Vreelandella titanicae: HZS52_03475
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Entry
HZS52_03475 CDS
T06950
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
htt
Vreelandella titanicae
Pathway
htt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
htt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HZS52_03475 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
htt03021
]
HZS52_03475 (rpoB)
03400 DNA repair and recombination proteins [BR:
htt03400
]
HZS52_03475 (rpoB)
Enzymes [BR:
htt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HZS52_03475 (rpoB)
Transcription machinery [BR:
htt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HZS52_03475 (rpoB)
DNA repair and recombination proteins [BR:
htt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HZS52_03475 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QNU63443
UniProt:
A0A7H1VDI1
LinkDB
All DBs
Position
complement(716122..720198)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMNTEEILAEFFETSVFHIEKSG
FYVELVPSRLRGETATFDIKDGEGNVIVEEGRRITQKHIRQLEKAGLERLDVPMEYLFGK
TLAKDQIDSKTGELICPCNTEITPEVLERMAQGGITLVETLYTNDLDCGSFISDTLKLDA
TNSALEALVEIYRMMRPGEPPTKESAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDTDT
GSGVLDRKDILDVLRELISIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DRQLTDDIVHLSAIEEGDFVIAQASAAVDESNKLSDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVANRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
SVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGSEEITSDIPNVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIERTQLDE
VRKDLQETYRIAEDATFERLKRTLDGQAVNGGPNLKKGDVLDEAYLDELPRQQWFKLRMQ
DESYNELLAQADEQLETRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEAMLRDARGQQVAEIRDFLGQIYNTQGTRVEDLDSLTDDEIIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMALFDGRTGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacttgctggcgatccagcttgattcctattacgacttcctccag
caagatcgttcgcccgacgagcgtcacgaggtcggtctgcacgcggcattcaagtccgtg
tttccgattgagagcttctccggcaatgcagcgcttgagtatgtcagctaccgctttggc
acgccggcgttcgatgttaaggagtgccaactgcgcggcgtgacttactccgccccgctg
cgcgtcaaggttcgcttgatcatctatgatcgcgactcctcgaacaaagcaattaaagat
attaaagagcaagaagtctacatgggggaaatccccctgatgactgagaacggtactttt
gttatcaacggtactgagcgggttatcgtctcccagctccaccgctcgcccggtgtgttc
ttcgatcacgacaaaggtaagagccactcttccggcaagctgctctattcagctcgcgtg
attccttatcgtggctcctggttagacttcgagtttgaccccaaggataacgttttcgta
cgtattgaccgtcgccgcaagctgccggcctcggtactgatgcgtgcgctggggatgaac
accgaagaaattctggccgagttctttgaaaccagcgtcttccacattgagaaatccggt
ttctatgttgagctggttccgtcgcgcctgcgcggcgagacagctactttcgacatcaag
gatggcgaaggcaatgtgatcgttgaagaggggcgtcggattacccagaagcatattcgt
cagcttgaaaaagccggccttgagcgtctggacgtgccgatggagtacctgttcggcaaa
acgctggctaaagatcaaatcgactccaaaacaggcgagctgatctgcccgtgtaatacc
gagatcactcccgaggtgcttgagcgcatggcccagggtggcattaccttggtggaaacg
ctctacaccaatgatctcgactgcggttcattcatttccgacaccttgaagctggatgct
actaattccgcgcttgaagcgttagtcgaaatttaccgcatgatgcgtcccggcgaaccg
cccaccaaagagtctgccgagacgctgtttaacaacctgttcttctctgaggaccgctac
