Hymenobacter taeanensis: HMJ29_04050
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Entry
HMJ29_04050 CDS
T08050
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hts
Hymenobacter taeanensis
Pathway
hts03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hts00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMJ29_04050 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hts03021
]
HMJ29_04050 (rpoB)
03400 DNA repair and recombination proteins [BR:
hts03400
]
HMJ29_04050 (rpoB)
Enzymes [BR:
hts01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMJ29_04050 (rpoB)
Transcription machinery [BR:
hts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMJ29_04050 (rpoB)
DNA repair and recombination proteins [BR:
hts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMJ29_04050 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
YtxH
Motif
Other DBs
NCBI-ProteinID:
QJX49163
UniProt:
A0A6M6BNS2
LinkDB
All DBs
Position
complement(942306..946172)
Genome browser
AA seq
1288 aa
AA seq
DB search
MQAADERINFAKIKKVIEYPDFLDVQVRSFMDFFQLETAAENRTDEGLFKVFAENFPISD
SRENFVLTFIDYHVDPPKYSVDECIDRGLTYSVPLKAKLRLVCNDTDNEDFETIEQEVFL
GNIPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIEFA
TDVNNVMYAYIDRKKKFPVTTLLRAIGYGTDKDILDLFGLSEEVKADKKNLKKAVGRKLA
ARVLRTWTEDFVDEDTGEVVSIDRNEVLLERDSTIEEEDIDTILNAGAKSVILHRENVNI
ADYAIIYNTLQKDNSNSEKEAVEQIYRQLRNTEAPDEETARDIIQKLFFSDKRYDLGDVG
RYRINKKLGIDTNWDARVLTNEDIVLIVKYLIGLINSKAIVDDIDHLSNRRVRTVGEQLY
AQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPL
AEVTHKRRVSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHARV
NSMGFIETPYRTVENGKVDTTENVKYLTAEEEDTHHIAQANARIDEEGNFINELVKGRFE
GDFPVVGPDEYSYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAEAPI
VGTGLEGRVAIDSRTLVVAEGDGVIDYVDANRIVVKYDLTEDDILVSFDAEKISYDLIKF
RRTNQDTCINLTPLVKKGERVVKGQPLCEGYGTNKGELALGRNMQVAFMPWQGYNFEDAI
VISEKVVRDDIFTSIHIEEFELEVRETKRGEEELTSEIPNVSEEAVRNLDDNGIIRLGAE
VREGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLNGVVIGTKLFSR
PKKDKNLRAKSKKEVEELKDSYAKELRGIKAVMVEKLVQLLEGKTSQGVKHKFGDEIISK
GVKFGKKNIAENLFPEKNPYKDESNYAVPEEVNMFKDLVLEGWTADARVNSMVLDLVKNY
AKKRNTITARFKRDRFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVAR
IVRDEDMPFLPDGTPMDIVLNPLGVPSRMNIGQIYETVLGWAGLKLGRTYATPIFDGATE
EEVSRELTEAGLPTFGRAYLHDGLTGQRFDQPVTVGVIYMLKLGHLVDDKMHARSIGPYS
LITQQPLGGKAQFGGQRFGEMEVWALEAFGASNVLQEILTVKSDDVVGRAKAYEAIVKGD
VLPKPNIPESFNVLIHELRGLALEITLD
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
ctgcaggcggctgacgagcggatcaacttcgccaagattaaaaaggttattgagtacccg
gatttcctggacgtgcaggttcgctcgttcatggatttcttccagttggaaacggctgcc
gagaaccgtaccgatgagggtctcttcaaagtattcgccgagaactttccgatttcggac
tcgcgcgagaacttcgtgctgacctttattgactaccacgtcgacccgcctaagtactca
gtagatgagtgcatcgaccggggcctgacgtactcggtaccgctgaaagctaagttgcgc
ctggtctgcaatgacacggacaacgaagatttcgagacgatcgagcaggaagtgttcttg
ggtaacatcccttacatgaccgagaagggctcgttcgtaatcaacggtgctgagcgtgtt
attgtatcgcagctgcaccgttcacccggtgtattctttgcgcagagcaagcacaccaac
ggcactaagctgtactcggcccgtattattccgttcaaaggctcgtggattgaatttgcc
acggacgtgaacaatgtgatgtacgcgtacatcgaccggaagaagaagtttccggttact
acgctgcttcgcgccatcggttacggcaccgacaaagatatcttggacctgttcgggcta
tcggaggaagtgaaggccgataagaagaaccttaagaaggcagtaggccgcaagctggcc
gctcgggtgctccgcacctggacggaagacttcgtggatgaggataccggtgaagtggta
