Hibiscus syriacus (Rose-of-Sharon): 120169502
Help
Entry
120169502 CDS
T09559
Name
(RefSeq) probable pectate lyase 1 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr00040
Pentose and glucuronate interconversions
hsyr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120169502
Enzymes [BR:
hsyr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120169502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
KxYKxGKxW_sig
Motif
Other DBs
NCBI-GeneID:
120169502
NCBI-ProteinID:
XP_039033561
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MTVPKKWIFASLAVLLLLIAGATATVRTNGASSNVESEKHRSSTMAARHAMDDPDAVAAE
VQASIDMNIRNVTERRELGYFSCGTGNPIDDCWRCDPNWQKNRKRLADCSIGFGRNAIGG
RDGRFYVVTDPNDDDPVNPKPGTLRHAVIQEQPLWIVFKRDMVIKLKQELLVNSFKTIDG
RGVNVHIANGACITIQFVTNVIVHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIF
GSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVT
IAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPRNPFA
KEVTKRVDTAQGKWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMIRAM
TSNAGALPCRRGRQC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcccaagaaatggattttcgcttctttagctgttctgcttttgcttattgct
ggagcaacggccactgtacggacaaacggagcttccagcaatgtggagtcggagaagcat
cggagctcaacaatggcagctaggcatgccatggatgatccagatgccgttgcagccgag
gtccaggccagtatcgacatgaatattcgaaatgtgactgagaggagggagttggggtac
ttttcctgcggaaccggtaaccccattgatgattgttggcgttgtgaccccaactggcaa
aagaaccggaagagactcgccgactgcagcatcggtttcggaaggaatgcgatcggtggg
cgtgatggacgcttctatgtcgtcactgatcctaatgatgatgaccctgttaaccctaag
cccgggaccttgcgtcacgctgtgatccaggagcagcccctatggattgtgttcaagagg
gacatggttatcaagttgaaacaggagttgcttgtcaacagcttcaagaccatcgatggt
cgtggggtgaatgtccatatcgctaacggggcatgcatcaccatccagttcgttaccaat
gtgattgttcatggtctccatattcatgactgtaagcccactggcaatgccatggtgaga
agctcaccctctcactttgggtggaggacgatggccgacggagatgcgatttccatcttc
ggctcgagtcacatctgggtcgaccacaattctctctcgaactgtgccgatggtcttgtc
gatgctgtcatgggctcgactgccattaccatctccaacaaccacatgacccaccacaac
gaggtgatgttgctgggccacagtgactcgtacacaagggacaagcagatgcaagtgacc
attgcgtacaaccattttggagaggggcttgtacagagaatgccaaggtgcaggcatggg
tatttccatgtggtaaacaacgattacactcactgggaaatgtatgcaattggtggaagt
gcaaatccaaccataaacagccagggtaatagatacgcagctccgaggaacccattcgca
aaggaggtaaccaagagagtggatacagctcaaggcaagtggaaaggctggaactggagg
tctgaaggcgacctgctacttaatggtgcatatttcaccccatctggtgctggagcctcc
gccagctatgccagggcctcaagcttgggggccaagtcctcctccatgatcagggccatg
acttccaatgccggcgctctaccctgccgccgaggcaggcaatgctag
DBGET
integrated database retrieval system
