Heyndrickxia sporothermodurans: JGZ69_08240
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Entry
JGZ69_08240 CDS
T10218
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hspo Heyndrickxia sporothermodurans
Pathway
hspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JGZ69_08240 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hspo03021
]
JGZ69_08240 (rpoB)
03400 DNA repair and recombination proteins [BR:
hspo03400
]
JGZ69_08240 (rpoB)
Enzymes [BR:
hspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JGZ69_08240 (rpoB)
Transcription machinery [BR:
hspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JGZ69_08240 (rpoB)
DNA repair and recombination proteins [BR:
hspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JGZ69_08240 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QQX26762
UniProt:
A0A150LFJ1
LinkDB
All DBs
Position
1595982..1599539
Genome browser
AA seq
1185 aa
AA seq
DB search
MTGQLVQYGRHRQRRSFARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFAG
NLSLEFIDYSLGEPKYSVEECKERDVTYSASLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYFNGKMDKNGKQGFGATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLLGDNEYIRNTLEKDNTESTEKALLEIYERL
RPGEPPTVENAKSLLISRFFDPKRYDLANVGRYKINKKLHLKNRLFGQRLAETLADPETG
EIIAEEGTTLDRRTLDKILPNLENGTGFKVYPQVGGVVEDDIVLQSIKIYAPIDDGEKVI
NVIGNANVDASVKNITPADIISSISYFFNLLHGVGITDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDINTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNPYG
FIETPYRRVDPETGKLTDQIDYLTADEEDNYVVAQANSRIAEDGSFADEEVIARFRGENT
AFKRDRIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPIVGTG
MEHVSAKDSGAAVICKHDGIVEHVEAREIWVRQVKNIDGQEVKGDLNKYRLQKFIRSNQG
TCYNQRPIVSVGDRVVKGEVLGDGPSMEKAELALGRNVLVAFMTWDGYNYEDAIIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEMTRDIPNVGEDALRNLDERGIIRVGAEVKDGDL
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGEGIVLDVKVFNREDGDEL
PPGVNQLVRVYIVQKRKIHQGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAARYLGIHVATPVFDGATEEDVWETIEEAGMANDAKTILYDGR
TGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMD
VKILSSDDQEIEMRDLEDEDDVNQADTLNIAPESREESEIVASKE
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaacttgttcagtatggacgacaccgccaacgcagaagttttgcgcgtatt
agcgaagttctagaattaccaaatcttattgaaattcaaacctcttcgtatcaatggttt
cttgatgagggtttgagagaaatgttccaagacatttcgcctattgaagatttcgctgga
aatctatctttagaatttattgattatagtctcggcgaaccaaaatactctgtggaagag
tgtaaagaacgtgatgttacgtattctgcatctcttcgtgtaaaagttcgtcttgtaaat
aaagagactggtgaagtgaaagatcaagatgtatttatgggtgatttcccattaatgaca
gaaacaggtacgtttatcattaatggtgcagaacgagttattgtatcacagcttgttcga
tcaccgagtgtgtattttaacggaaaaatggataaaaacggaaagcaaggttttggtgcg
actgttattccaaaccgtggtgcttggctcgaatacgaaacagatgcaaaagatgtagtt
tatgtacgtattgatcgtacaagaaaattacctgtaactgttcttttgcgtgctctcggg
ttcggctctgatcaagaaatcatcgatctattaggagacaacgagtacattcgtaatact
cttgaaaaagataatacggagagtacggaaaaggcgttgttagaaatctatgaacgttta
cgcccaggtgaacctcctacagtagaaaatgcaaaaagtttattaatatcacgtttcttt
