Hordeum vulgare subsp. vulgare (domesticated barley): 123396434
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Entry
123396434 CDS
T11213
Name
(RefSeq) nuclear pore complex protein NUP107 isoform X1
KO
K14301
nuclear pore complex protein Nup107
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123396434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123396434
03036 Chromosome and associated proteins [BR:
hvg03036
]
123396434
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123396434
Chromosome and associated proteins [BR:
hvg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
123396434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
123396434
NCBI-ProteinID:
XP_044947332
LinkDB
All DBs
Position
1H:complement(24251238..24261380)
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AA seq
1078 aa
AA seq
DB search
MEVDPSPSPPPMSTPGYFDPDSSRLREEYRRYRKRLSSSNDSPMLGTSVSRFSEARSLHD
GSSIPRRPNAGLLLEDVKQEAADYSDIDGLNGPKLFGSAKRTSLNGGSGRRAARSALNLV
KLEDDMPREGETTSTTFASLLDSAIQGLMPFPDVILQFERTCRNASESLRYAATGNIRMV
EDKLMQQKAKLLLDEAASWSLLWYLYGKANEELPEGLFMSPTTSHQEACRYVATDLTAQL
CLRIVLWLEGLASESLDLEKKVRGSHVGSYLPSSGVWHRTQRHLKRRNNDSNIVKHVDFD
APTREVAQLLPDDKKQDELLLEDIWTLLRAGRLEEACELCRSAGQSWRAATLCPFGGVDL
FPSLEAMLKNGNARTLQAIELESGIGRQWRLWKWASYCASEKIAEHDGGQYEMAVYALQC
SNLKRTLPICTEWESACWAMAKSWLDVKVDIELSQYQTSRPEEKEFDDEMNGTQLGPENW
PYHVLDQQPRDIAALLQKLHSSDLVHETVSRACREQHRQIEMNLMSGNLAHLLDLLWSWL
SSIEEGQNVSSPIRPRDDSDMIRFGAHIVLVLRYLLSNEMEDEFEEKLVTVGDLIINMYV
RYLFSEGQEELVGVYASQLERDVCIDLFVDMMELRLNSSLHTMYKLFLSAVEYLPFSSGD
ASKACFEEILERVLSRSREIKLHQYNEDFSDVAEQHHLQALQKAMIIQWLCFTPPSSIPG
FEMITGKLLIRALMHSNTLFREFSLISMRRVPDLPVGPHKLLAILAEPLKQKENLFSLED
QEVSDNLEEFEDWHEYYSLDATYRGWLRCEMENYSVPPEMLSAEEKDQAVAAAIQTLELA
FLLLEREERPWLNAIETSPFESSELVFLELHATAILCLPSGECMTPDATSCTALTSALYS
TVSEGDVLHRQLKVEVKVSSKDPCCIEVALRCLATEGDGFGLHEANDGGLLAAIMAAGFK
GELNRFQPGVSMEISRLDAWYSDCHGSVESTAAYIIRGLCRRCCLPETILRSMQASISLS
EAGDSLDHCDKLIELVASSDSGMMHLFSQQQLQEFLIFERECFICKMELEEEQMPADG
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggacccgtcgccgtcccctccgccaatgtcgacgccgggctacttcgacccg
gactcctcccgcctccgcgaggagtaccgccgctacagaaagagactatcttcttcaaat
gactccccaatgttggggacctcagtctccagattctcagaagcaaggtcgttgcatgat
ggaagcagcatacctaggcggcccaatgctggtctactacttgaagacgtcaagcaggag
gctgctgattattctgacattgatggcttgaatggaccgaaactgttcggatcagcaaaa
aggacatcgctgaatggtggttcaggtaggagggcggcaaggtcagcgttgaatctggtc
aagctggaggacgatatgccacgagaaggagaaacaacttctacaacgtttgcatccctt
cttgattcagcgatacaaggattgatgcccttcccagacgtgattttacaatttgagagg
acatgtagaaacgcttcagagtcactaaggtatgccgccacaggaaacattcggatggtg
gaggataaacttatgcagcaaaaagcaaaactattactggatgaagctgcttcatggtcc
cttctttggtacctctatgggaaagcaaatgaagagcttcctgaaggactattcatgtca
