Hordeum vulgare subsp. vulgare (domesticated barley): 123438675
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Entry
123438675 CDS
T11213
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123438675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123438675
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123438675
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123438675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
123438675
NCBI-ProteinID:
XP_044971730
LinkDB
All DBs
Position
1H:complement(378978997..379000669)
Genome browser
AA seq
2390 aa
AA seq
DB search
MIPFNSAVADEVRSLVQGADDSTGDSIYRELCQLADCSPDGCILLLQVCLDEVLLNAGVA
KNSQSKQDLLSTVFRYCLDKPYFSTCFCEALRTISVSDAFLETLSNELDLSKAERVGIGL
ALSDSENIGLNLKGQRFSIAQIEELCKNSAQSISNDQIHDIVVFLHETDGLYKHMDSFTN
IISLFKVKEMPFHVPVLVQDSNVRSASSHMEMYIGSFDDDFDSLLSEIGKEISMSDIITE
LGYGCTADTAHCKDILSLFEPLDDLGISKLLGAVVTTAAGLGEAHNTYSTFISAFGNSQT
NDSVQSSAWDINVLVDSINEITPRTNWTSVMENLDHEGFSIPDEGAFRLLMSIYSRACKD
PFPLHAICGSLWKNLEGQLSFLKHAVAAPADTFTFKHSSRKLAFPDLANHIQGNQAWYCL
DLLEVLCQLADLGYATLVRPLLDYPLSHCPDVLLLGVSQINTAYNLLQYEVLSCVFPALL
KDTKNTSLMNYLWHLNPSLTLRGFVDAHSDIICLLRTVDICQDLKILSAVLDSTPLAFSI
KLATVSFRNDHSNLEKWMIEKFSAHREAFIEECVKFLKESVVNTTHDVAEGVIQQPQATI
MTICWESCPLFIKVLQSHSGQLLTNQLVDELNRVEAAYESRTQGSLGRDIPTSEGGSDDI
EAQANIYFHQMFSEQISIDAMIQMLARFKESKNKRELAIFNCMISNLFEEYKFFPKYPDT
QLKLAAVLMGSLIKHQLVAHLGLGVALRSVLDALRKSIDSKMFMFGTTALEQFMDRVIEW
PQYCNHILQISHLRGTHAELVSAIELALAKISSSQNEPNIGNLFSVDPHGSGSPSIGNTE
VSDASWQFTNPTPTQLERSPSSFPLQQRYPGFLGERSRGSTNSVQAKNILSTSQPIASTP
GDFSIAPKVNTPPSLQASPHHSATIPVSSQSTNFLRPRNSAPSGTRSPYTTGFGAALNIE
TLVAAAERRDTSVEAPPSEVQDKIFFMINNISTSNLEAKAREFNEVSQDQYYPWFAQYMV
MKRASIEPNFHDLYLKFFDKVNSKTLNKEMVKATYENCKALLQSDLIKSSSEERSLLKNL
GSWLGKLTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCHSSIAYRPPNP
WTMGILSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRTRQLEGNPDFS
NKDVTASQTTVVAEVSSGMIPAKNVVEVQPELTSTSRATSIPNMLNQYAPPLRLPPNSMV
EDDKVALIMPDQVSPSQTPSPLPALFTLSQLMAAIPRADIYFRINEKLSSLGSLQYSKIM
DVALDKAIKEIIGPVIQRSVTIATRTTKELILKDLAMESDDSAVSRAAHLMVGTLAGSLA
HVTSKEPLRVALLSHLRSLIQNLNNNSETTEQIVHILINDNLDLGCALIETVATRKAVEM
IDGEIKQPFSQLRRQKELLGSGYYDAFPYTQGLARVPDALRPKPTGHLCATQQRVYEDFI
AVWHSQSSQNAGATTSATALTTAPGNSSIPRLYSPNLVQPADLVPEESDHGTTQLLSVST
QIGTSDTFAQAGGTTSIASVFHPMSSNDIPVGEPTAGTKDLGSMMPLSPTTAVDRMESVF
AEPLSTDNGLDRYHQVAQKLEALIANDGKDVEIQSVIAEVPDILHRCVRRDEAALLIAQK
VFRSLYENASKSTYVTWLLATLAAICDVCKLIVKEITSWIIHSEEENKFNLDIVTGLIRS
EILNLGDYDVHLAKIIDSGRNKTATEFAISLVQTLITQEPNGVSELCNVVDALSKLAIRP
GSPESLQQLIEIARSHFKNAASFAAMKDDKVLSGRPSIYKEENDSAFADAVSFQDQVAVL
FSDWCHICDHPTLGDSAYSHYIVQLQQHGLLKGDDLTDRFFHTLTELAVTHAVVSEQVIA
PGGMSQQSAQQLQISYFSVDSYSKLVTLMFKYGVDLGPNKGSLLPKILSITTRIIQKDAE
