Hibiscus syriacus (Rose-of-Sharon): 120141145
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Entry
120141145 CDS
T09559
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120141145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120141145
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120141145
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120141145
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
120141145
NCBI-ProteinID:
XP_039012008
LinkDB
All DBs
Position
Unknown
AA seq
2411 aa
AA seq
DB search
MLNLSSTLATHVRFLLQSLTEANAESVSRELCQFIEYGIEGSVLVLQTCMDCLNSHKTDS
KNLQFEQVVASTFRHAMDKPNFCTVFCQSLSMDISEDFLENFSKAMQFSISEKIGIGLAL
SDSENTDTRICGKNFCMAQVEELHSNPASFGSTEQIQNIVMFLQCSGALSKHVDSFMQML
SLVQANDAAQFVLTPILSNELREDNFLRNIDFFNESGENDFDTLLEEMEKEVSMADIIKE
LGYGCTVDAAHCKEILSLCLPLTEMTISRILGTIVFTYAGLEDNQTTFSTFSLVLGCHTS
YDLPSLSSWNIDVLINSIKQLAPDTNWIRVIENLDHEGFYIPTEAAFTFFMSVYQHACQD
PFPLHAICGSVWKNIEGHLSFLRYAVSAMPDVFTFSHSLRKLAYTDAVHGHKLPLGNENH
AWLCLDLLDVLCQLAERGHTSSVRSMLDYPLKHCSEILLLGMAHVNTTYNLLQHDVTSTV
FPMIIKNSLGAGMVLQLWNVNANLVLRGFVEVQNTEPDNMIRILEVCQELKILSSVLEMI
PFPSGIRLAVLASRNEVIDFEKWLSNNLNIYKDVFLEECLKFLKEIQFGGSQEFSAKPYR
HATDVSNLYLEACSTIIKILKANTGVISSTLLLEEIERLHVAIMNSTPKLQNGGTKESST
SDGYGDDIEAEANSYFHQMFSEQLTTDAMVQMLARFKESSVRREQVIFECMIANLFEEYR
FFPKYPERQLKIAAVLFGSVIKQQLVTHLTLGIALRGVLDALRKPTDSKMFLFGTKALEQ
FVDRLIEWPQYCNHILQISHLRATHPEIVASIERALVRISSGHLDSDGNNNPSVHHEISS
QVTPGNGELNSSSIAQPGPQLSSPLQLARHDSSHDDRHKALAASSNDVKPLLASVGQPPV
ASLTDASSNQKPQGAVSGSSMLSASPGFVRSSRGVTSTRFGSALNIETLVAAAERREKPV
EAPASEIQDKISFIINNISVANLEAKGKEFTEILKEQYYTWFAQYMVMKRASIEPNFHDL
YLKFLDKVNLKALTKEIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ
VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQNSLAYQPPNPWTMGILALLAEIY
SMPNLKMNLKFDIEVLFKNLSVDMKDITPTCLLKDRKRELEGNPDFSNKDVGASQASMVA
EKSGMVPPLSHADLSLEGASPPNSGGPTQLPSQYAGPLRLSSGALTEDEKLAALGLSDQL
PSAQGLFQATPSQSPFSVSQLSASIPNIGTHIIINQKLSSLGLHLPFQRVVPMSMDRAIK
EIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLR
GSISSHLRSSLQGLSIGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIATQL
ALRRKHRDPTFFDPNMYGQGSVGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSGQSS
HAISASPSSLSGDAGLTATFGSTSGQVTPGYTSVPGNLGQLDVASEAIETTSGALLSASS
IHIGTVAALTQQTTENDPLDASFPSTTGSPELHSVDTTDAVKELGPTSQPVPLSAATERL
GNSISEASLSTRDAMDKYQIVALKLESLVATDGREADIQGLISEVPEIILRCISRDEAAL
AVAQKVFKGLYENASNSLHVSAHLSILSAVRDVCKLAVKELTSWVIYSDEERKFNKEITV
GLIRSELLNLAEYNVHMAKLIDGGRNKAAMEFAISLLQTLVTDESRVISEFHNLVDALAK
VASRPGYPESLQHLIEMVRNPSSSMAVLSTASDGKEDKARQSRDKKAPGLAPANREDNSN
IEALEPDPAGFKEQVSMLFAEWCQIYEHPGANDGPCNHFIVQLHQNGLLKGDDMTERFFR
NITELSVAYCLSTEGMSSGTMQSPQQVQTLSFLAIDIYAKLVLSILKYCPVEQGLSKLFL
