Hibiscus syriacus (Rose-of-Sharon): 120208411
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Entry
120208411 CDS
T09559
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hsyr
Hibiscus syriacus (Rose-of-Sharon)
Pathway
hsyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120208411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsyr03019
]
120208411
Messenger RNA biogenesis [BR:
hsyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120208411
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120208411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
120208411
NCBI-ProteinID:
XP_039063627
LinkDB
All DBs
Position
Unknown
AA seq
2414 aa
AA seq
DB search
MLNLSSTLSTHVRFLLQSLTEANAESVSRELRQLIDYGIEGSILVLQTCLDCLNSHKADS
RNLQFEQVVASTFRHAMDKPNFCTVFCQSLSMDISEDFLENFSKAMQFSMSEKIGIGLAL
SDSENPDTRICGKNFCMAQVEELHSNPASFDSTEQSQNIVMFLLCSGALSKHVDSFMQML
SLVQANDAAQFVLTPILSDELREKSFLRTMDFFNESGENDFDTLLEEMEKEVSMADIIKE
LGYGCTVDAAHCKEILSLCLPLTEITISRILGTIVFTYAGLEDNQTTFSTFSLVLGCHTT
YDLPSLSSWNIDVLIKTIKQLAPDTNWIRVIENLDHDGFYIPTEAAFTFFMSVYKHACQD
PFPLHAICGSVWKNIEGQLSFLRYAVSALPDVFTFSHSLRKLAYTDVVHGHKLPLGSDNH
AWLCLDLLDVLCQLAERGHTSFVRSMLDYPLKHCPEVLLLGMAHVNTAYNLLQHDVTSAV
FPMIIKNSLGAGMVLHLWNVNASLVLRGFVEVQNTDPDSMIRILEVCQESKILSSVLEMI
TFPSGIRLAVLASRKEIIDFEKWLIGNLNIYKDVFLEECLRFLKEIQFGGSQEFSAEPFR
HATAVSNLYLEACSTIIKILKANTGVIGSTLLLEDIERLHAAIMDSIPKLQNGGTTESST
SDGYGDEIEAEANSYFHQMFSEQLTTDAMVQMLARFKESSVKREQVIFECMIANLFEEYQ
FFPKYPERQLKIAAVLFGSAIKQQLVTHLTLGIALRGVLDALRKPTDSKMFLFGTKALEQ
FVDRLIEWPQYCNHILQISHLRATHPEIVSSIERALVRISSGHLESDGSNNPSVHHRVSS
QVTPGNGELNSSSIAQPGPQLSSPLQLTRLDSSHDDRHKAPAASSNDVKPLLSSVGQPSV
ASLTDASRIQKPQGAVSGSSMLSVSPGFVRSSRSVTSTRFGSALNIETLVAAAERREKPI
EAPASEIQDKISFIINNISVANLEAKGKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDL
YLKFLDKVNSKVLTKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQ
VLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQNSLAYQPPNPWTMGILALLAEIY
SMPNLKMNLKFDIEVLFKNLSVDMKDIAPTCLLKDRKRELEGNPDFSNKDVGASQASMVA
EKSGIVSPLNHADLSLEVASPPNSGGPTQFPSQYAGPLHLSSGALTEDEKMAALGLSDQL
PSAQGLFQATPSPSPFSVSQLSASIPNIGTHIIINQKLSSLGLHLPFQRVVPMSMDRAIK
EIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLR
GSISTHLRSSLQGLSIGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIATQL
ALRRKHRDPTFFDPSMYGQGSVGVVPEALRPKPGHLSLSQQRVYEDFVRLPWQNQSGQSS
HAISASPSSLSGDAVLTATFGSTSGQGTPGYASTPVNLGQLDVASEAIEPTSAALLSASS
IHIGTGAALTQQTTENDCLNVSFPSTTMAPELQSVDTTDAVKELGPTQQPVPSSAITERL
GNSISEASLSTRDALDKYQIVALKLESLVATDGREADIQGLISEVPEIILRCVSRDEAAL
AVAQKVFKGLYENASNSLHVGAHLAILAVVRDVCKLAVKELTSWVIYSDEERKFNKEITV
GLIRSELMNLAEYNVHMAKLIDGGRNIKYAEAAMEFAISLLQTLVTDESRVLSEFHNLVD
ALEKVASKPGSPESLQHLIEMARNPSSSMAVLSTVSVGKEDKARQSRDKAPGLAPSNRED
NSNIEALEPDPAGFKEQVSMLFAEWCQIYEHPGANDGPCNHFIVQLHQNGLLKGDDMTER
