Hydractinia symbiolongicarpus: 130614228
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Entry
130614228 CDS
T09218
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130614228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130614228
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130614228
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130614228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130614228
NCBI-ProteinID:
XP_057291634
LinkDB
All DBs
Position
11:complement(21982076..22017682)
Genome browser
AA seq
2444 aa
AA seq
DB search
MTTGGCLDGLSLALSQISFTVTELSKKNYKNNVLELKAIVQKYGPEAERHLFRCLLSYLD
FSSDNSVNREILQVQLFLEGCQELVTKPNFASILCYSLENPEVFQKSVKPTLQFLYLFSK
SLKLSKVQEIVFGIGLQSSFIPDFRSAAQTFVKQKLPELLRSYIDSELSGSVIQESVGLG
DVAIEVLHLLLSYLLNPVQEEKIVPEEQLQSFLNSLRKDFPRERVPAVLAPLLYPIKQLQ
EEQIVLNHEVGSIVKFMMEGNMCEIIEELGYTCMTTKDDCRETLLNFGIAALNATNVAKV
IALMARTLSGLEGSGGLQNFSNNRMSSLDNPPQSWNVDVFVEVIKELAPALNWNQVIQEL
DHPEFIIKDPKGLQLIMFAYFKATSSSNFPIQYVYKPWKNALGQLSWVECALYNPEVFSF
CDFPCHPVVLDILKSSPDETNREIRTWKSLDLVELLLSLSETSNYESVLKLFAWPVKNCP
DVLILALLQVQSTWRTLRNDLVSMLMPLFLMNHPNSMSVLHYAWHGQGQSPTIRQLVIQS
MADWYVKADKMGDQVEQQTRLSRILDVAQDLKALSMLLNSSPFSFVIDLAALASRREYLK
LDKWLTDKLREHQEPFGQALVGFLKRRCPQLFGVLDKDLPKAVQLPNETITTTLSCLQGH
IGAFGKEINEAVQMMLNSPFMKTRPGNPLIMPPKRSDGSTAFPTSSLSGLSSSPIGSQPD
PFSSSVFGLSSAAFNSSVNTSQLPGFGGGGLSGFGTGSSFNGLGGLASMQGSKAGPIGNL
LASSSGAAGTIGGGIGSTSLTQNPLIPQYNSTQGLGSSSLSGTGLGSMSDAFSARRNNPL
TNLGGSSFSAFNQPSSATLAAQNRQADRLKQAAAAGDISAVVPGMDQNFSKEVDDEANSY
FQKIYNSPPNPTMSIEEVLEMLRRFKDSNDKKERDVFLCMLRNLFEEYRFFPQYPEKELH
ITACLFGGIIEQGLVTYMALGIALRYVLEALRKPPSSKMYMFGTTALDRFKARLKDYPHY
CQHLASIPHYKEFPSHLVEYIGFGQRNQEPPSSVISRSNMTNSPSLIGSISSVGRMPGVN
TPTDSVTPPPLAQGPIPVTTAKSTATTNTVSVTSSSATTSTATSSSTKKELSIATTNIDT
LLDATEGEMSQPNEGIQDKVHFIFNNISATNLEVKAADLKQAIQTDFNPWLAQYLVMKRV
SIEPNFHHLYSDFLKAVAIPELSKLVLDETYRNIKVLLRSDKGPANFSDRSLLKNLGHWL
GIQTLGNNKPILYKDLEVKSLIIEGFFKGQQELLYVVPFVAKILEACAKSRVFKPPNPWL
MATMSVMAELHQLPDLKLNLKFEVEVLCNTLTLDLKSIQPADLLKDQDILNKIEHQLTPP
EKDKGGSNAEQQLAMGPPVPMFSYHDITIGALQWLAPHIQVNPNIPLLLQYPHLKQSIRP
AIERSVQELLFPVVERSIKLCLTTAEMIVKKDFALDPEETRLRTAAHHMIRNVTAGMSMI
TCREPLLASLTNNIKSNLLATLRNANAQQKEQLEQVAQTIANDNLELCCVFIQKTAVERA
LHETDKRLATEYELRKHARSENRRYCDPFVLTYQAERMPEQIRLKVGGVTAAQMTVYEEF
ARSIPGFVAPQPGQLIEPFPKPIPESQPTLLPQSDVHVNDTHKSYMPDDVVHILGKCAAE
IEQHIHHMEQQVQQMMLNPAAQHLAQLHNLLDMVVNARVTRDNLSSLRLIRKAVEGVLET
VLPNDTEMALRYKDCHLIVLRGFQDPRGYGPLWTARQVLKVLADLPPEVRFNFEGIDILC
RAHLLTMREFDLMLSQWMDHGHCIPALQLAVQLCRLYLIDEKHRTIVTEVEFSNTLETLA
RVYQNRQNPEGLAALLEGIHANQSTPATSTATASGSLFGRAASGTHSSFTHDFDDVSGLH
EKVEYLLREWVRLYHHQSAGRYSEKAFQAFVPQLHQYGILKTDDLITRFFKYCTEICVDI
TYRALQDYAQSPTMARTKCFPTIDAYCRLIALLVKHSGDNTNSVTKINLLNRVLGIIGSV