LSKILTVTVKVIQKEAEDKKASFNPRPYFRLFINWMLDLGSLDPVPDGVNFQILTAFANA
FHALHPLKVPAFSFAWLELVSHRSFMPKLLTGHAQKGWPYIQRLLVDLLQFLEPFLRNAE
LGGPVHFLYKGTLRVLLVLLHDFPEFLCDCHFTFCDVIPPSCIQMRNIILSAFPRNMRLP
DPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKAEVDEYLKMRPQGGSTFLTELKQRL
LLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQSRVPHGQSTASTAPMSVFLVSAALD
IFQTLIADLDTEGRYLFLNAIANQLRYPNNHTHYFSFILLYMFAEANQEIIQEQITRVLL
ERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPVDEG
MVSGWVSDSAH
NT seq
7236 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctttcctccacgctcgcaactcacgttcggtttctgctccagtcgttgacc
gaagccaacgccgaatcagtttctcgagagctctgccagttcattgaatatggtatcgag
ggaagcgttctggtgctgcagacttgcatggactgcttgaactctcacaagacagattca
aagaacttgcaatttgagcaagttgtagcatcaacttttagacacgcaatggacaagcca
aatttttgtactgtcttctgtcagtcgctaagtatggatatcagtgaggatttcttggag
aatttctcgaaagccatgcagttttccatttctgaaaaaattggcattggtcttgctcta
tctgattctgaaaatactgatacaagaatctgtgggaagaacttctgtatggctcaggtt
gaggaattgcactcgaatcctgcctcttttggttcgacagagcaaattcagaatatagtt
atgttcctccaatgctctggtgccctttccaagcacgtggattcctttatgcagatgtta
tctctagttcaagcaaatgatgctgcacagtttgttttaacaccaatactttcaaatgaa
ttacgcgaggataatttcttaaggaatattgatttcttcaatgaatctggagaaaatgat
tttgacacacttttggaagaaatggagaaggaagtgagtatggcagatatcattaaggaa
ctgggttatggatgcactgttgatgctgcacattgcaaagagattttatctctttgttta
cctctgacagagatgactatatctagaatacttggcacaattgtcttcacctatgctggg
cttgaggacaaccaaaccacgttttcaacatttagcctggtccttggttgccacacatca
tatgatttgccttcattgagctcttggaatattgatgttcttataaattctataaaacaa
cttgctcctgataccaactggatacgagttattgaaaacctggatcatgaggggttctac
attcctactgaggcagcattcacttttttcatgtctgtatatcaacatgcatgccaggac
ccctttccactccatgccatttgtggatccgtgtggaagaatattgaaggtcatctatct
tttctaagatacgctgtatcagcaatgccagatgtatttaccttttcccattctttgagg
aagctggcctatacggatgcagtgcatggccataagcttccccttggaaatgaaaatcat
gcctggctgtgtcttgatctcttagatgtgctatgtcaactagctgaaaggggtcacaca
agctctgttcgatcaatgcttgactatcccttaaaacactgttctgaaattctgcttctt
gggatggcacatgttaataccacttataatctcctccagcatgatgtcacttccacagtt
tttccaatgataattaaaaattccctgggtgctggtatggtacttcaactctggaatgtg
aatgctaatcttgttttgcggggatttgtagaagtacagaacactgagccagacaacatg
attagaattttggaagtttgtcaagagttgaagattttatcatcagtgctggagatgata
ccttttccttctggcattagattagcagtccttgcttccaggaatgaggtcatagatttt
gagaagtggttgagtaataacctgaatatatataaagatgtttttttggaggagtgccta
aagttcttgaaggagatacaatttggtgggtcacaagagttttctgccaaaccttaccgc
catgctactgatgtttcaaatctttatttggaagcttgttctaccattatcaagatcctt
aaagccaatactggggtgatatcctctactctgcttctcgaggaaattgaaaggttgcat
gtggcaattatgaattctactccaaagttgcagaatggtgggaccaaagagtcttcaacc
tctgacggatatggagatgatattgaggcagaagccaactcttactttcatcaaatgttt
tctgaacagttgaccactgatgctatggttcaaatgcttgcacgattcaaggaatcttct
