Hymenobacter tibetensis: MTX78_19515
Help
Entry
MTX78_19515 CDS
T08236
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
htb
Hymenobacter tibetensis
Pathway
htb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MTX78_19515 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htb03021
]
MTX78_19515 (rpoB)
03400 DNA repair and recombination proteins [BR:
htb03400
]
MTX78_19515 (rpoB)
Enzymes [BR:
htb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MTX78_19515 (rpoB)
Transcription machinery [BR:
htb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MTX78_19515 (rpoB)
DNA repair and recombination proteins [BR:
htb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MTX78_19515 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
YtxH
Motif
Other DBs
NCBI-ProteinID:
UOG77278
UniProt:
A0ABY4D4H4
LinkDB
All DBs
Position
complement(4850358..4854233)
Genome browser
AA seq
1291 aa
AA seq
DB search
MQKLQAADERINFAKIKKVIEYPDFLDVQVRSFMDFFQLETAAENRTDEGLFKVFAENFP
ISDSRENFVLTFIDYHVDPPKYSVDECIDRGLTYSVPLKAKLRLVCNDTDNEDFETIEQE
VFLGNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWI
EFATDVNNVMYAYIDRKKKFPVTTLLRAIGYGTDKDILDLFGLSEEVKADRKNLKRAVGR
KLAARVLRTWTEDFVDEDTGEVVSIDRNEVLLERDSTIQEDDIETILNAGPKSVILHKEN
VNIADFAIIYNTLQKDNSNSEKEAVEQIYRQLRNTEAPDEETARDIIQKLFFSDKRYDLG
DVGRYRINKKLGIDMSQEARVLTNQDIVLIVKYLIGLINSKAIVDDIDHLSNRRVRTVGE
QLYAQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQT
NPLAEVTHKRRVSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVH
ARVNSMGFIETPYRNVEGGKVDVSSNVKYLTAEEEDTHHIAQANARIDEEGNFTNELVKG
RFEGDFPVVGPSEYSYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAE
APIVGTGLEGRVASDSRTLVVAEGDGVIDYVDANRIVVRYDLTEDDILVSFDAEKISYDL
IKFRRTNQDTCINLTPLVKTGERVVKGQVLCEGYGTNKGELALGRNMQVAFMPWQGYNFE
DAIVISEKVVRDDIFTSIHIEEFELEVRETKRGEEELTSEIPNVSEEAVRNLDDNGIIRL
GAEVKEGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLNGVVIGTKL
FSRPKKDKNLRAKSKKEVEELKDAYAKELRAVKAVMVDKLVQLLEGKTSQGVKHKFGDEI
LAKGAKFGKKNIADALFPEKNPYKDESNYAVPEEVNMFKDLVLEGWTADARVNTMVTQLV
KNYAKRRNTITARFKRDRFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGV
VARIVRDEDMPFLPDGTPMDIVLNPLGVPSRMNIGQIYETVLGWAGLKLGRTYATPIFDG
ATEEEVSKELTEAGLPHFGRAYLHDGLTGQRFDQPVTVGVIYMLKLGHLVDDKMHARSIG
PYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASNVLQEILTVKSDDVVGRAKAYEAIV
KGDVLPKPNIPESFNVLIHELRGLALEITLE
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaagctgcaggccgctgacgagcggatcaattttgccaagattaaaaaggttatc
gagtatccggatttcctagacgtgcaggttcgctcgtttatggacttcttccaattggag
acggctgccgaaaaccgcaccgatgaggggcttttcaaggtattcgccgagaactttcca
atttcggactcgcgtgaaaactttgtcttgacctttatcgactatcacgtagatcctccg
aaatattcggtggatgagtgtattgatcgtggcttgacgtattcagtgccgttgaaagca
aagttgcgcctagtctgcaatgacacggacaacgaagatttcgagactatcgagcaggaa
gtgtttttgggaaatatcccctacatgaccgaaaagggctcattcgttatcaacggggct
gagcgtgttatcgtatcacagttgcaccgttcgccaggtgtgttctttgcgcaaagcaag
cacaccaacggcacaaagctgtattcagcccgtattattccgttcaaaggttcgtggatt
gaattcgccacggacgtgaacaacgtgatgtacgcttacatcgaccggaaaaagaagttt
ccggttactacgctgctccgcgccatcggttacggaaccgataaagacattctagatttg
ttcgggctgtcggaagaggtgaaggccgaccgcaagaacctgaagcgcgccgtaggccgt
aagctagctgcccgggtactgcgcacttggacggaagacttcgtggatgaggataccggt