IVKDHEYRQHEFHQLAYHRMFVMLLLELNAPEPVLEAINFQILSCFANVFHDLRPFRAPG
FAYAWLELIAHRTLMSKLLLNSPQQKGWVLYHQLLIDLFQFLAPFLRNVELAKQTYLLYK
GTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVD
LLNDIAHPPRILTNFGQAIQPATFKRDLDSYLKTRAPVTFLSELRSHLQTVNEPGTRYNV
PLMNALVLYVGTQAIAYIQSKSGAPSISTITHSSHMDIFQNLAVDLDTEGRYLYLNAIAN
QLRYPNSHTHYFSCTLLYLFAEANSEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
HNYKFWNHDFVHCAPEIEKLFESVARSCMQQKQPSSGNGSESGD
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaggaggttgtttggatggtttgtcacttgctttgtcacaaatcagttttaca
gttacagaattatcaaagaaaaactataaaaataatgttttagaacttaaggctattgtc
cagaagtacggtccagaagctgaaagacatttattccgttgtcttttgtcttatcttgat
tttagtagtgataacagtgtcaatcgagaaatactacaggttcagctatttttagaaggc
tgtcaagaattagttactaagccaaattttgcttcaatactctgttattcgcttgagaat
cctgaggtttttcaaaagtccgtcaaaccgactttacagtttctctacctatttagtaaa
agtttaaaactatcaaaagttcaggagattgtttttggtattggcttacaaagctcattt
attccagatttcagatcagctgctcagacattcgtgaagcagaaattacctgaactttta
agatcatatattgactcagaactaagtggttcagttatacaagagtcagttggacttggt
gacgttgcaatagaggttttgcatttgttgctgtcgtatttattaaatcctgtgcaagaa
gaaaaaattgtaccagaagaacaattacaatcgtttttgaactctttgcgtaaagacttt
cctagggagcgtgtgcctgccgttcttgcacctttactttacccgataaaacaactacag
gaggaacaaatcgtgttgaaccacgaagttggctctatcgtaaaattcatgatggagggt
aacatgtgtgaaattatagaagagttgggttatacatgtatgactacaaaagatgattgc
agggaaactcttttaaactttggtattgcggccctaaatgcaacaaatgtagccaaagtt
atagctttaatggcaaggacattatctgggcttgaaggaagtggggggttgcaaaatttt
agcaacaatcgaatgagcagtctggacaacccaccacaatcgtggaatgttgacgtattt
gtagaagtcattaaagagctggcccctgcgttaaactggaaccaagttattcaagaactt
gatcatcctgaatttattatcaaggatcctaaaggattgcagttaattatgtttgcctac
tttaaagcaacttcaagctctaactttccaatccagtatgtttataagccatggaagaat
gcccttggacagctttcctgggttgaatgtgcactatacaatcctgaagtgttttccttc
tgtgattttccatgccacccagttgtattagacattttaaagtcatcaccagacgaaaca
aaccgagaaattcgcacatggaaatcacttgatttggtagagcttttgcttagtttgtcc
gaaacaagcaactacgaaagtgtgctgaagctattcgcttggcccgtaaagaattgtcca
gatgttttgatccttgctttacttcaagtgcagtcaacatggcgtactctacgcaatgat
ctggtttcgatgctgatgccgctgtttttgatgaatcatccaaactcgatgagtgttctg
cattatgcctggcatggacaaggccaatctcccaccattagacagcttgtaatacaaagt
atggctgattggtatgtcaaagcagacaaaatgggtgatcaagtagagcagcagactaga
ttgtcacgcatattggatgttgctcaagacttaaaggctttgtctatgcttttaaattct
tcaccattttcgtttgtgattgacttagcagctcttgcatcaagaagagaatatttaaaa
ttagacaaatggttaactgataaacttcgtgaacatcaggagccattcggtcaagctctt
gttggttttctgaagcgtagatgtccacagttatttggtgttcttgataaagacttaccg
aaggctgttcaacttccaaacgaaacaattacaacaacactatcatgtttacaaggacat
attggtgcttttggaaaagaaattaatgaggctgtccaaatgatgttaaacagtcctttc
atgaaaaccagacctgggaatcccctgataatgccaccaaaacgatctgatggctctaca
gcatttccaacatcatcattaagtgggttgagttcttcaccaatcggtagtcagcctgat