gtgagaagggaacaagtgatattcgagtgcatgattgcgaatctatttgaagaataccga
tttttccccaagtatcccgaaagacagctcaaaattgctgcagttctctttggctctgtg
atcaagcagcaacttgtaactcacctaacgcttggaattgccttgcgtggtgttctagat
gcattgcgtaaacctacagattcaaaaatgtttttgtttggaaccaaggccttggagcag
tttgtggatcgtttgattgagtggccacaatattgtaaccatattttacagatatctcac
ctgcgtgccactcatccagaaattgttgcttccattgaacgagctcttgtcaggatttca
tcaggtcacttggattcagatgggaacaacaatccttctgttcatcacgagatttcctct
caggtgaccccaggaaacggggagttaaatagctctagcattgctcagcccgggccacaa
ctttcttctccacttcagcttgcaagacatgatagttctcatgatgaccgtcataaagcc
cttgctgcatcatcaaatgatgtgaaaccactgctagcttctgtagggcagcctccagtt
gcttccttgactgatgcttctagcaatcagaaaccgcaaggtgcagtcagtggttcatct
atgctgtctgcttctcctggttttgttcgttcttctcgcggcgttacttctactagattt
ggctctgctttgaacattgaaacactagttgctgctgctgagaggagagagaagccagta
gaggctcctgcatctgagattcaggacaagatatcatttataatcaataatatttcggtt
gcaaatcttgaagcaaaggggaaagagttcaccgaaatattgaaagaacaatactatact
tggtttgcccagtacatggttatgaaaagagcaagcattgagccaaattttcatgatttg
tatttgaagttccttgacaaagttaatttgaaggctttgaccaaagagatcatccaggct
acgtatgagaactgcaaggttttgttggggtcagagcttattaaatcaagctcagaagag
cggtcattgttaaaaaatttgggtagttggcttgggaagttgacaattggccggaatcaa
gttctgagagctcgtgaaatagatcccaaatctctgattatagaggcgtatgaaaagggg
ttaatgattgcagttatcccatttacttcaaagattcttgagccatgtcaaaacagtctg
gcataccaacccccaaatccctggaccatgggcattctggctttgctagctgagatttac
tcaatgccgaacttaaaaatgaatctcaagtttgacatagaggttctattcaagaatctt
agtgtggatatgaaggacattacaccaacttgtctcctcaaggatcgtaaaagagaactt
gagggcaacccggatttctctaataaagatgttggggcatcccaagcctcaatggttgca
gaaaaatctggaatggttcctcctcttagtcatgctgatttatctcttgagggtgctagt
ccacctaattctggtgggcctacacaattgccatctcagtatgctggccccttgcgactt
tcttctggtgcattaacggaggatgagaaactggcagctttaggcttgtctgaccagctt
ccttctgcgcaagggctatttcaagccactccatcgcagtcacctttttctgttagtcag
ctgtccgcgtcaattcctaacattggaactcacattattatcaatcagaagctcagttct
ctaggcttgcacttgcctttccagagggtagttccaatgtcaatggacagagctatcaaa
gagattgtagctggtattgttcagcgcagtgtttctatagcaactcaaacaacaaaggag
cttgttttaaaggattatgctatggaatcggatgagacacggatctataatgcagcacac
ttgatggttgcaagtttggctggaagtctagcacatgtgacatgcaaggaacctttacga
ggctctatatcaagtcatctgaggagttcacttcagggattgagcattggcagtgatctt
ctagagcaagctgttcagcttgttaccaatgataaccttgatcttggttgtgcggtgatt
gaacaggccgctacagataaggcaatacaaactattgatggagagatagctacccaactt
gctttaagaagaaagcatagggatcccacattttttgatccaaacatgtatggtcaaggt
tctgtgggtgttgtgcctgaagctcttcgacctaaaccaggccacttgtctctctctcaa
cagcgagtttatgaggactttgttcggcttccttggcaaaatcaatccggccagagttcg
catgctatatctgccagtccttcaagtttatctggcgatgctggtctcactgccacattt
ggttcaacatcagggcaagtgactcctggttacacatctgtcccagggaacttgggacaa
ttggatgttgcttctgaggcaattgaaactacgtcgggtgcccttttgagtgcttcctca
