Hordeum vulgare subsp. vulgare (domesticated barley): 123440320
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Entry
123440320 CDS
T11213
Name
(RefSeq) probable pectate lyase 4 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg00040
Pentose and glucuronate interconversions
hvg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123440320
Enzymes [BR:
hvg01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123440320
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
123440320
NCBI-ProteinID:
XP_044972829
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Position
3H:complement(507677718..507679308)
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AA seq
379 aa
AA seq
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MAPKGLLLPVTLLLLLLGAATANLRHENIIDRCWRGEGNWATDRQRLAMCSVGFAGKMRQ
NRGHGVTAYTVTDPSDDPVRPRPGTLRYGATVLPGKVWITFQPGSMHIRLAQPLFVKSFT
AIDGRGADVHVAGGAGIVLYQVSNVVIHGLHVHDVRAQPPGRVVRPGGAVKNLDAGDGDA
IRLLSSSKVWIDHNTLSRCEDGLLDVTLGSTDVTVSNNWFHNHDKVMLLGHDDQHVADRR
MRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNFYDGWKDYAIGGSMGPSVKSQGNLFVAST
PDSAKQVTRRMPVGDAAGKDWHWHSTGDSFENGAVFAQTGSRVPPNYNRHQEFQAASSGE
VRSLTKDAGALRCSAGAAC
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccaagggattactcctgcccgtcaccctcctcctccttctcctcggagctgcc
accgcgaacctccggcacgagaacatcatcgaccgttgctggcgcggcgagggcaactgg
gccaccgaccggcagcggctcgccatgtgctccgtcggcttcgcggggaagatgcggcag
aaccgcggccacggggtgaccgcgtacacggtgaccgacccgagcgacgaccccgtgcgg
ccgaggcccggcacgctgcggtacggcgcgacggtgctgccggggaaggtctggatcacc
ttccagccgggcagcatgcacatccggctggcgcagccgctcttcgtcaagagcttcacg
gcgatcgacggccggggcgccgacgtgcacgtcgccggaggcgccggcatcgtgctctac
caggtgagcaacgtggtcatccacggcctccacgtgcacgacgtgcgcgcgcagcccccg
gggcgggtcgtccggccgggcggcgccgtgaagaacctggacgccggcgacggcgacgcc
atccggctgctgtcgagctccaaggtgtggatcgaccacaacacgctgtcgcggtgcgag
gacggcctcctggacgtgacgctcgggtccaccgacgtgaccgtctccaacaactggttc
cacaaccacgacaaggtgatgctgctgggccacgacgaccagcacgtcgccgaccgccgg
atgcgggtcaccgtggcgttcaaccgcttcggccccaacgtgaaccagcgcatgcccagg
atcaggcacggctacgcccacgtcgtcaacaacttctacgacgggtggaaggactacgcc
attggtggcagcatgggacccagtgtcaagagccagggtaacctgttcgtcgcctccacg
ccggacagcgccaagcaggtgacgagaaggatgccggtgggagatgccgcggggaaggac
tggcactggcactccactggggactcgtttgagaacggcgccgtcttcgcgcagacgggc
agcagggtgccgccgaattacaacaggcatcaggagttccaggcggcgagctccggcgag
gtgagatcgctgaccaaggacgccggtgctctgagatgctccgccggggccgcgtgctga
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