Hippoglossus stenolepis (Pacific halibut): 118117366
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Entry
118117366 CDS
T08308
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118117366 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118117366 (ndc1)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118117366 (ndc1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
UNC-79
Motif
Other DBs
NCBI-GeneID:
118117366
NCBI-ProteinID:
XP_035025441
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All DBs
Position
11:19320338..19328841
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AA seq
670 aa
AA seq
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MFSTEQSCWFIRKVICWRAAASIAWAVLLLPPITAVFVILSRFSLLHPIHTLSECFSLLT
SASAIFSFILLCGVILMVGFLNLEYYTVIPTIACSKIAMLGQLLHPRQILNSLAHCIMGI
VVAWSCAVTIGGRYEKLGYTCMQSEGPPQMCLNEYHLVFLLAGAFVGLSHSLLGVIHNMN
YVSFHTVQQYKYLRFKGSLPLVVKCSATQALYSVRNFIVVYFFLGYIPRVWICKTLNLHL
NSSIHPLDSIAGLLDLSLLYQLWISATFLLFTWYITLLLFRIFVTEVYSFPVQSSFTEDA
HQCLPKVVTDQQPIILKFLALQDLALLSQHSPSRRYEVFSLSQPGGHPHNWNAISRECLS
LLADLTQRLVAYHDTVATNGRAKSLSTGSERKTSSETSVTSGSEDFMSPRPNLLMKTPAS
VFARSIVGGPQSPLTAPFTPDLDSPFASPALRRLTAPVEQCSPWHGSVQSPHIMRRGPKL
WSTSTDAQVNGSPPPPSPASVPSPQQEPSKPSLLAQFLQNRKEQVKHFLAKRVLIMYLFN
KLPEASSQALFADSQAHIWALEGLSYLVQASFSEDQFGVVQTTLPSILGCMLVLQEAVDR
HFKLPHASSKPLRSSSSMGDSNYKTLRFALRATLKTSIYRITTTFGDHLNAVQMSAEHRK
RLQQFLEYKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttttccacggagcagagctgctggttcatccggaaggtgatttgctggagagctgcg
gccagtattgcctgggctgtcctgttgttgcctcccatcacggcggtttttgtaatcctc
agcaggttcagtcttcttcaccccatccacacgttatcagaatgcttctccttactcacg
agtgcgagtgccatcttctccttcatcctgctgtgtggagtgatcctcatggtgggcttc
ctgaacctggagtattatacagtcatcccaaccatcgcatgctcaaaaatcgccatgctg
ggacaactgcttcaccctcgtcagattttgaactccttggcccactgcatcatgggaata
gttgtggcctggtcttgtgctgtcaccatcgggggcagatatgagaaactcggttacacg
tgtatgcagagtgaaggtccccctcagatgtgtctgaatgagtatcacctcgtctttctg
ctggctggagccttcgttggattgtctcacagtctattgggtgtgatccataacatgaac
tatgtctccttccacactgttcagcaatacaaatacctccgcttcaagggatcgctgcct
ctggtggtgaaatgcagcgccactcaagcactttactctgtcaggaacttcattgttgtg
tatttctttttgggatacattccaagagtatggatctgtaaaacactgaatcttcatttg
aacagctccatccaccctcttgacagcatagcaggcctgttggacctctccctgctctac
caactgtggatcagtgccaccttcctcctctttacatggtacatcacactgctgctcttt
aggatctttgtcactgaggtgtacagttttcccgtgcagtcttcttttactgaagatgcc
caccagtgtctacccaaagttgtgacagaccagcagccaataatattaaagttcttggct
ctgcaggacttggctctgctgtctcaacactccccatcacggcgctatgaggtcttcagt
ctgagtcagccaggtggccatcctcacaactggaacgccatcagtcgggagtgtctgtcg
ctgctggctgatctgacccagagacttgtcgcctatcatgacactgtagcaaccaatggc
agggccaagtcactgtctactggtagtgagaggaagacttcatctgagacatcagtaacc
tcaggttcagaggatttcatgtccccaaggcccaatctgctgatgaaaactccagcatca
gtctttgcccgctccattgtcggaggcccgcagagtcctctgacggcacctttcactccc
gacctggacagccccttcgcctctccggccctgcggcgcctcactgctccagtagaacaa
tgctcaccgtggcacggctcggtgcagagcccgcacatcatgaggagggggccaaaactc
tggtccacctccacagatgcacaggtcaatggcagccccccaccaccatctcctgcctca
gtccccagtccccagcaggaaccctctaaaccaagtctactggctcagttcctccagaac
agaaaagaacaggttaaacatttcttggcaaagcgggtgctgataatgtatttgtttaac
aagcttccggaggcctccagtcaggctctcttcgctgacagccaggctcacatctgggct
ttagaaggtctgtcttatctggttcaagcctccttctcagaggaccagtttggggttgta
cagaccacgttacccagcattctcggctgcatgctggtcctgcaagaggctgtagaccgt
cacttcaagcttcctcacgcctccagtaaacccctcaggtcgagcagcagcatgggagac
tccaattacaaaacactgcgctttgctctcagggccacactcaagacgtccatctacagg
ataacaaccacgtttggagaccacttaaatgctgttcagatgtcggctgagcaccggaaa
agactgcagcagtttctggagtacaaagaataa
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