EKKVSFNPRPYFRLFINLLSELSTADLHDGASFQVLTAFANAFHVLQPLRVPAWSFAWLE
LVSHRSFMPKLLLCNSQKGWPFFQRLLGDLFKFMEPYLRNAELGQPIQLLYKGTLRVLLV
LLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISVA
PRIMSDVEGALKAKQMKTQVDEYLKRPEGSSLLTDLKQKLLLPPNEANVAGTRYNVPLIN
SLIVYVGIQAVQQLQHNKANASASAQQMNQSPQVDVFQIETATEVFRNLIVNMDTEGRYL
LLNAIANQLRYPNNHTHYFSFIILYLFAEATQDIVQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNPRYSFWARSFTRCAPEIERLFESVARSCGGKAAEEGVLADGGH
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgatccccttcaattccgccgtcgccgacgaggtccgctccctcgttcagggcgccgac
gactctaccggtgactccatctaccgcgagctctgccagttagctgactgcagtcccgat
ggttgcattttactgcttcaagtttgtttggatgaagtactgctgaatgccggggtggca
aaaaactctcaatcgaaacaagatcttttatccaccgttttcagatattgtctggataaa
ccatacttcagtacctgtttttgtgaagcactgaggactatatctgtcagtgatgctttc
ctcgaaacgttgtcaaatgaacttgatctatcaaaagctgagagggttggtattggactt
gccctgtcagattctgagaatataggcttgaatctgaaaggccaaagattttcaattgct
caaatcgaggagttatgtaaaaattctgcacagtctatatcgaatgaccaaattcatgat
attgttgtgtttcttcacgagaccgatggcctctataagcatatggattcttttactaac
attatctccctattcaaagtcaaagagatgccattccatgtccctgtccttgttcaggac
agcaacgttcggtcagcttcaagccacatggagatgtacatcggtagctttgatgatgat
tttgattcccttttatctgaaattgggaaggagataagcatgtctgacatcattactgaa
ttgggttatggatgtactgctgatactgcacattgtaaagatatattatcactttttgag
cctcttgatgatttgggaatatctaagttgcttggggctgttgttactactgccgctggt
cttggtgaggctcataacacatattcaacattcatttcggcttttggcaatagccaaaca
aatgactcggttcagtcatcggcatgggatatcaatgttctcgtggactcaatcaatgaa
attaccccaagaacaaattggaccagtgtaatggaaaacctggaccatgagggtttcagt
atccctgatgaaggggctttccgtttattgatgtctatatattctcgggcttgcaaggat
ccatttccacttcatgccatctgtgggtcactgtggaagaatttagaagggcaattatca
ttcttgaaacatgcagtggctgccccagcagatacatttacatttaaacattcttccagg
aagctggcatttccagacttggctaatcacatccaaggcaatcaggcttggtactgccta
gaccttttggaggtgttatgccagcttgccgaccttggctatgcaacattagtgcgtccg
ctgctggactacccactcagtcattgtccagacgtcttacttcttggtgttagccaaatc
aatactgcatataatctcctccagtatgaagtattgtcatgtgtattccctgctttattg
aaggacactaaaaataccagtctaatgaactatctctggcatctcaacccttcccttact
ctccgaggatttgttgatgcccattccgatataatttgtcttttgagaactgttgatata
tgtcaagacctaaagatcctatccgctgtccttgattccactcctttagcatttagcatc
aaacttgctactgtttcctttcgaaatgatcatagcaatctagagaaatggatgattgag
aagttcagtgcacacagagaggcttttattgaggaatgtgttaaattcttgaaagaaagt
gtggtcaacacaactcatgatgttgcagagggtgtcatccaacaacctcaagctactatc
atgactatttgctgggaatcatgtcctttatttataaaggttcttcagtctcactctgga
cagctgttgactaaccaactggtggatgaactaaatagagtggaagcagcgtatgaatca
aggactcaaggttctcttggaagggacattcctacttccgagggaggttctgatgacatt
gaagcacaggcaaatatatattttcaccagatgttttctgaacagataagcattgatgct
atgatacaaatgcttgcacgcttcaaagagtctaaaaacaagagggagctagcaattttc
