Hydractinia symbiolongicarpus: 130647742
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Entry
130647742 CDS
T09218
Name
(RefSeq) SKI3 subunit of superkiller complex protein-like
KO
K12600
superkiller protein 3
Organism
hsy
Hydractinia symbiolongicarpus
Pathway
hsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130647742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsy03019
]
130647742
Messenger RNA biogenesis [BR:
hsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130647742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_16
TPR_12
TPR_17
TPR_14
TPR_8
TPR_11
TPR_CcmH_CycH
ANAPC3
ARM_TT21_C
DUF7017
TPR_6
HAT_PRP39_N
ARM_TT21_5th
TPR_30
Motif
Other DBs
NCBI-GeneID:
130647742
NCBI-ProteinID:
XP_057309685
LinkDB
All DBs
Position
1:complement(24117308..24138836)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSEVKAELKLAKDFIKKKDYKEAYKHCKNVLKTDKENYNALVFFGVCATELNHYEQAKKA
YEKAIEKNKDDILAWQGLCSLLERMKNDTYNGELIKTYKTLLEKYPSDNGKYIDTSKKLL
AILRQEKKLSEVVEYQKKVILKYSCGSDIVEAWNTIISTLTTMLESQEDMEEKARIVFEL
FKAYNCLIAETDKWSIKAEEEHEKFIKFLLKFNQIKHSELPSLTEILSLLTKFHHKYESN
AEILKNLCTALVNHYFVTDILTDESRQYFEKYLQMDTDNDLNSIIKGVTEYSKSCYQTAL
QFFSNDSKNPVIMYFRGRCHYQMHCHREVQSVINQCRVNTEQTVFQETRNLLERKLIVLE
LQVLLAAEKIDAEKVVMMMKKMNLDENKIDDLLLRMEAHLSLGQFDSFREDLAKNEVLEE
KMTLAQKLKHLQLKAEASFVEKKFFDAEIRLQETFRIMDNSRSHFLLGKVYWYLGESEND
YYKMAYTEFLKAAKMDPLYSQTFVFLGLYQKSLIKDTTKALKCFEKAISLDSSNSEAGRN
IGDIYLQLDQEEKALQVYLGIVSKSEVGEAGWAWMRLGLIYLKQENADQAIVCFQRALRG
KADISHYWECLGDAYFMKGSYTSSMKAFTKSLQLDSSSMYCKHKIGQIRQMLCLAVEAIE
AYTDLLKEHPNYVPALLGLAQCYHHLQKESLKMTFDGRAVSQAQQVVNHLTRAIEREPRY
TCLWKTLADSLTSLYIANGDKCRLSIPAALQKFVSFQVEGVADKPAIMEIASRCFMMAVK
LREDIACFWHDLAVCTYRYGKILQGEAGREKILHSIQIVKKAIQLDCSNHTFWNSFGVMT
GCSISSQCCGHSIDDIQNPGLSQHAFIKALEINPQDALVWANLGVLYLKHDQVKAAHEAF
KKAQACDPLLVQGWVGQAYIAESIGDEDAMDLFRHSTDLDFHGESSLAYAQWVCSLLHVN
KKESILLSTKPRPDLSHLPTRSRKMVRNASVALQKLTERCKVDPWLYNTLGNLLEHEALY
KKAEKAFECARKLLTESSVDTEQTEILRKVLLNQARVLCELKKFESAIEIYNMSCPQTSN
EICGLALAYFGSGNLKKSQEAYEKALSLSTVDSESSSILAALGMVSYALRNSDAAKALLF
QSSQMKPCSEHGLMALSSLGLMSGDGTLATAALMELAKHPLRDTESYDVKRTKLMTCFHL
LQGQTKAAQRTINKAIMRYPNNSTLWSDLANFFLQHVPSNMKGALHCMAVTRCMGPSQIV
SKRQATVSLGFPVSTPRDAIRAAQRLVHSQPEDAKSWVLLSTALLTSSILEKDQQQAEHS
VVRFTHLALEKVDQQLNVLKKQCQAFAPKDKICLTTYSRLYSWMMKSFVLTSIYYGDVTA
AHSFCDKIIMSLNGDKTQEDFLFLKGLAKNQLQHPNFERESSHENLPFMATVASRSSAPW
IWRILAQLYERMSMPEHAERCYREIIKQRIQNGELVFPALFKLCMLCIKSYSVSKADVWL
KHASDTMSELVKLKEDSDVLTLLRAVLFYQQGNKKAALKYVGKLTFVSCRELLTIQEKLL
QAWK