gaagtggtgtctatcgaccggaacgaagtgttgttggagcgtgactcgactattcaggaa
gacgacattgaaacgattctcaatgcaggccctaagtcggtgattctgcacaaggagaac
gtgaacatcgcggacttcgctatcatatacaacacgctgcagaaggataactccaactcg
gagaaagaagccgttgagcagatttatcgtcaactccggaacacggaggctcccgacgaa
gaaactgcccgcgacattatccagaagctattcttctcggacaagcgctacgacctcggt
gatgtaggccgctaccgtatcaacaagaagcttggcatcgacatgagccaggaggctcgg
gtattgaccaaccaggacatcgttttgattgtgaagtatctgatcggtctgatcaactcg
aaggctattgtcgacgacattgaccacttgagcaaccgtcgggtacgcacggtaggggag
cagttgtacgctcagtttggcgtaggtctggcccgtatggcgcgtactatcaaggagcgc
atgaacgtgcgtgacaacgaggatttcaagccagttgatctgatcaatgcccgtactctg
tcgagcgttatcaactcgttcttcggcaccaaccagttgtcgcagttcatggaccaaacc
aatccgttggctgaggtgacgcacaagcgtcgcgtatcggcactcgggccaggaggtctg
tcgcgcgaacgggccggtttcgaagtacgtgatgttcactacacgcactacggccgtctg
tgcaccatcgaaacgccggaaggaccgaacatcggtctgatttcgtcgctttgcgtgcat
gctcgtgttaattcgatgggcttcattgagacaccttaccgcaacgtagaaggtggtaaa
gtagacgttagctcgaatgtaaaatacctgacagctgaggaagaagacacccaccacatt
gcgcaggctaacgcccgtatcgatgaggaaggaaactttacgaacgaacttgtaaaaggt
cgttttgaaggtgacttcccggtagtaggtccttcggagtacagctacatggacgtagcc
cccaaccagattgtatcggttgctgcttcgctgattcctttcttggaacacgatgacgct
aaccgcgccctgatgggttcgaacatgcagcgccaggcagttccgctgttgaaggctgag
gctccaattgtgggcaccggtttggaaggccgcgtagccagtgattctcgtactctggta
gtagcagaaggtgacggcgtaatcgactacgttgatgctaaccgcatcgtggtacgttac
gacctgacagaggacgatattcttgtaagcttcgatgctgagaagatttcgtatgacctc
atcaagttccgccgtaccaaccaagatacttgtatcaacctaacgccgctggtgaagact
ggtgagcgggtagtgaaaggtcaggtactctgcgaaggttacggcaccaacaaaggtgaa
ctagccctcggccgtaacatgcaggtggcgttcatgccatggcagggttacaacttcgag
gatgccattgtcatctcggagaaagtagtgcgcgacgatatcttcacttcgattcacatc
gaagagttcgagttggaagtgcgcgaaaccaagcgtggtgaagaagaactgacttcggag
attccgaacgtgagcgaagaggctgtccgcaacctcgacgacaacggtattatccgtttg
ggtgctgaagtgaaagaaggcgacattctgatcggtaaaatcacgcctaagggcgagacg
gacccgaccccggaagagaagctgctccgtgccatctttggtgacaaagccggcgacgtg
aaggatgcttcgcttaaggcgccgccatccttgaacggtgttgttatcggcaccaagcta
ttctcgcgtcctaagaaagacaaaaacctccgggctaagtcgaagaaggaagtggaagag
ttgaaggatgcctacgcaaaggagttgcgtgcagtgaaagccgtaatggttgataagctg
gtgcagttgctggaaggcaaaacctcgcaaggggtgaagcacaagttcggcgacgaaatc
ctagcgaagggtgccaaattcgggaagaagaacattgcggatgcactgttccctgagaag
aacccttataaggatgagagcaactatgctgttccagaggaagtgaacatgttcaaggac
ctagttcttgaaggatggactgctgatgctcgcgtaaacacgatggtgacgcagttggtg
aagaactacgctaagcgtcgtaacaccatcacggcccgcttcaagcgtgaccggtttacg
ttggaagtaggtgatgaactgccagcaggcatcgtgcaactagctaaagtatatatcgcc
aagaagcgcaagctgaaggtgggtgataaaatggctggtcgtcacggtaacaaaggggtg
gtagcccgcatcgtgcgcgatgaggacatgccgttcctgccagatggtacgccaatggat
atcgtgctcaacccgcttggtgtaccaagccgtatgaacatcggtcagatctacgagacg
gtattgggctgggccggcctcaagttgggtcgcacctatgctaccccaattttcgacggt
gctaccgaagaggaagtatcaaaggaattgacggaagctggtttgccacacttcggtcgt
gcttacctacacgacggtctgactggtcagcgtttcgaccagccggtgacggttggtgtg
atttacatgctgaagttgggtcaccttgttgatgataagatgcacgctcgttctattggt
ccgtactcgctcatcacgcagcagccgctgggtggtaaggcgcagttcggtggccagcgc
ttcggcgagatggaagtatgggcgcttgaggcgtttggtgcttccaacgtactccaggaa
atcttgactgtgaagtcggacgacgtggtaggccgtgctaaagcgtacgaagccattgta
aaaggtgacgtattgcccaagccaaatatccccgagtcattcaacgtactcattcatgag
ctacgtggtctggctttggaaatcacattagagtaa
DBGET
integrated database retrieval system
