Hydrogenovibrio thermophilus: EPV75_01965
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Entry
EPV75_01965 CDS
T05808
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
htr
Hydrogenovibrio thermophilus
Pathway
htr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EPV75_01965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htr03021
]
EPV75_01965 (rpoB)
03400 DNA repair and recombination proteins [BR:
htr03400
]
EPV75_01965 (rpoB)
Enzymes [BR:
htr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EPV75_01965 (rpoB)
Transcription machinery [BR:
htr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EPV75_01965 (rpoB)
DNA repair and recombination proteins [BR:
htr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EPV75_01965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QAB14516
UniProt:
A0A451G4V3
LinkDB
All DBs
Position
432316..436374
Genome browser
AA seq
1352 aa
AA seq
DB search
MAYSLTEKKRIRKDFATRPSILEVPYLLSLQKESFKEFLQIDKKPLERDPVGLHAAFSSV
FPINGVAGTADLEYVSYTMGQPEFDVKECKQRGVTYSSPLRVKMRLVLFDKDAPAGKRPV
KDVKEQEVYLGDVPLMTENGTFVINGTERVIVTQLHRSPGVIFDSDRGKSHSSGKVLFNA
RIIPYRGSWLDFEFDHNDCVFVRIDRRRKLPVSVIFRAMGFSTEEVLDTFFDHSEISYKS
GKYVMKFEPEQLKGQTAAFDITDGKEVYVKAGKKITARTIKQLQEAKVKTIVVPDEFLVG
KVLSAGIMNQETGELVARANEVMTADLVENIKAIKGLSFKVLFIDDLENGAYISDTLNLD
TTTSQLEAQIEIYRMMRPGEPPTKESSEALFNSLFFDDSRYDLSSVGRMKLNRRLGRKDN
DGSLVLENQDIVDVVKELLNIRNGLSTIDDIDTLGNRRIRAVGEMAENAFRVGLVRVERA
VKERLNQAETDGLLPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLAIYAKTNKYGFLETPYRKV
VDGQVTDEVEYVSAIDEAQFVIAQASAATDDKNNLMDELVTARHKNETILASSKDVDYMD
VSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIEKTVAIDSGV
TVIANRGGEVVSADAARIVVRANQDEIAVGETGVDIYNLIKYQRSNQNTCINQKPIVKAG
DTVSRGDVLADGPSTDLGELAIGQNMRIAFMPWNGYNFEDSILVSERVVQEDRYTSIHIE
ELTCLARDTKLGPEEVTSDIPNVGEAALSRLDESGIVYVGAEVKQGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVGKGVEGTVIDVQVFTREGVKKDARAMAIQEDELQ
HVRKDIDEQYKILEVDTLSRIEQMLVGQKLVDGKTVTAEMLADLPSQKWFGLNLKDEELV
NHLEALEKQLVLKKEELNNAFEEKKKKLTQGDDLQPGVSKMVKVYVAVKRRIQPGDKMAG
RHGNKGVISRICPVEDMPYDETGRPVDICLNPLGVPSRMNVGQILETHLGLAAAGLGEKI
NAMLEQQADIKELKGFLHKVYNETQGQSVDFDSLSDAEIIELAGNLRKGVPMASPVFDGA
SEDQIKALLRLADLPESGQMTLFDGISGQKFDRPVTVGYMYYLKLNHLVDDKMHARSTGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSDDLNGRTKMYKNIVD
GNEYMEPGIPESFSVLRKEIRALGIDIELEQE
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atggcctattctttaactgaaaagaaacgtattcgtaaagattttgcgacacgaccttct
attctagaagttccatatcttctttctttgcaaaaagagtctttcaaagagtttttgcag
attgataagaagccacttgaaagagatccggtaggtttgcatgctgccttttcttctgtc
tttccgattaatggtgttgccggaacggcggacttggaatacgtcagttataccatgggt
cagcctgagtttgatgtaaaagaatgtaagcagcgcggtgtgacttattcctcgccacta
cgcgttaagatgcgtttggtgctgtttgataaggatgcaccggccggtaagcgccctgta
aaagacgttaaagaacaagaagtgtatctgggtgacgttccgttgatgacggaaaacggg
acttttgttattaacggtaccgagcgtgttatcgtgacacaattgcaccgttcgcctggc
gtaattttcgacagtgaccgtggtaagtctcactcctccggtaaagtcttgttcaatgcg
cgcatcattccgtatcgtggttcctggttggattttgaattcgatcacaacgattgtgtg
ttcgttcgtatcgaccgtcgtcgtaaattgccggtttcggttattttccgcgcaatgggc
ttctcgaccgaagaagtgttggataccttctttgatcattctgagatttcttataagtcc
ggcaagtatgtgatgaagtttgaaccggagcagttgaaaggccaaacggccgcattcgac
attactgacggtaaagaagtgtatgtgaaggccggtaagaaaatcacggcccgtaccatc
aagcagctgcaggaagcgaaagttaaaaccattgtagtgccggacgagttcttggtcggt
