Hibiscus syriacus (Rose-of-Sharon): 120129114
Help
Entry
120129114 CDS
T09559
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120129114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120129114
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120129114
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_17
TPR_16
TPR_19
TPR_CcmH_CycH
TPR_8
TPR_9
TPR_12
TPR_6
TPR_7
TPR_15
DUF6584
BTAD
Motif
Other DBs
NCBI-GeneID:
120129114
NCBI-ProteinID:
XP_039002660
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MKTTGEQREEERRRLEELVESNPDDSSLHFQLGVCLWETRTEKEKEKEKEKEKAAEQWVI
SVKQNPKNAAAFTYLGHYYATDLVDIPRAIKCYQRALSLQPDDSDAAEALCDLLDRQGKE
TLELAICKDASHNSPRAFWAFRRLGFLQVHQKQWPEAVQSLQHAIRGYPTSPDLWEALGL
AYHRLGMFTAAIKSYSRAIELEDTRVFALIECGNIFLMLGSFRKGIEQFQQALKISPHNM
SALYGLASGLLGMSKECRNSGAFRWAASLLEDACKVAEASIQAAGNSSCTWKLHGDILLT
YAQVFPWTGESQTSEYNAEAFKKSIYSWKNTCRLAAISARNSYQQALHLAPWQANIYVDI
AISSNLISSFNEDYTLDNTWKLPEKLTLGALALEGENFEFWVALSCLSECNALRQHALIR
GLQLDVSLANAWAYLGKLYSEENKKLATQAFDSARGIDPSLPLPWAGMSVDTQTGDSTPD
DAFESCLRAVEILPLAEFQIGLAKLSLLSGNLSSSQVFAAMQQAVQRAPHYSESHNLNGL
VHEAHLNFQAAIASYRLARYAIKVSSGTVLKSHLKDVSTNLARSLIKAGNAAGAVQECED
LDKEGMLDAEGLQIYAFSLWRLGDHDSAISVTRTLAAGVSSMDRISAAVSVSFICRLLYY
ISGLDVAIGSILKMPKELFRSSKISFIVSAINALDQNNRLESIISSSRSFLASQEDITRM
HYLIALSKLIKNGTKDHIGFQSGISHLRKALHMYPNSNLIRNLLGYLLLGSEVWGNSHLS
SRCSIIDASDSKKKEGLKSGWEIFSAGAVACHAIGNSEPRFSFPTCGCQCSGSGAVQELQ
KCLRREPWNHNARYLLVLNLLQKAREERFPVNICIVLERLISVALFDEFYSGKEAPSQYQ
KFQLFLCASEILLQSGNIMGCIDQAKDASALLLPDSYQFFGHLLLCRAYAAEGNLKNSKE
EYQRCLELKTDFHVGWLCLKVMESQYQEQTLSNIFDLAFEEGSKGRNDSWNMWMAVYSLV
MGMICIWNQDFLSAEEFLGQPCSLTSAESCIFLCHGVTSMEIAKRCNDSESLSNAIRSLS
KVQQTSSVPIPIVSALLAQAEGSIGSRKKWERNLRLEWFSWPPEMRPAELFFQMHLLARR
VESESDSSSRVECCQSPLQWVLQAIHTNPSDSRYWKVLPKLL
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaacgggtgagcagagggaagaagaaagaagacgactggaggagttggtcgaa
agcaatcccgatgactcatcccttcattttcagcttggagtatgcttgtgggaaacacga
acagagaaagagaaagagaaagagaaagagaaagagaaagcggcagagcagtgggtgatt
tccgttaaacaaaaccctaaaaacgcagctgccttcacatacttgggccactactatgcc
actgatttggtcgatatcccaagggctatcaaatgttaccagcgagctctatcacttcaa
cccgatgattccgatgctgcggaagctttgtgtgatttgttggacagacaagggaaggag
accttggagcttgcaatttgcaaagatgcttctcacaactctcccagggctttctgggct
ttccgccgattgggttttctccaggttcatcaaaagcaatggcctgaagctgtacaaagt
cttcaacatgccattcgcggctatcccacttctcctgacttgtgggaagctcttggtctt
gcctaccaccgacttggcatgtttactgccgctattaagtcctattcgcgagctattgaa
ttggaggatacaagagtctttgcactgattgaatgtggaaacatctttttgatgcttggt
tcctttagaaagggaattgagcaatttcagcaagcacttaagatctcaccacataatatg
tctgcactctatggacttgcttctgggctgcttggtatgtcaaaagaatgtagaaactca
ggagcatttagatgggcagcttcattattagaggatgcatgtaaagttgcagaagcaagc
atccaagcagctggaaattcatcatgtacatggaagttacatggtgatattctgcttaca