ccattttcatcatctgtatttggtctgtcatcagcagcattcaattccagtgtaaatact
tcacaacttcctggtttcggtggtggtggtttaagtggatttggaactggatcttctttt
aatggcttaggtggattggcgtctatgcaaggatcaaaagctggacctattggtaacttg
ttagccagctcatcaggtgcagcagggactattggtggtggtataggaagcacatcttta
acgcagaacccacttattccacaatataattcaacgcaaggtctaggttccagcagctta
tcaggtactggtttaggcagtatgtctgatgcattttcagcacgaagaaataatcctttg
acaaatcttggtggaagcagtttctctgcttttaaccaaccatcatctgctacgctggct
gcccagaacagacaagcggatcgtttaaagcaagctgctgctgctggcgacatctctgca
gttgtacctggaatggaccaaaacttttccaaggaagtggatgatgaagcaaacagctat
ttccaaaagatatacaactcaccgcccaacccaacaatgtcaattgaagaggtacttgag
atgctaagaaggtttaaagactctaacgacaagaaagaaagagatgtgtttttgtgcatg
ctaagaaacctctttgaggaataccgattttttccacaatacccagagaaagaacttcat
atcacagcatgtttatttggtgggataattgagcaaggcctagtaacctacatggctctt
ggaattgcactaagatatgtgttggaggctttgcgaaagccaccttcttctaaaatgtac
atgtttggaacaacagcacttgatagatttaaagccaggttgaaagattatcctcattat
tgtcaacatttggcatcaattcctcactataaagaattcccgtctcatctggtagaatat
attggctttggacaaaggaaccaggaacctccaagttctgtcattagtcgaagtaatatg
accaactcgccaagtctaattggaagcatttcttcagtgggaagaatgccaggtgtaaac
acaccaacagattctgtaacacctccacctcttgcacaagggccaattcctgtcaccact
gcaaagtcaaccgccactactaacacagtatcagttacatcttcctcggcaacaacatcg
actgcaacatcctcttcaactaaaaaagagctttcgattgccacaacaaacatagacaca
ttgctagatgctacagagggagagatgagccaacctaatgaagggatacaagataaagtt
cacttcatttttaacaacatttctgctacaaatttagaagtaaaggcagcagacctgaaa
caggctatacagaccgattttaatccttggttagcacaataccttgtcatgaaacgagtg
agcatcgaacctaactttcatcacctgtactcagattttttaaaagctgttgcaattcca
gaacttagcaaacttgttttagatgaaacatatagaaatattaaggtgttgcttcgctca
gataaaggacctgcaaacttttctgacagatctttgttaaaaaatctaggccattggctt
ggaattcaaacactgggaaacaacaaaccaattctttataaagacctggaagttaagtct
ttgataattgaaggatttttcaagggacagcaggagttgctctatgtagttccatttgtt
gcaaaaattttggaagcttgtgcaaaaagtcgggtatttaaaccaccaaatccatggctt
atggcgacgatgtctgtaatggctgagctacatcaacttcccgatttaaaactaaatctg
aaatttgaagtggaagtgctttgcaacacgttaacattagatttgaagtccatccaacca
gctgatttactcaaagatcaagatatcttaaataagattgaacaccagttgactcctcct
gaaaaagataaaggtggcagtaatgcagagcaacagttagcaatgggaccacctgtgccc
atgttctcgtatcatgacattaccattggtgctctacaatggcttgcacctcacatacaa
gtcaatccaaatatccctctattgctgcaatatcctcacttgaaacagagcattcggcct
gccattgaaagaagtgtgcaagagttgctgtttccagttgtagaaagatctattaaatta
tgtcttaccacagctgaaatgattgtgaaaaaggattttgcactggacccagaagagacg
cggttaagaacagcagctcatcacatgattcgcaacgtcacagctggcatgtcaatgata
acatgtcgagaacctttgctggctagtctgacaaataacatcaaaagcaatttgttggcg
acactaaggaatgctaatgcgcaacagaaagaacaattggaacaagtagcccaaaccatt
gctaacgacaatttggaattgtgttgtgtctttattcaaaagacggctgttgaacgagct
ttgcatgagactgataagcgtttggcaactgaatacgaactgcgaaagcatgcccgtagt
