KEGG   Hippoglossus stenolepis (Pacific halibut): 118111393
Entry
118111393         CDS       T08308                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:hsp01009]
    118111393 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsp03036]
    118111393 (kdm5bb)
Enzymes [BR:hsp01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     118111393 (kdm5bb)
Protein phosphatases and associated proteins [BR:hsp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     118111393 (kdm5bb)
Chromosome and associated proteins [BR:hsp03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    118111393 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHDvar_NSD PHD-1st_NSD PHD_2
Other DBs
NCBI-GeneID: 118111393
NCBI-ProteinID: XP_035015845
LinkDB
Position
6:4905847..4920807
AA seq 1536 aa
MSQPRPDEFQPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKVRPPPGWQPPFACD
VDRLHFVPRIQRLNELEAQTRVKLNFLDQIAKFWDLQGCALKIPHVERKILDLYKLNKLV
ADDGGFDLVCQDRRWTKIAHTMGFAPGKAVGSHLRGHYEKILYPYNLFQSGANLLAPEAA
SKLMRLEADPELDECVQKPVQSVESTGSLESEDTKELKLQDPAQRPTAQTPDTCPSARRA
KRMKCEAMCVKTEPGEPGESKPNLRRRMGSFVAKPEPEKEIPILVKVEPVEIKEPIIEAD
KSKSRYKKFIPPVPPSPVDLVVCLVCGSGGDEDRLLLCDGCDGSYHTFCLIPPLHDVPKG
DWRCPKCLAQECNKPHEAFGFEQAYRDYSLRAFGQMADAFKSDYFNMPVHMVPTELVEKE
FWRLVGAIEEDVTVEYGADIASKEFGSGFPIPNGKLKLSQADEKYLKCGWNLNNLAMMNP
SILTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQ
LEEVMKKLAPELFESQPDLLHQLVTIMNPNTLMAYGVPIYRTNQCAGEFVITFPRAYHSG
FNQGFNFAEAVNFCTVDWMPLGRQCVDHYRMLHRYNVFSHDEMVCNMASKAGTLDVVLAS
AVHKDMVAMLREEKEIREKVKKMGLVHCKEARYDHLQDDERQCVKCRTTCYLSAITCPCS
PGVLVCLHHINDLCSCPVSNYTLNFRYTLDKLFPMMNAVKQRSERYDEWASRVAETLEAK
LEKKRGLPVFRSLLAESETRLFPENDLLRRLRLVTKDAEKCSSVAQQLLNGKRQTRYRCG
SGKSRSQLTVEELSSFVRQLYNLSCCLPQAPKLKVLLNRIEDFQQHSEKVLADQVPSVAE
IQSLLDVSFEFDVDLPELPRLRVRLEQARWLEAVQQASAQPAALTLETMRRLIDQGVGLS
PHPSVEKAMARLQEQLTVSEHWEDKASGLLKARPPHSIETLSAAAEKASGLTAHLPNCLL
LKDTIRKAREWLQEAEELQATGCILMVDSLSDMVLRGHAIQVHLEPLDQLESLMVEVQEW
KDSAATTFLQTDSALTLLEVLSPRIDFGNIGSPKRKIKKGKESPKSNKKKTPGLNSLTDV
ERALSEHKDSTSAMATLEELQVREMEAFSNLRAANESKLLPTADCMDLKVCVCQKAPMGA
MLQCELCRDAFHSVCVRDTSDPCKTQPWLCPQCQRAEKPPLNKVLSLQSSLRRIGVRLPE
GDALHHVVERTLNWQHEAQQISKMCNLPELEERPGTPPTLTSWVSGSHETQDNTQAPSLT
PEWNRTSHAQTVFYTEQRCIPLQGLSRELEELMVEGLLLQVSLPEVQSLYHTLLDRATSQ
QTNRCMLPPQDEAADADVHTQFNSQGKNLPLNQEGVNAMRDIMTGSEKKVKRHLDNKKHS
HKRQKINKKNLQRRTASTSSSPRSDFSQSDESDEEMAVCPAERCQLPEGDEVNWVQCDGS
CNQWFHQVCVGVTAEMAEKEDYICVRCTLSDGHMRK