tatgcacaagtttttccatggacgggggagagccaaacttcagaatataatgcagaagct
ttcaagaagtccatatattcatggaagaatacctgccgtttggctgctatttctgccaga
aactcatatcaacaagctttgcacttagccccatggcaggctaacatctatgtcgacatt
gcaattagttctaatctaatttcttctttcaatgaggattacacacttgataatacttgg
aagttaccagagaagttgacattgggggctttagcactagagggtgagaattttgagttc
tgggtggctttgagctgtttgtccgagtgcaatgcattgagacagcatgctttaatcagg
ggactgcagttggatgtgtctttagctaatgcttgggcatatcttggaaagctttatagc
gaagagaataagaaattggctacgcaagcatttgactctgctagaggtatagatccatca
ttgccattgccgtgggctggcatgtcagttgatactcaaactggggattcaacaccagat
gatgcttttgagagttgcctacgtgctgtggagatattgccgcttgcagagtttcaaatt
ggacttgctaaactttctttgctttcagggaacctttcatcgtcccaggtatttgcagct
atgcagcaggctgttcaacgtgcaccacattacagtgaatcccataatttaaatgggcta
gttcatgaggcacatttgaattttcaagctgccattgcttcttataggctagctcgctat
gccatcaaggtgtcttcaggcactgtcctcaagtctcatttgaaagacgtatctactaat
ttggctagatcacttataaaggcagggaatgctgctggtgctgtgcaagaatgtgaagac
ttggacaaagaaggtatgcttgatgctgaaggtttgcaaatatatgctttctcgttatgg
cgactgggtgatcatgactctgccatctctgtgactagaaccctagctgccggcgtttct
agcatggacaggatatctgcagctgtgtctgttagtttcatttgtagattgctgtactac
atttctggacttgatgtagcaattggtagcattctgaaaatgccaaaggaactctttaga
agttcaaaaataagctttattgtctctgccattaatgcgctggatcagaataataggctg
gaatccattatttcaagcagtcgttcctttcttgcatcacaagaggatatcaccagaatg
cactatctaatagcacttagcaaactaattaaaaatgggacaaaggatcacattgggttt
cagagtggaatcagtcatcttagaaaagctcttcacatgtaccctaacagtaatttaata
aggaatctacttggttatcttttgctaggcagtgaagtgtggggaaatagtcatctgtca
agtagatgttccatcatcgatgcttctgactctaagaaaaaagagggcttaaagtctggc
tgggagattttcagtgccggggcagttgcttgccatgcaatcggcaatagtgaaccgagg
ttctctttcccaacatgtggctgtcaatgctcgggttctggagctgtgcaagaactacaa
aagtgcttacgcagagagccatggaaccataatgcacgatacttgcttgttcttaatctt
ttacagaaagcacgggaagagagatttcctgtaaacatttgtattgttcttgagcgcctc
ataagtgtggctctttttgatgagttctattccggaaaagaagccccttctcaatatcaa
aagtttcagctttttttatgtgcttctgagattcttttgcaaagtgggaatataatgggc
tgtattgaccaggcaaaagatgcttcagcacttcttcttccagatagctaccagtttttt
ggacacttactattatgtcgtgcctatgctgctgaaggaaatttaaaaaattctaaagaa
gaatatcaaaggtgcttggagcttaagacagattttcatgttggttggttatgcctaaaa
gtaatggaatctcaatatcaagagcaaactctttcaaatatttttgatttagccttcgag
gaaggctcaaaagggaggaatgattcatggaatatgtggatggctgtatatagtttagtg
atgggtatgatatgtatatggaatcaggattttctttccgcagaggaatttctgggtcaa
ccttgttcgttaaccagtgctgaaagctgcattttcctttgtcatggtgtcacttctatg
gagattgctaagaggtgtaatgattcagaatctttatccaatgccataaggagtctcagt
aaagttcaacagacttcatcggtcccaatacccattgtctcagcattgttagcccaagca
gaaggaagcattggatccaggaaaaaatgggagagaaaccttcgccttgaatggttttct
tggccaccagaaatgagaccggcagaacttttctttcaaatgcatttacttgcgagacgg
gttgaatctgagtctgacagttcatccagggtggagtgctgccaaagtcccctgcaatgg
gttcttcaagccatccacacaaacccttctgactcgagatattggaaagttttgcccaag
cttctgtaa
DBGET
integrated database retrieval system