FFRNITELSVAYCLSNEGMSSGTLQSPQQLQTLSFLAIDIYAKLVLSILKYCPVEQGLSK
LFLLSKILTVTVKVIQKEAEDKKASFNPRPYFRLFIDWMLDLVSLDPVPDGANFQILTTF
ANAFHALHPLKVPAFSFAWLELVSHRSFMPKLLIGHAQKGWPYIQRLLVDLLQFLEPFLR
NAELGGPVHFLYKGTLRVLLVLLHDFPEFLCDCHFTFCDMIPPSCIQMRNIILSAFPRNM
RLPDPSTPNLKIDLLPEIREPPRILSEVDAALKAKQMKAEVDEYLKMRPQGGSTFLTELK
KRLLLSPSEAASAGTRYNVPLINSLVLYVGMQAIQQLQSRVPHAQSTASTAPMSVFLVSA
ALDIFQTLIADLDSEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFAEANQEIIQEQITR
VLLERLIVSKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPV
DEGMVSGWVSDSAH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacctttcttccacgctctcaactcacgttcggtttctgctccagtcgttgacc
gaagccaacgccgaatcagtttctcgagagctccgccagttaattgattatggcattgag
ggaagcattctggtgctgcagacttgcttggactgcttgaactctcataaggcagattca
aggaacttgcaatttgagcaagttgtagcatcaacttttagacacgcaatggacaagcca
aatttttgtactgtcttctgtcagtcgctaagtatggatataagtgaggatttcttggaa
aatttctcgaaagccatgcaattttccatgtctgaaaaaattggcattggtcttgcttta
tctgattctgaaaaccctgatacaagaatctgtgggaagaacttctgtatggctcaggtt
gaggaattgcactccaatcctgcctcttttgattctactgagcaaagtcagaatatagtt
atgttcctcctgtgctctggtgccctttccaagcacgtagattcctttatgcagatgtta
tctctagttcaagcaaatgacgctgcacagtttgttttaactccgatactttcagatgaa
ttacgcgagaagagttttttaaggactatggatttcttcaatgaatctggagaaaatgat
tttgacactcttttggaagaaatggagaaggaagtgagtatggcagatatcatcaaggaa
ctgggttatggatgcactgttgacgctgcacactgcaaagagattttatctctttgttta
cctctgacagagataactatatctagaatacttggcacaattgtcttcacctatgctggt
cttgaggacaaccaaaccacgttttcaacatttagcctggtccttggttgccacacaaca
tatgatttgccttcattgagctcttggaatattgatgttcttataaaaactataaagcaa
cttgctcctgataccaactggatacgagttattgaaaacctggatcatgatgggttctac
attcctactgaggcagcattcacttttttcatgtctgtatataaacatgcatgccaggac
ccctttccactccatgccatttgtggatccgtgtggaagaatattgaaggtcagctatct
tttctaagatatgctgtgtcagcattgccagacgtatttaccttttcccattctttgagg
aagctggcctatacagatgtagtgcatggccataagcttccccttggaagtgacaatcat
gcctggctgtgtcttgacctcttagatgtgctatgtcaactagctgaaaggggtcacaca
agctttgttcgatcaatgcttgactatcccttaaaacactgccctgaagttctgcttctt
gggatggcacatgttaataccgcttataatctcctccagcatgatgtcacttccgcagtt
tttccaatgataattaaaaattccctgggtgctggtatggtacttcatctttggaatgtg
aatgctagtcttgttttgcggggatttgtagaagtacagaatactgatccagacagcatg
attagaattttggaagtttgtcaagagtcgaagattttatcatcagtgctggagatgata
acttttccttctggcattagattagcagtccttgcttccaggaaagagatcatcgatttt
gagaagtggttgattggtaacctgaatatatataaagatgtttttttggaggagtgtcta
aggttcttgaaggagatacaatttggtgggtcacaagagttttctgccgaacctttccgt
catgccacagctgtttcaaatctttatttggaagcttgttctactattatcaagatcctt
aaagctaatactggggtgataggctctactctgcttctcgaggatattgaaaggttgcat
gcggccattatggattctattccaaagttgcaaaatggtgggaccacagagtcttcaacc
tctgacggatatggagatgagattgaggcagaagccaactcttactttcatcaaatgttt