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagtaaaagcagagttaaaattagcaaaagattttattaaaaagaaggactac
aaggaagcatataaacactgtaaaaatgtacttaaaaccgacaaagagaactataacgca
ttggtgttttttggcgtgtgtgcaacggaactgaatcactatgagcaggcgaaaaaagct
tacgagaaagccattgaaaaaaacaaggatgacattttagcatggcaaggcttgtgttca
ctattggagcgaatgaaaaatgacacatacaatggagagctgataaaaacttacaaaact
ctattggagaaatatccaagcgacaacggaaaatatattgacacttctaaaaagcttctg
gctattttacgacaggagaagaaactttctgaggttgtggagtaccagaagaaagtaatt
ctgaaatattcttgtggaagtgatattgttgaagcatggaacacaataatatcaacatta
acaacaatgttggaaagtcaagaggacatggaagaaaaagccagaattgttttcgagctc
ttcaaagcgtacaactgtttgatagccgaaactgacaaatggtcaattaaagctgaagaa
gagcatgagaagtttattaagtttttactgaaatttaatcaaataaagcattcagaacta
ccaagcttgactgaaattctttcactgctaacaaaatttcatcacaagtatgagagcaat
gctgaaattttaaaaaacttatgtacagctttggtaaaccattattttgtgacagatatt
ttgacagatgaatcaagacaatattttgaaaaatatttacaaatggacactgacaatgac
ttgaattccatcatcaagggtgttactgaatattccaaaagttgttaccaaacagcattg
caatttttctcaaacgattctaaaaatccagtcataatgtactttcgtggcagatgtcat
tatcaaatgcattgtcacagggaagtacaatctgtgatcaatcagtgccgtgtcaacaca
gaacagactgtatttcaagaaacacgcaacctactggaaagaaagctaatagtcttagag
ttacaggtcttgttggcagcagaaaaaatagacgcagaaaaagttgttatgatgatgaaa
aagatgaatcttgatgaaaacaaaatagatgatttgttgttgagaatggaagcacatttg
agccttggtcaatttgacagttttagagaggatttagcaaagaatgaagttctagaagaa
aaaatgacattggcgcagaagttaaagcatcttcaactgaaggcagaagctagttttgtt
gaaaagaaattttttgacgctgagataaggctacaagaaacgttcagaattatggataac
tccaggtcacattttctgctgggaaaagtgtattggtatctaggcgaatcagagaatgac
tattataaaatggcatacacagaatttctcaaggctgctaaaatggatcccctgtactca
caaacatttgtttttcttggattatatcagaaatcgcttattaaagatactacgaaagct
ttgaagtgtttcgaaaaggcaatctcattggattcatctaactcagaagccggacgcaat
attggtgatatctacttgcagttagatcaagaggaaaaagcattgcaagtgtatcttggt
atagtctctaagagtgaagttggcgaagctgggtgggcgtggatgagattaggactgatc
tatctgaagcaagaaaatgctgatcaagccatagtatgtttccagcgtgcattgcgaggg
aaggcagatataagtcattactgggaatgtcttggtgatgcctacttcatgaaaggcagc
tatacctcttctatgaaagcttttacgaaatcattacagttggattcaagttcgatgtac
tgcaaacacaagataggacagatccgacaaatgttgtgtcttgctgttgaagctatcgaa
gcctataccgatctcctaaaggaacatcctaattatgtacccgctcttttaggtctggca
cagtgttatcaccatttgcagaaagaaagtttaaaaatgacgttcgatggacgagctgtt
agtcaagctcagcaagtggtcaaccaccttacaagggccattgaaagagagcctcgatat
acgtgtttatggaaaacactggctgattctttgacgtctctttatattgctaatggtgac
aaatgcagactgtccattcctgcagcgcttcaaaagtttgtgtcatttcaagtggaaggg
gttgcggacaagccagcaatcatggaaattgcgtcaaggtgtttcatgatggcggtgaag