NT seq 4611 nt   +upstreamnt  +downstreamnt
atgagccagcctcggccggacgagttccagcctcctccggagtgcccggtcttcgagccc
agctgggaggaattcgccgaccccttcgccttcatcaacaagatccgtcccatcgcggag
aaaacgggcatctgcaaagtccggccgcccccgggttggcagcctccatttgcctgtgat
gtggacagacttcactttgttcctcggatccagaggctcaatgaactggaggcccagacc
agagttaagctcaacttcttggaccagattgccaaattttgggatctgcagggatgtgcc
ctgaagattcctcacgtggagaggaagattttggatctgtataaactaaacaagctggta
gcagatgacggtggttttgacctcgtctgtcaggacaggcgatggactaagattgcacac
acaatgggcttcgctcctggcaaagcggtcggctcacacctgcgagggcattatgagaaa
atcctctacccctacaatctgttccagagtggagcaaacctgctggcaccagaggcagct
tccaaactgatgcgtttggaggctgatcctgaacttgacgagtgtgttcagaagcctgtc
cagtcagtggagagcacaggaagcctggagagcgaggacaccaaggagctcaagctgcag
gacccggctcagaggccaactgcccagacgcccgacacgtgccccagtgctcgcagagcc
aagcgcatgaagtgtgaggccatgtgtgtgaagactgaaccaggagaacctggggagagc
aagcccaacctgaggcggaggatgggttcgtttgttgccaagccagaaccagaaaaagaa
attcccattcttgtgaaagtggaaccagtggaaattaaagaaccaataattgaagcagac
aaatcgaaatcacggtacaagaaattcatccccccagttcctccgagtccagtggatctg
gttgtgtgtctggtgtgtggcagcgggggagatgaagaccgtctgttgctgtgtgacggc
tgtgacggcagctatcacactttctgcctgatccctcctctgcacgacgtccccaaagga
gactggaggtgccccaagtgtctggctcaggaatgcaacaaacctcatgaggcatttggc
tttgaacaagcatacagagactactccctgcgtgcttttgggcaaatggcagatgctttt
aaatcggattacttcaacatgccagttcatatggtacccacagagctggtggagaaggag
ttctggcgtttggttggagccattgaagaggatgttaccgtggaatacggagcagatatt
gcctcaaaggagtttgggagtggattcccaattcccaatggaaaattaaagctctcccaa
gctgatgagaaatacctcaagtgtggctggaacctcaacaacctggcgatgatgaacccc
tctatcctgactcatgtgactgctgacatctgtgggatgacgctgccatggctttatgtt
ggcatgtgcttctcctccttctgctggcacattgaagatcactggagctactccatcaac
tacctgcactggggagaacccaaaacctggtacggagctcctggctttgcagcagaacag
ctggaggaagtgatgaagaaactggccccggagcttttcgagtctcagcctgatctgctg
caccaactagtcaccatcatgaaccccaacaccctgatggcctatggagtcccaatttac
agaacaaatcagtgtgctggtgaatttgtcatcacgtttcccagagcttaccacagcggc
ttcaatcagggcttcaactttgctgaggcagtcaacttctgcactgtggattggatgcct
cttggcaggcagtgtgtggaccactatcgaatgctgcaccggtacaacgtgttctcccac
gatgagatggtgtgcaacatggcctcgaaagcaggaacacttgatgtggtcctggcctcc
gccgtccacaaggacatggtcgccatgctccgagaggagaaggaaatcagagaaaaagtc
aagaaaatggggctggttcattgcaaggaggcaagatatgaccacctccaggatgatgag
cgacagtgtgtcaagtgcaggaccacctgctacctgtctgccatcacctgtccctgtagc
ccaggggtactggtctgtctgcaccacatcaacgacctgtgctcctgccccgtctccaac
tacacactgaatttcagatacacactggacaagctgttccccatgatgaatgctgtgaag
cagcgatctgagcggtacgacgagtgggcctcccgtgtggccgagactctcgaggccaaa