tctgaacagttgaccactgatgctatggttcaaatgctagcacgattcaaggaatcttct
gtgaaaagggaacaagtgatatttgagtgcatgattgcgaatctatttgaagagtaccaa
tttttccccaagtatcccgaaagacagctcaaaattgctgcagttctctttggctctgcc
atcaagcagcaacttgtaactcacctaacgcttggaattgccttgcgtggtgttctagat
gcattgcgtaaacctacagattcaaaaatgtttttgtttggaaccaaggccttggagcag
tttgtggatcgtttgattgagtggccacaatattgtaaccatattttacagatatctcac
ctgcgtgcaactcatccagaaattgtttcttccattgaacgagctcttgtcaggatttca
tcaggtcacttggagtcagatgggagcaacaatccttctgttcatcaccgggtttcctct
caggtgaccccaggaaacggggagttaaatagctctagcattgctcagcctgggccacaa
ctttcttctccactgcagctcactagacttgatagttctcatgatgaccgtcataaagcc
cctgctgcatcatctaatgatgtgaagccactgctatcttctgtagggcagccttcagtt
gcttccttgactgatgcttctagaattcagaaaccgcaaggtgcagtcagtggttcgtct
atgctgtctgtttctcctggttttgttcgttcttctcgcagtgttacttctactagattt
ggctctgctttgaacattgaaacactagttgctgctgctgagaggagagagaagcccata
gaggcacctgcatctgagattcaggacaagatatcatttataatcaataatatttcagtt
gctaatcttgaagcaaaggggaaagagttcaccgaaatattgaaagaacagtactatcct
tggtttgcccagtacatggttatgaaaagagcaagcattgagccaaattttcatgatttg
tatttgaagttccttgacaaagttaattcgaaggttttgaccaaagagatcgtccaggct
acatatgagaactgcaaggttttgttggggtcagagcttattaaatcaagctcagaagag
cggtcattgctaaaaaatctgggtagttggcttgggaagttaacaattggccggaatcaa
gttctgagagctcgtgagatagatcccaaatctctgattatagaggcgtatgaaaagggg
ttaatgattgctgtaatcccatttacttcaaagattcttgagccatgtcaaaacagtctg
gcataccaacccccaaatccctggaccatgggcattctggcgttgctagctgagatttac
tcaatgccaaacttaaaaatgaatctcaagtttgacatagaagttttattcaagaacctt
agtgtggatatgaaggacattgcaccaacttgtcttctcaaggatcgtaaaagagaactt
gagggcaacccggatttctctaataaagatgttggggcatcccaagcctcaatggttgca
gaaaaatctggaatagtttctcctcttaatcatgctgatttatcccttgaggttgctagt
ccacctaattctggcgggcctacacaatttccatctcagtatgctggccccttgcatctt
tcttctggtgcattaacggaggatgagaaaatggcagctttaggcttgtctgaccagctt
ccttcagcacaagggctatttcaagccactccatcgccgtcacctttttctgttagtcag
ctgtcagcgtcaattcctaacattgggacacacattattatcaatcagaagctcagttct
ctaggattgcacttgcctttccagagggtagttccaatgtcaatggacagagctatcaaa
gagattgtagctggaattgttcagcgcagtgtttctatagcaactcaaacaacaaaggag
cttgttttaaaggattatgctatggaatcggatgagacacggatttataatgcagcacac
ttgatggttgcaagtttggccggaagtctagcacatgtcacatgcaaggaacctttacgt
ggctctatatcaactcatctgaggagttcacttcagggattgagtattggcagtgatctt
ctagaacaagctgttcagcttgttaccaatgataaccttgatcttggctgtgcagtgatt
gaacaggctgctacagataaggcaatacaaactattgatggagagatagctacccaactt
gctttaagaagaaagcatagagatcccacattttttgatccaagcatgtacggacaaggt
tctgtgggtgttgtgcccgaggctcttcgacctaaaccaggtcacttgtctctctctcag
cagcgagtttatgaggactttgttcggcttccttggcaaaatcaatctggccagagttcg
catgctatttctgccagtccttcaagcttatctggtgatgctgttcttactgccacattt
ggttcaacatctgggcaaggtactcctggttatgcatctaccccagtgaacttgggacaa
ttggatgttgcgtctgaggcaattgaacctacatcagctgctcttttgagtgcttcctca
