MGSLNLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQL
PGMDSGPLSTGISSSIGASLGMPTVSTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLA
LAQVQAQSQSQPPGGPKAPQPGPPSTLVTPSTTTTTAAKTTTITRPTPSTFKKDVPPSIN
TTNIDTLLVATDQNERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVS
QYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSL
LKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMV
FRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKC
LEEQLSAPKKEAKPPEELLPVSTTVFCPTGDFVPFAAPPSTPAATTTACTTTGPPTPQFS
YHDINVYALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMT
TCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALR
APTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGR
RYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQP
MKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQSLRSLLEAVALARNSRDGIA
ALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIEC
RDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVS
HVTEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGIS
QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHGQGILKTDDLITR
FFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTV
TKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT
AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP
FLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP
RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELR
SNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggctttgtctcagatcagctatctggtggacaattta
ataaagaaaaactaccgagccagccagcaagaaatacaacatattgtgaatcgtcacggt
cccgaggcagacaggcatctactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcgaagccaaactttatctccactctgtgttacgccattgacaatcccctacac
taccagaagagtttgaagccatcggcccatttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggttatatttggacttgctttgctcaattccagcaacacagac
cttcgcggctttgctgcacagttcgtcaagcagaaacttccagatctcctgcggtcatac
gttgacgctgatctcggaggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcacctactgctctcccatcttctgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatccta
ccagactcgggggagttggctaagaccatgatggagagttctctctcagaattcatgcaa
gaagttggctatggcttctgtgcaagtgtggatgagtgcagaaatataatcctccaatat
ggggtgagagaggtgacggccagccaggtagccagggtcctaggcatgatggctcgcacc
cactctggcctaactgatggcatccccctacagtccatctctgctccaggtagtggtatc
tggagtgatggtaaggataagaacgacggctcgcaggcccacacgtggaatgtcgaggtt
ctcatcgacgttgtcaaagaagttaatcccagccttaacttcaaagaggtgacgtacgaa
ctggaccacgcagggttttcaatccgtgacagtaaaggcctgcaaattgtggtgtacggc
attcagaggggattgggcattgaggtgttccctgtcgatctcatctatcggccatggaaa
cacgcagagggacagctgtcgttcattcaacactccttgatgagtccagaagtgttttgt
tttgctgactacccctgtcacaatgtggccacggacatccttaaggcaccaccagaggat
gacaaccgggagattgccacatggaaaagtctggacctggttgagagcctgctcaggctg
tccgaggtgggccagtacgagcaggtgaagcagttgttcagcttcccaatcaaactctgc
cccgacatgttggtgttggcattactgcagatctccacctcctggcacacactgcgccat