atccatattggcacagtagctgctcttacccaacagactactgaaaatgatcccctcgat
gcttcattcccttcaacaactggttcccctgaattacactcagtggataccactgatgct
gtaaaagaattgggacctacatcacagccggtacctttatctgctgccactgagcgtctt
ggaaatagcatatcggaggcttcactgagcacaagggatgcaatggataaatatcagata
gttgctctgaagttggaaagtttggtggcaactgatggtagagaagctgacatccaggga
ctgatctctgaggtacctgaaatcatactcagatgtataagtagggacgaggctgcactg
gctgtggctcaaaaggttttcaaaggcttatatgagaatgcatccaatagtcttcatgtc
agtgcccatctttctattctgtctgctgtccgtgatgtttgcaagcttgctgttaaagag
cttactagttgggtgatatattcagacgaggagcgaaaattcaacaaagaaatcactgtt
ggtcttattcgaagtgaattgctgaatcttgcggagtacaacgttcatatggcaaaactt
attgatgggggaaggaataaagctgctatggaatttgcaatatcgcttcttcaaactttg
gttactgatgaatccagagttatctcagaattccacaatcttgttgatgcgttggcaaag
gttgcttcaagacctggatatcctgaatcattgcaacatttgattgagatggtcagaaat
ccttcttcaagtatggctgttttatccactgcctctgatggaaaggaggataaggctagg
cagtctagagacaagaaggcacctggtcttgccccagctaacagggaagataatagtaat
atagaggcactagaaccagaccctgccggcttcaaggagcaggtttccatgttgtttgca
gaatggtgccagatatatgagcatcctggagcaaatgatgggccttgtaatcatttcatt
gtacaattgcatcaaaatggactgcttaaaggggatgatatgacagagcgctttttccgt
aatatcacggaactctctgttgcatattgcctatctaccgaaggcatgagttctggcacg
atgcagtcacctcagcaagtgcaaactctctcgttccttgccattgatatttatgcaaaa
cttgtgctgtcaatccttaagtattgcccagtggaacagggattaagtaaactatttctt
ttgtccaagattttgactgtcactgtgaaagttattcaaaaagaggcagaggataagaaa
gcatcttttaatccaagaccatatttcagattatttattaactggatgttagatctcggc
tccttggaccctgtccctgatggtgtgaattttcagattttgacagcctttgccaatgct
tttcatgctctgcatccccttaaagttcctgctttcagctttgcgtggctggagctagtc
agtcacaggagtttcatgccaaaattgctcactggacatgctcagaagggttggccctat
atccaacggttgctggtagacttgcttcagttcctggagccttttttgaggaatgctgag
ctcggagggccggttcatttcctctataaaggcacactaagggtcctgctagttcttctt
cacgactttcctgagttcctgtgtgattgtcattttaccttttgtgatgtgattcctccg
agctgcatacagatgcggaacattatccttagtgcttttcctcgcaatatgaggttacca
gatccatctactcccaatttaaagattgatttgcttccagaaatcagagaaccccctcgc
atcctctctgaggttgatgctgctcttaaagcaaaacagatgaaggctgaagtagatgag
tatctcaagatgaggccccaaggaggatctacatttctaactgaactgaaacaaagacta
ctcctttcacctagcgaggcagcatcagctggtacccgttataatgtaccattgatcaac
tcactggtgctttatgttggtatgcaggccattcagcaactgcagtcaagagtacctcat
ggacaatcgacagcaagcactgctccaatgagtgtgtttttggttagtgcggccttggat
atattccagactctaatagcggaccttgatactgaggggcgttatctgtttctcaatgca
attgctaaccaattgcgatatccaaacaaccatacacattacttctccttcatcttacta
tacatgtttgccgaagcgaatcaggaaataatccaggagcaaattacaagagttttgttg
gaacggctgattgttaataaacctcatccttggggtcttctaattaccttcattgagctc
ataaagaatccaagatacaacttctggaatcgatcgttcattaggtgtgcgcctgagatt
gaaaaactctttgaatctgttgcaaggtcatgtgggggcctgaaacctgtggacgagggt
atggtttctggttgggtgtctgatagcgcacactga
DBGET
integrated database retrieval system