aattgcatgatctcaaacttgttcgaagagtacaagttcttcccgaagtatccagataca
cagcttaagctagctgctgttcttatgggctctctcattaaacatcaacttgtggctcac
ctgggacttggagttgctctacgtagtgttcttgatgccctgcgtaaatctattgattca
aagatgtttatgttcggtacgacagcgctcgagcagtttatggatcgtgtaattgagtgg
ccgcaatactgcaaccatatattgcagatctcacatcttcgtggaacacatgctgaatta
gtctctgcaattgagctggcacttgccaagatatcatcaagtcaaaacgaaccaaatatt
ggcaacttattttctgtggatccgcatggttctggctcaccatctatcggaaacacagag
gtttctgacgcatcatggcagttcaccaatccgactccaacacagcttgaacggtcacct
tcttcttttccattgcaacagaggtacccgggttttcttggggagaggtccagaggttct
acaaacagcgtccaagctaagaacattctatctaccagtcaacctattgcttcaacacct
ggtgatttttctatcgctccgaaggttaacacaccaccatccttacaagcttctcctcat
cattctgccactattccagtgtcttcacaatccactaattttctgaggcctagaaattca
gctccttcaggcactcgatctccgtacactacaggatttggagccgctttaaatattgaa
actcttgttgctgcagcagaacgaagagatacgtcagttgaggcccctccttctgaagtt
caagacaagattttcttcatgatcaacaatatttccacttctaatttggaagctaaggca
agggaatttaatgaggtttctcaggatcagtattatccttggtttgcgcaatacatggtc
atgaaaagggcaagcatcgaaccgaattttcatgacttgtatttgaagttcttcgacaaa
gttaactcaaaaacgttgaataaggaaatggtgaaagctacatatgagaactgcaaggct
ttgttgcagtcggatcttatcaaatcaagttccgaagagcgttcgttgctaaaaaatctg
ggcagttggctaggaaagctcactataggaaggaatcaaacattacgagcgaaggaaatt
gatcccaaaattcttatagttgaggcatatgaaagggggctcatgatcgcagtcattcca
ttcacttcaaagattcttgaaccttgccattcaagtatagcatatcgtcctccaaacccc
tggacaatgggtattcttagcctacttgctgagatctataatctacctaatctcaagatg
aacctgaagtttgacattgaggtcttgtttaagaacctcagtgtggacatgaaagatgta
aaaccatcttctcttcttaaagatcgtactcgccaacttgaaggaaatccggatttttct
aataaagatgtcactgcatctcaaacaacagtcgtagcagaggtttcctctggtatgatc
ccagcaaaaaatgttgttgaagtgcaaccagagttaactagtacctcacgggccactagc
atcccaaatatgttaaaccagtatgcaccacctcttcgtcttcctccaaacagcatggtt
gaagatgataaggttgctttaataatgcccgatcaggtttcaccatctcaaacgccatct
ccattacctgctctgtttactcttagtcagcttatggcagcaatacctcgcgcggatata
tattttagaattaatgaaaagcttagttctcttggctcactgcaatatagcaaaatcatg
gatgttgctttggataaggctattaaagaaattataggccctgttattcaaagaagtgtt
acaatagctacccgaactactaaggagcttattcttaaggatttagcaatggaatctgat
gacagtgcggtatctcgcgctgcacatttgatggttggcacgctagctgggagtctagct
catgtaacttctaaggagcctcttcgtgttgctttgttgtctcatcttcgaagtctcatt
cagaacctgaacaataacagtgaaaccactgagcagattgttcatattctgatcaatgat
aatctagatcttggatgtgcgctaatagagactgttgcaacacgcaaggctgttgagatg
atcgatggagaaatcaagcaacctttttcacagctaaggaggcaaaaggagttgcttggt
tctggatattatgatgcttttccttacactcaaggtcttgcacgtgtcccggatgcactt
cgtccaaagcctactggccatttatgtgctacccaacaacgagtgtatgaggacttcatt
gctgtatggcacagccagagtagtcaaaatgctggagctaccacttctgctacagccttg
accactgccccgggcaattccagtatacctcgactttatagcccaaatttagtacaacca
gcagatctggttcctgaagagtcagatcatggtaccacacaacttctaagtgtttccaca