aaggtattgtccgccggtattatgaaccaagaaaccggtgaattggttgcgcgtgcgaat
gaagtcatgacggcagacctggtcgaaaacatcaaagcgattaaaggcttgtccttcaag
gttctgttcatcgatgacttggaaaacggtgcctatatttccgatacgctgaacttggat
acaaccacctcacagttggaagcgcagattgaaatctatcgtatgatgcgtccaggtgaa
ccgcctacgaaagaatcttctgaagccttgtttaacagcctgttcttcgatgattcacgt
tatgacttgtcttcagtcgggcgtatgaagttgaaccgtcgtttgggtcgtaaagacaac
gacggtagcctggtgcttgagaatcaagacattgtcgatgtggttaaagagttgttgaac
atccgtaatggtttgagcaccatcgatgatatcgatacgttgggtaaccgtcgtattcgt
gccgttggtgaaatggctgaaaacgctttccgtgttggtttggtgcgtgtggagcgtgcc
gttaaagaacgtttgaaccaagcggaaaccgatggtttgttgcctcaagatcttattaat
gccaagcctgtttcggcggccattaaagagtttttcggttccagccagttgtctcagttt
atggatcaggtgaacccattgtccgaagtcacgcataagcgtcgtgtttcggcattgggg
cctggtggtctgacgcgtgaacgtgccggctttgaggttcgtgacgttcaccctactcac
tatggtcgtgtgtgtccaattgaaacgcctgaagggccaaacatcggtttgatcaacacc
ttggcgatttacgcgaaaaccaacaagtatggtttcttggaaacgccatatcgcaaagtg
gttgacggtcaagtcaccgatgaagtggaatacgtttcagccatcgacgaagcgcaattt
gtcatcgcgcaggccagtgccgcaaccgatgataaaaacaacttgatggatgagttggtt
acggcgagacataagaacgaaaccattttggcgtcatcaaaagacgtggattacatggac
gtttcgccgaagcaaatcgtttcggtcgcggcttcactgattccattcctagagcacgat
gatgcgaaccgtgctttgatgggctcgaacatgcaacgtcaggccgtgccgactttgcgt
gcggataagccattagttggaaccgggattgaaaaaaccgttgcgattgactccggtgtg
actgtgattgcaaaccgtggcggtgaagtggtttctgccgatgcggcgcgtattgtggtg
cgtgcgaatcaggacgaaattgccgtgggtgaaaccggtgtggatatctataatctgatt
aaatatcagcgctccaaccaaaatacctgtatcaatcagaagccgattgtgaaagcgggt
gatacggtttcacgcggtgatgtattggcggatggtccttccaccgatttgggtgagttg
gcgattggtcaaaacatgcgtatcgcattcatgccttggaacgggtataacttcgaggat
tccattctggtttccgaacgagtggttcaggaagatcgttatacgtccattcacatcgaa
gagttgacctgtttagcgcgtgacaccaagcttgggccggaagaagtgacgtcggatatt
ccgaatgttggtgaagccgcactgtctcgtctggatgagtccggtatcgtgtatgtcggt
gctgaagtcaaacaaggcgatatcctggtcggtaaagtgacgccgaaaggcgagacgcag
ttgacgccggaagaaaagcttctgcgtgcgattttcggtgaaaaagcctctgatgttaaa
gatacctctttgcgtgttggtaaaggcgttgaagggacggttatcgacgttcaagtcttc
acacgtgaaggtgtcaagaaagatgcccgtgcaatggcgatccaagaggacgagttgcaa
catgttcgtaaagacatcgatgagcaatataagattcttgaagtcgacactttgagccgt
atcgagcaaatgttggtcggtcaaaagctggttgacggtaaaacggtaactgctgaaatg
ttggcggacttgccaagccagaaatggttcggtctgaacttgaaagatgaagaattggtc
aaccatttggaagcacttgaaaagcaactggtgctgaaaaaagaagaattgaacaatgca
ttcgaagagaaaaagaaaaaactgacgcaaggcgatgatttgcagccgggtgtttccaaa
atggtgaaagtgtacgttgcggttaagcgtcgtattcagccaggggataaaatggccggt
cgtcacgggaacaagggtgttatctcccgaatctgtcctgtggaagatatgccttacgat
gaaaccggtcgtccggtggacatctgcttgaaccctctgggggttccgtcacgtatgaac
gtgggtcagattctggaaactcacctcggtttggctgcggcaggcctgggcgaaaagatc
aatgccatgttggagcagcaagccgacattaaggaattgaaaggtttcttgcataaggtc
tataacgaaacacaaggtcaaagcgtggactttgatagtttgagcgatgctgaaattatt
gagttggccggtaacctgcgtaaaggtgtgccaatggcttcgccagtcttcgatggtgct
tcggaagatcaaattaaagcattgttgcgcttggccgatctgccggagtccggtcagatg
acgttgtttgacggaatttccggacagaagttcgatcgcccggttacggttggttacatg
tattacttgaaactgaaccacttggtcgacgataagatgcatgcgcgttcaaccgggcct
tatagcctggtaactcagcaaccattgggtggtaaagcgcagttcggtgggcagcgtttc
ggtgaaatggaagtatgggcactggaagcctacggtgccgcctttaccttgcaagaaatg
ttgacggtgaaatcggatgacttgaacggccgtaccaaaatgtataagaacattgtcgat
ggtaacgagtatatggaacctggtattccagagtcgtttagcgtattgcgcaaagaaatt
cgcgctttgggtattgatattgagttggagcaagaataa
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