gagctcatctcgaccctaatgcccatctttctgggcaaccaccccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccatccatccgtcagttaataatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaagccaagctgtctcgcatc
ctggacgtggcccaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgacctcgctgcacttgcctcgcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaaccgtttatccaggcgtgtgtgacattccta
aagaggcgctgcccatccattatggggggtctggcccctgataaggaccagcccaaaagt
gcccagcttccgcctgagaccttagccacaatgctggcctgcctgcagtcctgtgctggg
agtgtgtcccaggagttgtcggagactatcctcacgatggtcgccaactgcagcaatgtg
atgaataaagctcggcagccaccaccaggggtgatgcccaagggacgtgcccccagcacc
agcagcctggatgccatctcacctgtacaggtatctttaagtatggaccctctatctggc
atgggttccttgaacttagggggcacagccacctcacacactcagagcatgcaaggtttc
cccacctcactgagttcagcttttagtaatccccagtccccagctaaggccttcccccca
ctgtccaaccccaaccccagcacaccatttgggggaattggcagtctgtcctcacagctc
cctggtatggactctggtcccttgagcacaggcatcagctctagcattggcgctagcctg
gggatgccaactgtaagcactgacccgtttggcaccaggaagatgagcacaccaggcttg
aatccacctacctttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcac
tttagcaaagagatagacgatgaggcaaacagttacttccagcgcatctacaaccaccca
cctcacccgaccatgtccgtggatgaagtactcgagatgctgcagaggttcaaggattca
accatcaagcgggagcgagaggtcttcaactgcatgcttcggaacttgtttgaggaatac
cggttcttcccccagtacccagacaaggagctgcacatcactgcctgcctttttggtgga
attatcgagaagggtctcgtcacctacatggcccttggcttagccctccgatatgtcctt
gaagccttaagaaaaccctatggatccaaaatgtattactttggaatagctgccctagat
aggttcaaaaacagactaaaggactatcctcagtattgtcaacacttggcttcaattgcc
cacttcttgcagtttccccaccatttacaagagtgtgtgcagtatatcgagtatggccaa
cagtcacgggaccctccggtgaagatgcaaggctccatcaccacacctggtagtctggca
ctggcacaagttcaagcccagtcccaatcgcagccacctggtggccctaaagccccacaa
ccaggtccgcccagcaccctcgtcaccccctccacgactacaaccacagcagcaaagacc
accacaattacaagaccaacgcccagcaccttcaagaaggatgtgccgccctccataaac
actaccaacattgacacactgctggtggcgactgaccaaaacgaaagaattgtagagcct
ccagagaatgtccaggagaagatcgcttttatcttcaacaacctgtcccagtccaacatg
acacagaaggtggaggagttgaaagagactgtgaaggatgagtttatgccctgggtgtct
cagtacctcgtgatgaagcgtgtcagcattgagcccaacttccacagtctgtactccaac
tttctggacactctcaagaacccagagtttgtcaagatggtcctcaatgagacttacagg
aacatcaaggtgctcttgacctcggacaaggcagctgccaatttctctgatcgctccctg
ctgaagaatctgggccactggttggggatgataacactggctaagaacaagcccatcctc
tatacagatctggaagtcaagtctctgctactagaagcctacgtgaaaggccagcaggaa
ttactctatgtggttccctttgtggcgaaggttttggaatctagtctgcggagcatggtt
ttcaggccccagaatccctggactatggccatcatgaatgtccttgctgagcttcatcag
gaacatgacctcaagcttaacttaaagtttgaaattgaagttctgtgtaagaacttgtct
ctggacataaatgacctgaagcctggaaccctcctgaaggacaaggacaagctgaagtgt
ctagaggagcaactttctgcaccaaagaaggaggcaaaacccccagaggagttgctacca
gtctctaccacagtcttttgtccaacaggggactttgtcccattcgcagctcctccctca
accccagctgccaccaccaccgcctgcacaaccactgggcccccgaccccacagttcagt
taccatgacatcaatgtgtacgccttggctggcctggctccacacatcaatataaatgtc
aatatccctctgctacaggcccatcctcagttgaagcagtgtgtacggcaatcagtagag
cgagccgtccaggagctagtgcatcctgtggttgatcgctctattaaaattgctatgaca
acctgtgagcagatcatcaggaaggactttgccctggattcagaggagtcccgcatgcgg
gtcgctgcccatcatatgatgagaaacctgaccgctggcatggccatgatcacctgccgc