caaattggtacaagtgacacttttgcccaagccggtggaactactagcattgcatctgtt
ttccaccctatgtcatctaatgacattccagtgggtgaaccaacagctggaactaaagat
cttggctctatgatgcctctttcacctacgactgctgttgaccgtatggaatctgttttc
gctgaacctttgagtactgacaacggattagacagataccatcaagttgcacagaagctt
gaagccttgattgccaatgatggtaaagatgtagaaattcagtctgttattgcagaagtt
cctgatattttacacagatgtgttaggcgggatgaagctgcattattgattgcgcaaaag
gttttcagaagtttgtatgaaaatgcatcaaagagtacttatgtcacatggcttctggca
actttagctgcaatatgcgatgtttgcaaacttattgttaaagagataacaagctggata
attcattctgaggaagaaaataagtttaacctcgacatagttactggactaattcgttct
gagattcttaatcttggggattatgatgttcatctagcaaagatcattgatagtggaaga
aacaagactgcaacagagttcgctatatcacttgtccagacattgattacccaagaaccc
aatggcgtttctgagctttgtaatgttgttgatgcattatcgaagcttgcaatcaggcct
ggttcacctgaatcattgcagcagttgattgagattgcaaggagtcatttcaagaatgct
gctagctttgctgccatgaaggatgacaaggttttatctggtcgtccttcaatatataaa
gaagaaaatgattctgcttttgcagatgctgttagttttcaagaccaggtcgcagtttta
ttctcggactggtgtcacatatgtgatcatccaactttgggtgattcagcatatagtcat
tacattgtgcagttgcaacaacatggcttgctcaagggagatgatttgactgaccgcttc
ttccatactctcacggaacttgcggtcacacatgctgttgtctctgagcaagttatcgct
cctggtgggatgtctcagcagtcggcccaacaactccagatttcatatttctcagttgat
tcatactcaaagcttgtgactttaatgttcaagtatggcgtggatttaggaccaaacaaa
ggcagccttcttccgaagattctctccataacaactaggatcattcagaaagatgctgaa
gaaaagaaagtttctttcaaccctcggccatattttagattatttataaatttgctaagt
gagcttagcactgctgaccttcatgatggtgctagttttcaggttttgactgcatttgca
aatgctttccatgtgcttcaacccttgagagttcctgcatggagttttgcttggcttgaa
ttggtaagccatagaagcttcatgccgaagttattgctgtgcaattcacaaaagggctgg
ccattcttccagaggctgcttggtgatttgttcaaatttatggaaccatatctaagaaac
gctgagctgggacagcccattcagcttttatacaaaggaactttgagagtgctgcttgtt
ctactccatgacttccctgagttcctctgtgactaccacttcagtttctgtgatgtgatt
cccccaagctgcattcaaatgcgtaatgttattcttagtgcttttccacgcaatatgaga
cttcctgacccctctactcctaatctgaagattgacctgctagctgaaatttcagtagct
ccaagaatcatgtctgatgtggaaggtgctttgaaggcaaagcaaatgaagacccaggtt
gacgagtacctcaagagaccagaaggttcgtccttattaactgatttgaagcagaagtta
ttgctgcctccaaatgaagcgaacgttgctgggactcgttataatgttcccttaattaat
tctcttatcgtctatgttggcatccaggctgtgcaacaattgcagcataacaaggcgaat
gcatcagcatcagcgcagcaaatgaaccaaagtcctcaggtggatgtttttcagattgaa
acagccactgaggtcttcagaaatcttatagtgaatatggataccgaaggccgctacctc
ctcctgaacgcgattgctaaccagctacgctatccaaacaatcatactcactacttctcc
ttcatcattttgtacttgtttgctgaggcaacacaggatattgtacaggagcagataaca
agagttcttttagagcgcctaatagttaatcgtcctcatccctggggattacttattact
ttcattgagctcataaagaatccacgctatagcttttgggctcgatcctttacacgctgt
gcgccggagattgagaggctgtttgagtctgttgcaaggtcttgtggaggtaaagcagcg
gaagagggagttcttgctgatggtggccattag
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integrated database retrieval system