gaaaacagacgatactgcgatccattcgtattgacttatcaagcagaaagaatgccagag
caaatccgcttaaaggttggaggtgtgactgcagcacagatgaccgtgtatgaggagttt
gctcgctccatacctggatttgttgctccacaacctggccaattaattgaaccgtttccc
aaacccataccagaatctcaacccacgctacttcctcaatctgacgttcatgttaatgat
actcacaagtcttacatgccggacgatgttgtacacattctgggaaaatgcgctgctgaa
atagaacagcatatccaccacatggaacagcaagttcaacaaatgatgctcaaccccgct
gctcagcatttggcacaactccataacttgctggacatggttgtcaatgctcgtgtgacc
agagataacctctcttcgttgaggctgataagaaaggcagttgaaggcgttctcgaaaca
gtgctgcccaacgacaccgaaatggcgttgcgatacaaagattgtcacctaatagtactg
cgaggattccaagatcctcgtggatatggacctctctggacagctcgacaggtcttaaaa
gtccttgctgacttgcctcctgaagttcgttttaattttgaaggaattgacattttatgc
agagcacatttgctaacaatgagagagttcgatctgatgttatcacagtggatggatcat
ggccattgcattccagcattacaacttgctgttcagttatgtcgcttatacttgatcgat
gagaaacatagaactatagtgactgaggtcgagttcagcaacactctcgagacattagca
cgtgtgtatcaaaacagacaaaaccctgaaggacttgcggcgttactagaaggtatacac
gctaaccagtcaactcctgccacatcaactgcaaccgctagtggcagtttatttggaaga
gcggccagtggcacacacagcagtttcacacacgattttgatgacgtttcaggattgcac
gaaaaggttgaatatcttttacgtgaatgggtaaggctataccatcaccaaagtgctgga
aggtacagcgaaaaagcttttcaggcttttgttccacagcttcatcagtatggtatcctg
aaaacagacgacctcattacccggttcttcaagtattgcacagagatatgtgtggatatc
acgtacagagcattgcaagattatgcgcaaagcccaacaatggcgagaacaaaatgtttc
ccaacaattgacgcatactgccgcctaatcgctttattggtgaagcattctggagataac
acaaatagtgtcaccaagattaatctccttaatagggtacttggaattatcggctccgtc
attgtgaaagatcacgaatatcgtcaacacgaattccatcagcttgcataccaccgaatg
ttcgtgatgctgctacttgaactcaacgcaccagagcctgtattagaagctattaatttc
cagattttgtcgtgttttgctaatgttttccacgacttgcggccgtttagagcgcccggt
tttgcgtacgcgtggttggagctgatcgcacatagaacattgatgtcgaagttgctgtta
aattcgccccaacaaaagggctgggttttatatcaccagttattgattgatttgtttcaa
tttctcgctccgtttttacgcaatgtggaactggcaaagcagacttatcttctatacaag
ggcactcttcgtgttttgcttgtgctgctccacgacttcccagagttcttatgcgattat
cacttcagtttttgtgatgtgataccgcccaactgcatacaaatgcgaaatctaatattg
agcgccttcccaagaaatatgagattgcccgatccatttacaccaaatctgaaggttgat
cttttgaatgacattgcgcatccaccgcgaattttaactaactttggtcaagcaatccag
ccagcaacgttcaagcgagatttagattcgtacttgaaaacccgagctccagttacattc
ttgtctgaactaagaagtcatctccagacggtgaatgaacctggaactaggtacaatgta
ccgctaatgaatgcattggtattgtacgttggtacgcaagcgatcgcttacattcaaagc
aaaagtggagctccgtcaatatctaccattacccactcttcacatatggatatatttcaa
aatttagctgtggatttagacaccgaaggtcgttacttgtacctaaacgccatagccaat
caactgcgctatccgaacagtcacacgcactatttcagttgcacgttgttgtatttgttt
gcagaagccaactcggaagctatacaagaacaaataacaagagtattgttggaacgttta
attgtcaaccgaccacacccatggggacttttgatcacgtttattgaactgatcaagaat
cacaactacaagttttggaatcatgactttgttcactgtgctccagagatcgaaaagttg
ttcgaatctgtcgctcgaagttgtatgcaacaaaaacaaccctcttcagggaatggaagt
gaatcaggagattaa
DBGET
integrated database retrieval system