tctattgaccggaacgaggtactgctggagcgcgactctactatcgaggaagaggacatt
gacaccatcctgaacgctggtgctaagtcggtaattctgcaccgcgagaatgtaaacatt
gcggactacgcaattatttacaacaccctgcagaaggacaactctaactcggagaaagaa
gccgttgagcaaatctaccgtcagctccgtaacacggaagctcccgacgaagagactgcc
cgcgacatcatccaaaagctattcttctcggataagcgctacgaccttggtgacgtaggc
cgctaccgtattaataagaagctgggtattgacacgaactgggatgcccgcgtgctgacc
aacgaggatatcgttctcatcgtgaaatacctgatcggtctgatcaactcgaaggccatt
gtcgatgacattgaccacttgagcaatcgtcgtgtacgcacggtaggggagcagttgtac
gcccagttcggcgtaggcttagcccgtatggcgcgtactatcaaggagcgcatgaacgtg
cgcgacaacgaggacttcaagccagttgatctgatcaacgctcgtactctgtcgagcgta
atcaactcgttcttcggtacgaaccagctttcgcagtttatggaccagactaaccctctg
gccgaggtgacgcacaagcgtcgtgtatcggcactggggccaggaggtctgtcgcgggag
cgtgctggtttcgaagtacgtgacgttcactacacccactacggccgtctctgcactatc
gaaacgccggaaggaccaaacattggtctgatttcgtcgctttgcgtgcacgcccgagta
aactccatgggcttcatcgaaactccttaccgcactgttgagaacggtaaggtggatacg
acggagaacgtgaagtacctgacggctgaagaggaagatactcaccacatcgcgcaggct
aacgcccgcatcgatgaagagggtaacttcatcaacgagctggtaaaaggtcgtttcgaa
ggtgacttccccgtagtaggtcccgacgagtacagctacatggacgtagctcctaaccag
attgtatcggtagctgcttcgctgattccgtttctggagcatgacgatgctaaccgtgcc
ctgatgggttcgaacatgcaacgtcaggcagtaccgttgctgaaggcggaggcccccatc
gtgggcactggcctagaggggcgcgtagcaattgactcgcgcactctggtagtagccgag
ggcgacggtgtaattgactacgtagatgctaaccgcattgtagtgaagtacgacctgacg
gaagacgatatcctcgtaagcttcgatgctgagaagatttcgtacgacctgatcaagttc
cgtcggaccaaccaggacacctgcatcaacctgacgcctctcgtgaagaagggcgagcgg
gtagtgaaaggacagccactctgcgaaggctacggcacgaacaaaggtgagctggccctg
ggccgcaacatgcaggtggcatttatgccatggcagggctacaacttcgaggatgctatc
gtaatctcggagaaagtagtacgcgacgacatcttcacctcaattcacattgaggagttt
gagttggaagtacgcgagaccaagcgtggcgaagaagagctgacctcggagattccgaac
gtaagcgaagaagccgtgcgtaacctcgacgataacggcatcatccgtctgggtgctgag
gttcgcgagggcgatatcctcatcggtaagatcacgcctaagggcgagaccgatccaacc
ccagaagagaagctactccgcgccatcttcggtgacaaagctggcgacgtgaaggatgcc
tcgcttaaggcgccaccttccctgaatggtgtagttatcggtaccaagctgttctcacgt
cctaagaaagacaaaaacctgcgggccaagtccaagaaggaagtagaagagctgaaggat
tcgtatgctaaggaactgcgcggtatcaaagccgtgatggttgaaaagctggtgcagcta
ctggaaggcaaaacctcccagggtgtgaagcacaagtttggcgacgaaatcatctcgaag
ggtgtgaaatttggcaagaagaacattgctgaaaacctcttccccgagaagaacccctac
aaggacgagagcaactacgctgttcccgaagaggtgaacatgtttaaggacctcgtgctg
gaagggtggactgctgacgctcgcgttaacagcatggtgctggacctggtgaaaaactac
gccaagaagcgtaacaccatcacggctcgcttcaagcgcgaccggttcacgctggaggta
ggtgacgaactccccgctggtatcgtgcagctggccaaagtttacatcgccaagaagcgt
aagctgaaggtgggtgataaaatggcaggtcgtcacggtaacaagggtgtggtagcccgc
atcgtgcgcgatgaggacatgcccttcctgcccgacggtactccgatggacatcgtgctc
aacccgcttggtgtaccaagccggatgaacatcggtcagatctacgagactgtattgggc
tgggctggcttgaagctgggccgtacctacgctaccccaattttcgatggtgctaccgaa
gaggaagtatcgcgtgagttgacggaagcaggcctaccaaccttcggccgtgcttatctg
cacgatggtctgactggtcagcgttttgaccagccggtaaccgttggggtaatttatatg
ctgaagctaggccacttggttgatgacaagatgcacgcccgttcaatcggaccgtactcg
ctcatcactcagcagccgctcggtggtaaagctcagttcggtggtcagcgcttcggcgaa
atggaagtatgggctcttgaggccttcggtgcttccaacgtcctccaagaaattctgacg
gtgaagtcggatgacgtggtaggccgcgctaaagcgtacgaagccattgtaaaaggtgac
gtactgcccaagccgaatatccctgagtcatttaacgtactcatccacgagctacgcggt
ctggctctggaaatcacgcttgactga
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