gatccaaaacgctatgatttagcaaatgttggacgctataaaattaataaaaagctacat
ttaaaaaatcgtcttttcggtcagagattagcagaaacgctagcggatcctgaaacaggt
gaaattatcgcagaagagggaactactcttgaccgccgtacattagataaaatcttacct
aatttggaaaatggaactggttttaaagtctacccacaagttggtggtgtggtagaagat
gatatcgttcttcaatccataaaaatttatgctccgattgacgatggagaaaaggtaata
aatgtaataggtaatgctaacgtagatgcaagtgtaaaaaacattacacctgcagatatt
atttcttccattagttatttctttaatttactacacggggttggtattactgatgatatt
gaccatttaggaaaccgtcgactacgctctgttggcgaattgttgcaaaatcaattccgt
atcggattatcgcgtatggaaagagttgttcgtgaaagaatgtccatccaagacataaac
acgataacaccacagcaattaattaacattcgcccagtcattgctgctattaaagaattc
tttggtagctcgcagctttcacagtttatggaccaaaccaatccgctagcagaattaacg
cataaacgaagactttctgcattaggacctggtggtttaactcgtgaacgtgcaggaatg
gaagtacgtgacgttcactattcgcattatggtcgtatgtgtccgattgaaacgccagag
ggtccaaacattgggttgattaactcactttcgtcatatgcgaaagtaaatccatatgga
tttattgaaacaccttatcgccgcgttgatcctgaaactggtaagttaacagatcagatt
gattatttgactgcggatgaagaagataattatgttgtagcacaggcaaattccagaatt
gctgaagatggttcttttgccgatgaagaagttattgctcgttttagaggtgaaaatact
gcgtttaagcgtgaccgcatcgactatatggatgtatcacctaagcaagtagtttctgcc
gcaactgcatgtattcctttcttagaaaatgacgattcaaaccgtgcattaatgggagcg
aacatgcaacgtcaagcagtacctctaatgcagccggaagctccaattgttggaacaggt
atggaacatgtttcagctaaagactccggagcagcggtaatttgtaaacatgatggaatt
gttgagcatgttgaagcgcgagaaatttgggtgcgtcaagttaaaaacattgatggccaa
gaagttaaaggtgatttaaataaatatcgcctacaaaaatttattcgttcaaaccaagga
acatgctacaatcaacgtccaattgtaagtgttggtgatcgtgttgtaaaaggtgaagta
cttggtgatgggccttccatggagaaagcagaactagcgctaggtcgaaatgtactagta
gcatttatgacttgggatggctataactatgaagatgccattatcatgagcgaaagactt
gttaaagatgatgtttacacatctatccatatagaagaatatgaatcggaagcccgagat
acaaaactagggccagaagaaatgacacgtgatatcccgaatgttggggaagatgctcta
cgtaacttagatgagcgtggaataatccgtgttggtgcagaagtaaaagacggagatttg
cttgtcggtaaagtaacgccaaaaggtgtgacagaacttacagctgaagaacgtttattg
catgcaatctttggtgaaaaagcgcgtgaagtccgtgatacttcactacgagtaccgcat
ggcggtgaaggaattgtcttagatgttaaagtctttaaccgtgaagatggagatgaactt
ccgccgggggttaatcaactcgtacgtgtatacattgtacaaaaacgtaaaattcaccaa
ggggataaaatggcgggacgccacggtaacaaaggggtaatttcccgtattctccctgaa
gaagatatgccattcttacctgatggtacaccggtagatattatgttaaatccactaggg
gttccttctcgtatgaatatcggtcaggttcttgaattacatttaggtatggcagcaagg
tatcttggtatacatgtagcaacaccagtttttgacggtgcaacagaagaagatgtttgg
gaaacaattgaagaagccggtatggcgaacgatgcgaaaacaatcctctatgatggtcgt
acaggggaaccgtttgataatcgtgtatcagttggtatcatgtatatgattaaattggca
cacatggtagacgacaagctccatgctcgttcaacaggaccatactcacttgtaactcaa
cagccgctcggtggtaaagcacaattcggtggacaacgttttggtgagatggaggtatgg
gcacttgaagcatatggtgctgcatatacactacaagaaatcctaacagttaagtctgat
gacgttgtaggacgtgtgaaaacttatgaggctattgtaaaaggtgaaaatgttcctgaa
ccgggtgttcctgaatcatttaaagtattgattaaggaattacaaagtttaggtatggat
gtcaagattctatctagcgatgatcaagaaattgaaatgcgagacttagaagatgaagat
gatgtaaatcaagctgacactttaaacatcgcacctgagtctagagaagaatcagaaatt
gttgcctcgaaggaataa
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