gagccgctgctcatgagcatcgccaccaacctgaagaacagttttgctgctgctctcagg
gcaccaaccccacaacaaagggaaatgatggaagaggctgctgctcggatcgctcaagac
aactgtgaattagcttgttgtttcattcagaaaacggctgtggagaaggctggtcctgaa
atggacaagagactggccacggagtttgagctgaggaagcacgcacgccaggagggacgg
cgttattgtgatccggttgtcctgacttaccaagctgaacgtatgcccgagcagataaga
ctcaaggtgggaggagtggacccgaagcaactggctgtgtatgaggagtttgccagaaat
gttcccggtttcctccccagtaatgatctctcacaacccactggcttcctggctcagccc
atgaagcaacaggcatgggccacagacgatgtggctcagatctacgataagtgcatggca
gacttagagcaacatcttcatgctatcccccccgccctcgccatgaaccccttgacccag
tccctgcgcagcctgctggaggcagtggctttggcacggaactccagggacggcatcgcc
gcacttggcctcctgcagaaggctgttgaaggtcttctagatgccactagtggggctgat
gccgacctgctgctccgctacagagagtgccacctgctggtgctcaaagccctgcaggac
ggacgtgcctatggaccacagtggtgcaataagcagatcaccaggtgtctgatagaatgc
cgtgatgagtacaaatacaacgtagaagctgttgagcttctgatcaggaaccatcttgtg
aatatgcagcagtatgacttacacctggcacagtctatggaaaatggattgcactacatg
gcagttgcgttcgccatgcagttagtgaagctgctgctcgtagatgaacgcagtgtcagc
catgtcacagaggctgacctcttccacaccattgagactttgatgaggacttgtgcacac
tccagagccaacgcacctgagggtcttccccagctcatggatgttgtccgctccaattac
gaagccatgattgaccgggcccacggtggacccaactttatgatgcactctgggatttca
caggcttcagaatacgacgatcccccaggcctgagggagaaggcggagtacctcttgagg
gaatgggtgaacctgtatcactcagctgctgctggcagggacagtaccaaagcattctct
gcctttgttggccagatgcacggacagggaatcttaaagactgatgacctgatcacaagg
ttctttcggctgtgcacagaaatgtgtgtggagatcagctatcgggcacaagctgagcag
cagcacaacccagcagccagcgcagccatcatcagagccaagtgttaccacaacctggat
gcctttgtgaggctgatagccctgctggtcaaacactctggagaggccaccaacacagtg
acaaagatcaacctcctcaacaaggtgctgggtatcgttgttggggtgttgatccaggac
catgatgtccgtcagacagaattccaacagctgccataccaccgcattttcatcatgctg
ctgttggagctcaatgctcctgaacacgtccttgagaccatcaacttccagacactcact
gccttctgcaataccttccacatcctgagacccaccaaggcccctggctttgtgtacgcc
tggctggaactcatctcccatcgcatcttcattgccagaatgctcgcgcacacaccacag
cagaagggttggcccatgtacgcacagctgctgattgatctcttcaagtacctggcacct
ttcctgaggaatgtagaactcaacaaacctatgcaaatcctctacaagggtacactgcga
gtgctcctggtcctgctgcacgacttcccagagttcctgtgtgactatcactacggcttc
tgtgacgttattccacccaactgcatccagctccgcaacctcatcctcagtgccttccca
cgcaacatgaggctcccggacccgttcacacccaatctcaaggtggacatgctgagtgag
atcaacatcgctccccgtatcctcaccaacttcacgggcgtcatgccttcccagttcaag
aaggacctggactcgtatctgaagacccgatcaccagtcactttcctctcagagctgcgc
agcaacctgcaggtgtccaatgagccaggaaatcgctacaacatccagctgatcaatgct
ctcgtgctgtacgtaggcacacaggccatcgctcacatccacaacaagggcagcacgccc
tccatgagcaccatcactcactctgcacacatggacatcttccagaacctggccgtggac
ctggacactgaggggcgttacctgttcttgaacgcgatcgcaaatcagctgcgttacccc
aacagtcacacccactacttcagctgcaccatgctctacctgtttgctgaagccaacaca
gaggccatccaagagcagatcaccagggttctgctggagaggctgatcgtgaacaggcct
cacccctggggtctcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttc
tggagccacgactttgtgcactgtgcccctgagattgaaaagctgttccagtccgtagcc
cagtgctgcatgggacagaagcaggcccagcaggtgatggaaggcaccagtgccagctag
DBGET
integrated database retrieval system
