Hordeum vulgare subsp. vulgare (domesticated barley): 123443408
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Entry
123443408 CDS
T11213
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
hvg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123443408
09123 Folding, sorting and degradation
03018 RNA degradation
123443408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123443408
03041 Spliceosome [BR:
hvg03041
]
123443408
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123443408
mRNA degradation factors
5'-3' decay
Lsm complex
123443408
Spliceosome [BR:
hvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123443408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
123443408
NCBI-ProteinID:
XP_044975691
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All DBs
Position
3H:complement(175552959..175558206)
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AA seq
143 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDIGTKPGGRGIGRGQDDG
KGGGRGRGGIGSKGGNKGGRGRG
NT seq
432 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagctcaag
aacggcgagacctacaatgggcacttggtcaactgcgacacgtggatgaacatccacctc
cgggaggttatttgcacctctaaggatggtgataagttttggaggatgccggagtgctat
attcgtggtaacacaatcaagtatcttcgggttcctgatgaggtgattgacaaggttcaa
gaggaaacttctaagagtagatcagataggaagccgccaggtgttggccgcggaagagga
agaggagatataggcactaaacctggaggcagaggcatcgggcgtggccaagatgatggc
aaaggcggtggccgtggaaggggcggaattggaagtaaaggtggcaacaaaggtggacgt
ggccgtgggtga
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