ctacgagaagacattgcatgtttttggcacgacctagctgtgtgcacatatagatatgga
aagatcttacaaggagaagcaggaagggaaaagattctgcacagcatacagattgttaaa
aaagctattcaattagattgtagcaatcatacattttggaatagcttcggggtgatgact
ggttgttcgatttcttcccaatgttgtggtcattcgattgatgatatacaaaacccaggg
ttgagtcaacatgcgtttattaaagctttagaaatcaacccgcaggacgctctagtttgg
gcgaatcttggagtattgtatctcaagcatgatcaagtcaaggctgcacacgaagccttt
aaaaaagcacaagcgtgtgaccctttattagttcagggttgggtcggtcaggcatatatc
gcagagagcattggtgacgaagatgctatggatttgtttcgacattcgacagatctcgac
tttcacggtgaatcaagccttgcatacgctcagtgggtttgtagccttctgcatgtcaat
aaaaaagaatctatattacttagtacaaaaccaagaccagatttgtctcatttacccaca
cgttctcgaaagatggtacgcaatgcttcggttgctctgcagaaattaactgagcgttgc
aaggtggatccatggctgtataacactctgggaaaccttttggaacacgaagctttgtat
aaaaaagcggagaaagcatttgaatgtgctcgcaaacttttaactgaaagcagtgttgat
actgaacaaacagaaattttgagaaaggtactgctaaaccaagcacgtgtgttgtgcgaa
ctaaagaaattcgaaagtgcaattgagatctacaacatgtcgtgtccacaaacatccaac
gagatttgtggtttagctctggcttatttcggttccggtaatttgaagaagtcacaagaa
gcctacgaaaaagctttatcactttcgactgtggatagcgagagctcttcaatcttggca
gcattgggtatggtatcgtatgctttaagaaattccgatgcagctaaagctttgctattc
caaagttcgcagatgaaaccgtgcagcgaacatggtttgatggctttgtcgtctcttggt
ttaatgtccggggacggtacacttgcgacagctgctttgatggagttggcaaaacatcca
cttcgtgacactgaaagttatgatgtgaagagaacaaagttaatgacgtgctttcatctg
ttgcaggggcaaacaaaagcggcacaaagaactattaataaagccatcatgagatatcca
aacaattctacactgtggagtgatttagccaactttttcttacagcatgttccaagtaac
atgaagggagcactccactgtatggctgtgacaagatgcatgggtccttcacagatagtt
tcaaaaagacaagcgacagtatctctcggtttccctgtgtccacaccacgtgacgcaata
cgagctgcacaacgattggtgcacagccaacccgaagatgcgaagagttgggttctcctt
tcgacagcattgttgacttcttctattctagagaaagatcaacaacaagcagaacattct
gtagtcaggtttacccacttggctttggaaaaagtggatcaacagctgaatgtcctgaaa
aagcaatgccaagcgtttgctccaaaagataaaatttgtcttaccacatattctcgtctc
tactcgtggatgatgaagtcttttgtgcttactagtatatattatggagatgttacagcc
gctcactccttttgtgataaaatcattatgtcacttaacggagataaaacacaagaggac
ttccttttcttgaaaggcttggcaaagaatcaactgcaacatccaaatttcgaaagagag
tcatctcatgaaaatctacctttcatggctaccgttgcctctagatcttcagctccttgg
atttggcggatccttgctcagttgtatgaacgcatgtcgatgccagaacacgctgaacgc
tgttaccgtgaaattatcaaacaacgtattcaaaatggcgaattagtctttcccgcgctt
tttaagttgtgcatgctatgcataaaatcgtactctgtatcgaaagctgatgtgtggttg
aagcatgcaagtgacacaatgtcagagttggtgaagttgaaagaagactcggatgtacta
actctccttcgcgctgttttattttatcaacaaggaaataaaaaggcagcgctgaaatat
gttggtaaattgacgtttgtctcatgtcgtgagttgttgacgatacaggagaagttattg
caagcatggaagtga
DBGET
integrated database retrieval system