gacctgtctggcgttggccgcatgaagttcaaccgtcgcctgcgtcgtgatactgacacg
ggctccggcgtactagatcgcaaagacattcttgatgtgctgcgcgagctgatcagtatc
cgtaacggcttcggtgacgttgacgatatcgatcacctgggtaaccgccgtattcgctgt
gtgggcgagatggcagagaaccagttccgcgtaggcctggtgcgtgtagagcgcgccgtg
aaagagcgtctttccatggcggaaagcgaaggcctgatgccccaagacttgatcaacgcc
aagccggtcgcggcggcggtgaaggagttcttcggttccagccagctttcgcagtttatg
gatcagaacaacccgctttctgaggttacccacaagcgtcgtgtgtcggcactcggcccc
ggtggtttgacccgtgagcgtgctggcttcgaagtacgtgacgttcacgccacgcactac
gggcgtctatgcccgatcgaaacgccagaaggcccgaacatcggtctgattaactcgctg
gccacttacagccacactaacagctacggtttcctcgaaacgccgtaccgtaaagtggtt
gatcgtcagttgaccgacgacatcgttcacctctcggcgatcgaagagggcgatttcgtt
atcgcccaggcatcagcagcggtagatgagtccaacaagttaagtgatgacctggttcag
gttcgtcaccgcggtgaaacgacctttatgcgtcctgaacaagtgacgctaatggacgtg
tcgccacgtcaggttgtatcagtcgcagcggcattgattccgttcctggagcacgatgac
gccaaccgcgccttgatgggttccaacatgcagcgtcaggcggtaccgaccctgcgtgcc
gataagccgctggtaggtacgggcatggagcgctttgttgcccgtgactccggcgtctgt
gcggtggccaatcgcggcggcgtgattgattccgtcgatgcgcgtcgtgtcgtggtacgg
gttaatgaagatgaaatcatcggcggtgaagccggcgttgatatctacaacctgaccaag
tacacccgctcgaaccagaacacctgtatgaaccagcgccccatcgtgcggcctggcgac
agcgtggcacgtggcgatattctcgctgacggcccgtcggtggatatgggcgacctggcg
ctgggccagaacatgcgcatcgcgtttatgccctggaacggttacaacttcgaggactcc
atcctgctttccgagcgggtcgttcaagaagaccgtttcaccacgatccacattcaggaa
ctgacctgtgtgtcccgcgacaccaagttgggctcggaagaaattacctccgatatccct
aacgtgggcgagtctgcgctctccaagctggatgaagcgggcgttgtctacatcggtgcc
gaagtcggcccgggcgatattctggtcggtaaagtaacgccgaagggtgaaacccagctg
acgcctgaagagaagctgctacgtgccatcttcggcgagaaagcgtctgacgttaaagac
acttccctgcgtgcccccaccggcatgaaaggtacggtcatcgacgttcaggtgtttact
cgtgacggcgttgagaaagattcacgcgccctgtcgatcgagcgcactcagcttgacgaa
gttcgtaaggatctccaagagacttaccgtatcgccgaagacgccacttttgagcgtcta
aagcgtacccttgacggtcaggctgttaacggcggcccgaacctcaagaaaggtgacgtg
ctcgacgaggcatacctggatgaattgccgcgtcagcagtggttcaaactgcgcatgcag
gatgagtcctacaacgagctgctggcacaggccgacgaacagctggaaacccgtcgtaaa
gagatggacgagcgctttgaagataagaagcgcaagctgacccagggcgacgatctcgca
ccgggcgtgctaaaaatcgtcaaagtctatatggcggttaagcgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaaaggtgttatctcggcgattatgcccatcgaa
gacatgccgtttgatgaaaagggcgagccggtcgacgtggtgctgaacccgctgggcgta
ccgtcgcgtatgaacgtcggtcagattttggaaacccacctgggtatggcggcacgtggc
ttgggcgtcaagatcgaagccatgctgcgcgacgcacgtggacagcaagtggccgagatc
cgtgatttcctgggtcagatctacaatacgcaaggtacgcgcgttgaagatctcgactcc
ctgacggatgacgagatcatcgccctggcgaagaacctcaaaggtggtgtgcctatggcc
acgccggtgtttgacggtgccaaagagcacgaaatcaagcacctgctgaagctggcggac
atccccgagtcgggtcagatggccctgttcgatggccgtaccggtgatgcttttgaccgt
ccggtcaccgttggctacatgtacatgctgaagcttaaccacttggtagacgacaagatg
catgcgcgttctactggttcttactcgctggttacccagcagcccttgggtggtaaggcg
caattcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagcttacggcgct
gcatacacgctacaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtacaaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactcgtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag
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integrated database retrieval system
