Hippoglossus stenolepis (Pacific halibut): 118124360
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Entry
118124360 CDS
T08308
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118124360
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118124360
09142 Cell motility
04820 Cytoskeleton in muscle cells
118124360
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hsp00535
]
118124360
Proteoglycans [BR:
hsp00535
]
Extracellular matrix (ECM) proteoglycans
Others
118124360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
118124360
NCBI-ProteinID:
XP_035037925
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All DBs
Position
17:18212431..18232375
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AA seq
932 aa
AA seq
DB search
MAACPTFCVALLSLLLAPALGQLDLNRLDGDTVCPPMRGGQDDLPGFDLITQFQLDVITL
KGVRKVDGSTPLQVAYRLDREANFQIPTMLNFPRGFPDEYSFMVTFRMIKNTVNKVWNVW
QIVDEDGNKQAGMRLNGDQQALEYFLMGADGYLQTVTFPGLSVLFNTKWHKVMIGVERDQ
VTLYVDCQPVDQKPIKGKGPVNTEGDTLIGRLDADPDASVVFELQWMLIHCDPKRAQRES
CSELPATEMYANAEPDKSVQGPPGVPGPEGPRGDPGEDGRDGRDGLPGATGSPGTSGSKG
EQGEIGLPGQRGLSGLPGVNGLSGPMGPRGSVGERGLPGFPGPAGPPGPTSKGPAGPAGK
PGIPGDEGNIGPEGPAGPRGGQGTPGPPGTPGLPGPVGPPGASNEGTGEPCPAACPAGPR
GMAGLPGLKGNKGLDGEPGKDGTPGEKGEGGASGPQGTPGRMGDDGQRGPIGFPGNAGEK
GDRGPPGFNGVPGPTGPPGAPGVEGIRGRQGLPGTKGDDGAVGGQGEQGPSGGKGEVGEP
GKDGLNGLSGSDGAKGESGTPGSVGVRGIVGIPGLPGKQGVVGPSGEKGDTGDEGPGGPV
GLPGKIGETGNDGEDGKTGDKGATGGTGKQGPVGPTGPPGIEGDKGDKGETGAKGIKGHT
GFKGDQGPMGPMGPNGSQGDTGMAGDSGVKGDQGPPGVPGIRGERGEQGQRGASGIDGRP
GQTGHEGLAGPMGARGLDGEPGHAGTPGPRGVPGPKVTDEKLREMCSAVVEEQLAEFRKE
LLQKPAALGAAGTPGPAGPAGPEGPAGAAGAAGAPGPSGPKGHPGYFGLPGIPGKKGDAG
EMGDKGDKGEDGVGVKGSSGAPGAPGAPGAPGIGTDGKNGERGESGSPGVPGTSGPRGPS
GQPGLCDPSTCISRIPPHYMVSGKKSASYKNP
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggcatgccccactttctgtgtggctctgctctccctgctcctcgctccagcactt
ggacaactcgacctcaatcggctggatggtgataccgtctgcccaccaatgagaggcgga
caagatgaccttccaggttttgatctgatcactcagttccagctggatgtgatcaccctg
aaaggcgtgcggaaggtggacggctccactcccctccaggtggcctaccgcctcgaccgg
gaggccaatttccaaattccaaccatgctaaacttccctcgtggcttcccagacgagtac
tccttcatggtgaccttccgcatgatcaagaacacagtgaacaaggtgtggaacgtctgg
caaatagtggatgaagacggcaacaaacaagccggaatgaggctgaatggcgaccagcag
gctctggagtacttcctgatgggcgccgacggctacctgcagaccgtcaccttccccggc
ctctctgtgctcttcaacaccaagtggcacaaggtgatgatcggcgtggagcgcgaccag
gtcactctgtacgtggactgccagcccgtggatcagaaacccatcaagggcaaaggtccc
gtcaacacagagggagacactcttattggcaggctggatgctgatcctgacgcctccgtt
gtgtttgagctccagtggatgttgattcactgcgacccaaagagagcccagagagagagc
tgcagtgagctgcctgccaccgagatgtatgccaatgctgagcctgacaaatcagtccaa
ggccccccaggagtccctggcccagagggcccccgaggggacccgggagaagacggcaga
gatggaagagatggtcttccaggagctactggcagtcccggcacttctggcagcaaaggg
gagcagggggagatcggtcttcccgggcagagaggcctgtctggtcttccaggagtcaat
ggtctttctggtccaatgggtcccagagggtctgtgggagagagaggtctaccaggtttt
cctggacctgccggtcctcctggcccaacaagcaaaggacctgctggacctgcaggaaaa
cccggaatcccaggagatgaaggaaatatcgggcctgagggtccagctggacccagaggg
ggacaagggaccccggggcctcctggcactcctggtctgccagggcctgtgggaccgcct
ggtgccagcaatgaggggactggggaaccttgtcctgctgcctgtcctgctggacctcgg
gggatggctggactaccagggctgaagggtaacaaaggtttggatggtgaacctggaaaa
gacggaacccctggagagaagggagaaggtggagcaagtggtcctcaggggacaccaggt
cgcatgggagatgatggtcaacgagggcccattggattccctggaaatgctggagagaag
ggagacagaggtcctcctggtttcaatggtgtcccaggacctacaggcccgcctggagct
cctggtgtggagggaatccgtggacgtcagggtttgccagggaccaagggtgatgatgga
gctgtgggagggcagggagagcagggaccttcagggggaaaaggagaagttggagagcct
ggcaaagatggcttaaatggactctctggatctgatggcgctaagggagagtctggaacc
cctggatctgttggtgtcagggggattgtgggtattcccggactgccagggaagcaggga
gtagtcggaccctctggtgaaaagggtgatactggtgatgagggacccggcggaccagtt
ggacttcctggaaagattggtgagactggcaatgatggagaagatggaaaaacaggagat
aaaggagcaactggtggaacaggaaaacaagggccagtggggcctacaggtcctccggga
atcgagggagacaaaggagataaaggtgagactggtgccaagggaataaagggtcatact
ggattcaaaggagatcagggaccaatgggacctatgggaccaaatggaagtcagggtgac
acagggatggcaggagattccggggtgaagggagaccagggccctcctggtgttcctgga
atcagaggagagcgtggagagcaaggccagagaggagcatcagggatcgatggccgacca
ggtcagacgggccacgagggtttggctggtccaatgggagccagagggctggacggagaa
ccaggccatgctggaacaccaggtcccagaggtgtacctggcccaaaggtgaccgacgag
aagcttcgggaaatgtgctcagccgttgtagaagaacaattggcagagtttaggaaagag
cttctgcagaagccagcagcccttggagccgctggtacccctggaccagcaggacctgct
ggccccgaaggaccagccggagcagcaggagcagcaggagctccaggaccctcgggtcct
aaaggtcatccaggctactttggacttccaggcataccaggcaagaaaggtgatgctgga
gaaatgggagacaagggagacaagggagaggatggagtaggagtcaaaggcagctcaggt
gcacccggtgcaccaggtgcaccaggtgcccccggcattggcacagatggcaaaaatggc
gaacgtggtgagagtgggagtcccggtgtcccaggaacatctggtccaaggggaccctca
ggacagcccggcctttgtgacccatcaacctgtataagccgaattccacctcactatatg
gtcagtggcaagaaatctgccagctacaaaaacccgtga
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