ccaactacatcccatcaggaggcttgccgctatgttgcaacggatcttacagcacaattg
tgtctgcggattgtactttggcttgaaggacttgcttctgaaagtcttgatttggagaaa
aaggtgagaggatctcatgttggttcatatctaccaagttctggtgtttggcatcgtaca
cagaggcacctaaagagaaggaataatgattctaatatagtgaagcatgtggatttcgat
gctccaactcgtgaagtagcccaacttcttcctgatgacaagaagcaagatgaattgctt
ttagaagatatctggactctcttaagagctggaagattagaagaggcatgtgaattgtgc
cgatctgctggacagtcatggagagctgccactctttgccccttcggtggcgtagacctg
tttccttccctggaggccatgctcaagaatggaaatgctagaacactacaagcaattgaa
ctggaaagtggtattggacggcagtggcgtctttggaaatgggcatcctattgtgcttca
gagaaaattgctgaacacgatggtggccagtatgagatggctgtatatgctttacagtgc
agtaacttgaagcgtaccttgccaatctgtactgaatgggagtcagcttgctgggcaatg
gctaaatcctggctagatgttaaagtggatatagaattatctcaatatcaaaccagcaga
ccagaagagaaagagtttgatgatgagatgaatgggacccagcttggcccagaaaattgg
ccatatcatgttcttgatcagcaacctcgtgatatagctgcacttctgcagaaactccac
tcaagtgaccttgttcatgaaactgtttctcgagcatgtcgggagcagcatcgacaaatt
gagatgaatctcatgagtggaaatttagctcatcttcttgaccttctatggtcatggttg
tcttccatcgaagagggtcaaaatgtctcaagtccaattaggccccgtgatgattccgac
atgatacgttttggggcacatattgttcttgttttgagataccttctcagcaatgaaatg
gaagatgagtttgaggaaaagctggttactgtcggtgatctcatcatcaacatgtacgtg
aggtacttgttttcagaggggcaggaagagttggttggagtatatgcctctcagcttgaa
cgtgatgtttgcattgatttgtttgtggacatgatggaactaaggttaaatagcagcttg
cataccatgtacaagcttttcctctctgctgtggagtatctgccattctcctctggagat
gcatccaaggcttgttttgaagagatacttgagagggttctttcaaggtctcgagaaata
aaactccatcagtacaatgaagatttttctgatgtcgcggaacagcatcacctgcaagca
cttcagaaggcaatgatcattcagtggctttgcttcacaccaccatcctcaattccaggc
tttgagatgatcacagggaaacttctgatacgggcattgatgcatagcaacacactattc
agagagttttccttaatatcaatgaggagagtccctgacctaccagtaggaccacataag
ttgcttgccatccttgctgaaccattgaaacaaaaggaaaatttattttcgctggaagat
caagaggtttctgataacttagaagagtttgaagattggcacgaatattactccctggat
gcaacataccggggttggcttagatgtgagatggagaattattccgtcccccctgaaatg
ctttcggcagaagaaaaggatcaagctgttgctgcagcgatacaaactctggagttagca
ttcttgttattagaaagggaagagagaccatggttaaatgctatcgagacaagcccattt
gagtcgtcagagcttgttttccttgagttgcatgcaacagcaatactctgtctaccttct
ggggaatgcatgacaccagatgcaacatcatgcacggctctgactagtgcactttattca
actgtcagcgaaggggatgtgctgcatcggcagctgaaggtggaagttaaggtctcgtct
aaagatccttgctgtattgaagttgcgctccgttgcttagcaacagaaggtgatggattt
gggcttcatgaagccaatgatggaggtcttcttgctgcaattatggctgctggctttaaa
ggtgaactcaatcgttttcaacctggagtttcaatggaaatttcacgacttgatgcttgg
tattctgattgtcatggttcggttgaaagtactgctgcttatatcattcgagggctttgc
cgaagatgctgcctgccagaaacaattctacgatccatgcaggcatccatctccctttcc
gaagctggcgattctctagaccattgtgataaacttatcgagttagttgcttcatcagat
tctgggatgatgcacttgttcagccagcagcagttacaggagttcctgatttttgagagg
gagtgcttcatatgtaaaatggagcttgaggaagagcagatgcctgctgatggctaa
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