KEGG   Hydrogenobacter thermophilus: Hydth_0489
Entry
Hydth_0489        CDS       T02106                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
hte  Hydrogenobacter thermophilus
Pathway
hte02024  Quorum sensing
hte03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hte00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hydth_0489
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Hydth_0489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hte03019]
    Hydth_0489
   03036 Chromosome and associated proteins [BR:hte03036]
    Hydth_0489
Messenger RNA biogenesis [BR:hte03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Hydth_0489
Chromosome and associated proteins [BR:hte03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Hydth_0489
SSDB
Motif
Pfam: Hfq Hfq_1 DUF5608 LSM
Other DBs
NCBI-ProteinID: ADO44890
UniProt: D3DGK3
LinkDB
Position
482361..482603
AA seq 80 aa
MPYKLQESFLNTARKRRVKVTIYLVNGVRLQGRVRSFDLYTILIEDGRQQTLVYKHAITT
IIPAEKLEIEFEEEGVPGAV
NT seq 243 nt   +upstreamnt  +downstreamnt
atgccctataagctacaggagagctttctaaacacagcaaggaagagaagggtcaaggtg
accatatatttggtgaatggcgtcaggcttcagggaagggtaagatcctttgacctttac
accatacttatagaggacggtcggcagcagacgctggtttataagcacgccataactacc
ataatacctgctgaaaagcttgagattgaatttgaggaggaaggagtgccgggggctgtg
taa

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