atccatattggcacaggagctgctcttacccagcagactactgaaaatgattgcctcaat
gtttcattcccttccacaactatggcccctgaattacaatcagtggataccactgatgct
gtaaaagaattgggacctacacaacagccagtaccttcatctgctatcactgagcgtctt
ggaaatagcatatcggaggcttcactgagcacaagggatgctttggataaatatcagata
gttgctctgaagttggaaagtttggtggcaactgatggtagagaagctgacatccaggga
ctgatctctgaggtacctgagatcatactcagatgtgtaagtagggacgaggctgcactg
gctgtggctcaaaaggttttcaaaggcttatatgagaatgcatccaatagtcttcatgtc
ggtgcccatcttgctatcctggctgttgtccgtgatgtttgcaagcttgctgttaaagag
cttactagttgggtgatatattcagacgaggagcgaaaattcaacaaagaaatcactgtt
ggtcttattcgaagtgaattgatgaaccttgcggagtacaacgtacacatggcaaaactt
attgatgggggaaggaatattaaatatgcagaagctgctatggaatttgcaatatctctt
cttcaaactttggttactgatgaatccagagttctctcagaattccacaatcttgttgat
gcgttggaaaaggttgcttcaaaacctggatctcctgaatcattgcagcatttgattgag
atggccagaaatccttcatcaagtatggctgttttatccacggtctctgttggaaaggag
gataaggctaggcagtctagagacaaggcacctggtcttgccccatctaacagggaagat
aatagtaatatagaggcactagaaccagaccctgccggcttcaaggagcaggtttccatg
ttgttcgcagaatggtgccagatatatgagcatcctggagcaaatgatgggccttgtaat
catttcattgtacaattgcatcaaaatggactgcttaaaggggatgatatgacagagcgc
tttttccgtaatatcacggaactctctgttgcatattgcctatctaatgaaggcatgagt
tctggcacattgcagtcacctcagcaattgcaaactctctctttccttgccattgatatt
tatgcaaaacttgtgctgtcaatccttaagtattgcccagtggaacagggattaagtaaa
ctctttcttttgtccaagattttgactgtaactgtgaaagttattcaaaaagaggcagag
gataagaaagcttcttttaatccaagaccatattttagattatttattgactggatgtta
gatcttgtttccttggaccctgtccctgatggtgcaaactttcagattttgacaaccttt
gccaatgcttttcatgctctgcatccccttaaagttcctgccttcagctttgcatggttg
gagcttgtcagtcacaggagtttcatgccaaaattgcttattgggcatgctcagaagggt
tggccctatatccaacggttgctggtagacttgcttcagttcttggagccttttttgagg
aatgccgagctcggagggccggttcattttctctataaaggcacactaagggtcctgctg
gttctgcttcatgactttcccgagttcctgtgtgattgtcattttaccttttgtgatatg
attcctccgagctgcatacagatgcggaacattatccttagtgcttttccacgcaatatg
aggttacccgatccatctactcctaacttaaagattgatttgcttccagaaatcagagaa
ccccctcgcatcctctctgaggttgatgctgctcttaaagcaaaacagatgaaggctgaa
gtagatgagtatctcaagatgaggccccaaggaggatctacatttctaactgaactgaaa
aaaagactacttctttcacctagcgaggcagcatcagccggtacccgttataatgtacca
ttgatcaattcactagtgctttatgttggtatgcaggccattcagcaattgcagtcaaga
gtacctcatgcacagtcaacagcaagcactgctccaatgagtgtgtttttggttagtgct
gccttggatatattccagactctaatagcggaccttgatagtgaggggcgttatctgttt
ctcaatgcaattgccaaccaattgcgatatccaaacaaccatacacattacttctccttc
atcttactatacttgtttgccgaagcaaatcaggaaattatccaggagcaaattacgaga
gttttgttggaacggctgattgttagtaaacctcatccttggggtcttctaattaccttc
attgagctcataaagaacccaagatacaacttctggaatcgatctttcattaggtgtgca
cccgagattgaaaaactcttcgaatccgttgcaaggtcatgtgggggactgaaacctgtg
gacgagggtatggtttctggttgggtttctgatagcgcacactga
DBGET
integrated database retrieval system