ctggagaagaagagaggcctgccagtctttcgctccctcctcgctgaatcagagaccagg
ctgttccccgagaacgacctgctgcgtcggctgcgtctggtcacaaaagacgcagagaag
tgctcctcggtggcacagcagctgctgaacggcaagaggcaaaccaggtatcggtgtgga
agtgggaaatcacgaagccagctgaccgtggaggagctgagttcgtttgtgaggcagctg
tataacctctcctgctgcctccctcaggctccgaagctgaaggtactcttgaaccgtatc
gaagactttcagcagcacagcgagaaagtcctggcagaccaagttccgagcgtcgctgag
atccaaagcctgctggacgtcagctttgaatttgacgtggacctgccggagcttcctcgc
cttagagtgaggctggagcaggctcgctggctggaggcagtgcagcaggccagcgcccag
cccgccgccctgactctggagaccatgaggcggctcatcgaccaaggagtcggcctgtca
ccccatccgtccgtggagaaagccatggctcgtcttcaggagcagctcacggtgtctgag
cactgggaggacaaggcgagcggcctcctcaaagccagaccaccacactccatagagacc
cttagtgctgctgcggagaaggcgtctggtctcaccgctcacctcccaaactgtctgctc
ctgaaggacaccatcagaaaggcccgggagtggcttcaagaagctgaggagcttcaggcc
actggctgcattctgatggtggacagcctctctgacatggtgctacgaggacatgccatc
caagtccacctggaacctttggaccaactggagtcgttaatggtagaagtgcaggaatgg
aaagattctgcagcaacaacttttcttcagacagactcggctcttaccttactggaggtt
ctgtccccaagaattgactttggaaatattggttctccaaagaggaagatcaagaaaggc
aaagagtcaccgaaaagtaacaaaaagaaaacgccaggactcaactctctcactgatgtg
gaaagagcactttcagagcacaaggattctacctctgcaatggcaactctggaggagctg
caggtgagggagatggaggctttctctaatctcagggcagcaaatgagtctaagctcctt
cccaccgcagactgcatggacctcaaggtgtgtgtctgtcagaaggcgcccatgggtgca
atgctgcagtgtgaactctgcagggatgccttccacagtgtgtgtgtcagagacacatcg
gacccctgcaaaacacagccgtggctctgtccgcagtgccagcgagcggaaaaacccccc
ttgaacaaagtcctctccctgcaatcctctctgcggcgcataggggtgcgcctgccggag
ggcgacgctctgcaccatgtggttgagaggacacttaactggcagcatgaagcacaacag
atttcaaagatgtgtaacctaccggagctggaagaaagaccagggactccccccactctc
accagctgggtgtcaggcagccatgaaactcaagacaacactcaggcgccctccttgact
ccagagtggaacaggacaagccatgctcagactgtcttttacaccgagcagagatgtata
ccgctgcagggcttgagtcgggagctggaggagctgatggtggaggggctcctgctgcag
gtgtctctgccagaggtgcagagcctctaccacacgttactggaccgagccaccagccag
caaacaaacagatgcatgttgcctccacaggacgaggccgcagacgctgacgtacacacg
cagtttaactctcagggaaaaaatctgccactgaaccaggagggagtcaacgccatgagg
gacattatgaccggctcagaaaagaaagtgaagcggcatttggacaacaaaaaacattct
cacaaaagacagaagataaataagaagaatctgcagcgcagaacggcgtcaacctcgtcc
tccccgcgctctgatttctcccagtctgacgaatctgatgaggaaatggccgtgtgtcca
gcagagaggtgtcagctgcccgagggagatgaggtgaactgggtccagtgcgacggcagc
tgtaaccagtggtttcaccaggtctgcgtcggcgtcacagctgagatggcggagaaggag
gactacatttgtgtcaggtgcacgctgagcgacggacacatgagaaaatga

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