Hordeum vulgare subsp. vulgare (domesticated barley): 123449980
Help
Entry
123449980 CDS
T11213
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123449980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123449980
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123449980
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123449980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
123449980
NCBI-ProteinID:
XP_044983302
UniProt:
A0A8I6Y514
LinkDB
All DBs
Position
4H:603672021..603690212
Genome browser
AA seq
2421 aa
AA seq
DB search
MVPLNHPGVAAEVRLVLQGATDADRDSVSRELCQLVDYGHDGCLLMLQVCLDEVLLNDRE
AKNLQLKHDLLSSTFRYCLDKTYFSTCFCEALMQIKTATDGLLETLSSVLELSAAEKVGI
GLALSDSDNSGMKLKGQQFAIAQIEELCLNPNQSIPNDQIHEIVVFLHQTDGLTKHMDTF
SNIASLLEVGQSPFFAPIPKEQYDAQSINPSRHLEMYLDNTNDDFESLLSEIGKEISMAD
IVIELGYGCTVDSTQCKEILSTFQPLDDVAISKLLGAVIGTQNSLGEAHNTYATFVSAIR
NTHLSESPQLTTWNTDVLVDSINELVPSTNWVHVMENLDHEGFSIPDEAAFCLLMNIYGR
ACKDPFPLHAVCGSMWTNTEGQISFLKHAISAPATIFTFAHSSRLLALPDFASLTPGNHA
WSCLDLLEVLCQLAEVGHTVSVRSMLEFPLGHCPELLLVGLGHINTAYNLLQFEVLSCAF
PALLKDATKRNVLNHLWHINPCLTLRGFVDAHSDPSCLLRIVGVCHDLKILSAVLESTPF
AFSIRLAAAACRKDHSHLEKWLTEKLTVYKDGFVEECVNFLKEAMNATSYEVEGTMEQPQ
ASVVDMYWEACPPVIKVLQSHLGQLLSNQLSDELRELYALYDSRNQGLVRDNPTSEGGSD
DVEVEANAYFHQMFSGQINIDVMIQMLARFKESPDKREQSIFNCMISNLFEEYKFFTKYP
DKQLKLAAVLFGSLIKHQLVAHLGLGIALRAVLDALRKSVDSKMFMFGTTALEQFMDRVI
EWPQYCNHILQISHLRATHAEMVSAIERALARISSSQNEPNSGNFLSTEQLVSGSSSIET
MEASEPSWQLMGTSPTQLGRTPYPLQQRQPSVLGDRSKVSIGTSQTKSILPSQPSVPPAS
ADSAVNLKTTVPPSSLAHSTSMSNTAHSTNFLRPRITSTVLPRQHSYTTGFGNALNIETL
VAAAEQRDSPIETPPSEVQDKILFMINNISTSNMEAKAKEFSEVLQEQYYPWFAQYMVMK
RASIEPNFHDLYLKFFDKLNSRSLSKEMLKATYENCKVLLRSDLIKSSSEERSLLKNLGS
WLGKFTIGRNQTLRAKEIDPKSLIVEAYERGLMIAVIPFTSKILEPCHSSIAYRPPNPWT
MGILSLLAEIYNLPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRGREVEGNPDFSNK
DVASSQTQVSAEVSSGINPTVKHVDLQPEVNSTSRTLSLPPMLNQYTAPVRLPPNSMSED
DKIALMMPEQVPSHTLTQVPPSQTPLVSLSASPSPLSLTQLLSLIPHDEIRFKISSKLLS
LGSQLQFSKIMGVALDKAIKEIILPVIERSVSIASKTTKEIILKDYSTESDYSAANRSAR
LMVGTLAGSLAHVTCKEPLRVALKSHLRSLIQNLTSNSETGDQVIHILINDNLDLGCASI
ESVATRKAVDSIEGEITQSFSQQRKKREAAGPAYYDSFTYAQGPFAPVPEVLHTKAESPA
QQRVYEEFVHVWQSHGQSVGAAGSGSSGTAAVSSNFGVPRAYSPSLAPASSAFLSNQTAP
LALTQPTELVYEELIPGAAPLSSDSPAQVGTSDSSGWLGGTIGDASTSPPLMSNDLPVGG
ITDLNAMMPPPATVSDNLGSALPDPLSTSDAMERYEQVSQKLEVLIAKDGKDVEIQSVIA
EVPDILLKCVNRDEAALAVAQKVFKSLYDNSSNSGYVMCSLATLVAIRDVCNLVVKELMN
WVIYLDDEKKFHSEIIVTLIRSDLLDIREYTIHLAKLIDGGRNKVATEFATSLVQTLITQ
DSASISELYDVLDALSKISRRPGSPDFLQQLTEIARNNANNAPGFAFGKDDRLRQSKDKK
VLPSRANKEENSVNDPIVADSVAFQDQVAHLFSEWCQVCDHPSACDAAYSRYVLQLQHIG
LLKGDEFTERFFRILTELAVAHSLVSEQITAPGGLSPQSSHISYFPIDSYSKLVSAVLKN
CSVEIGPNKGSLLPKILLLTIRIIQKEAEEKKASFNPRPYFRLFINWLNDLITSEPHHDG
TNLQVLTAFANAFHVLQPLRIPSLSFAWLELVSHRTFMARLLKGNSQKGWPFFHRLLIDL
FKFMEPYLRTADLLEPVHLMYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPSSCIQMRNV
ILSAFPRNMRLPDPSTPNLKIDLLAEISVPPRIMSDVDGALKSKHMKTDVDEYLKRPEGS
SFLSDLKQKLLLPQNEANVAGTRYNVPLMNSLVLYIGIQAVQQLQVNKANASAASGQQIN
HSTMDIFQIETATEFFKYLVTNLDTEGRYLFLNAIANQLRYPNSHTHYFSFIILYLFAEA
TQEHIQEQVTRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTHCAPEIKQLFES
VAKSCGGAAGKAVDDGSDGGH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgctcaaccaccccggcgtcgccgccgaggtgcggctggtgctgcagggcgcc
accgacgccgaccgcgactccgtcagccgcgagctctgccagttagttgattatggtcat
gatggatgtcttttgatgctccaagtctgtttggatgaagtgctgttgaatgacagggag
gccaaaaacttgcagttgaagcatgatcttttatcctccactttcagatattgtctggat
aaaacttacttcagcacttgtttctgtgaggcactgatgcagataaaaactgctacagat
ggcctccttgagactctgtcgagtgtactggaactctcagcagccgagaaagtcggtatc
ggtcttgcactgtcagattctgataattcaggcatgaagctgaaagggcaacaatttgca
attgctcaaattgaggagttgtgtttgaatcctaatcaatcgataccaaacgaccaaatt
catgaaattgtcgtcttccttcaccagaccgatggcctgacaaagcatatggatactttt
agtaacattgcttctcttctagaagttggacagagtcctttttttgctcccatccccaag
gagcagtatgatgctcagtcaataaatccttcaagacatttggagatgtacttagataac
acaaatgatgacttcgagtcacttctttctgaaattgggaaagaaataagtatggcggat
atcgtaattgagttgggttatggatgcactgttgacagcacacagtgtaaggaaatacta
tccacttttcagcctcttgatgatgtggcaatatctaagttgctcggggcagttattggc
actcaaaatagtctcggagaggcccataacacttatgcaacctttgtatctgctattcgg
aatacccacttgagtgagtcacctcagttaactacatggaacacggatgttcttgtggat
tcaatcaacgaattggtcccaagtactaattgggtgcatgttatggaaaaccttgatcat
gagggatttagtattcctgatgaagcagctttctgtttactgatgaatatatacggccgt
gcttgcaaggatccctttccacttcatgctgtttgtgggtcaatgtggacaaacacagaa
ggccagatatcatttttaaagcatgcaatctctgcccctgctactatttttacatttgca
catagttcaaggctgctggcacttccggactttgcaagtcttactccaggtaatcatgct
tggtcttgccttgaccttctagaggttttatgccagcttgctgaagttggacacactgtg
tcggtgcgatccatgctcgagtttcctttgggacattgccccgaactcctacttgttggt
cttggacacattaatactgcctataatctcctccaatttgaagtgctatcatgtgctttt
cctgctcttctgaaggatgccacaaagagaaatgtgttgaatcatctctggcatattaac
ccatgcctcactcttcgaggatttgttgatgctcattctgatccaagctgtcttctgaga
attgttggtgtgtgtcacgacctgaagatcctatctgctgtcctcgagtccactccattt
gcatttagcattagattggcggctgctgcttgtaggaaagatcatagccatcttgagaaa
tggctcactgagaagttaactgtatacaaggacggttttgtcgaggaatgcgttaatttt
ttgaaagaagctatgaacgccacttcttatgaggtagagggtaccatggaacaacctcaa
gctagtgttgtggatatgtattgggaggcttgtcctcccgttataaaggttctccagtct
cacttgggacagctcttatccaaccaactctcggatgaactaagggaattgtatgctctg
tatgattcgagaaaccagggtttagtaagggataaccctacctcggagggaggttcagat
gacgttgaagtagaagcaaacgcgtatttccatcagatgttttctggacagataaacatt
gatgtgatgatacaaatgctcgcccgcttcaaagaatcaccagacaagagggagcaatcg
atttttaattgtatgatctcaaatctgtttgaggaatacaagttctttacgaagtatcca
gataagcagcttaaactagctgccgtgctatttggatcccttattaaacatcaacttgtg
gctcaccttggacttgggattgctctacgtgctgttcttgatgccttgcgcaagtctgtt
gattcaaagatgtttatgtttggcacgacagcactggaacagttcatggatcgtgtaata
gagtggccacagtactgcaatcacatattgcagatttcgcatcttcgagctactcatgct
gaaatggtctctgcaattgagcgagcacttgccagaatttcatcaagtcaaaatgagccc
aactctggcaacttcctttctacggagcagcttgtttctggatcgtcatctattgaaacc
atggaggcatctgaaccatcatggcagttaatgggtacatctccaactcagctaggaagg
acaccttatccgttgcagcaaaggcaaccgagtgtccttggggacagatccaaggtctcc
atcggcacctctcagactaagagcattttacctagtcaaccttcagttccgccggcatct
gctgattcagccgttaatctaaagacaactgttccaccctcttcattagctcactctaca
agcatgtcaaatactgctcattccactaattttctgcgccctcgaattacctcgacagtt
ttgccacggcaacattcctacactacaggatttggaaatgctttaaatattgagacgctt
gtagcagcagcggagcaaagagatagtcctattgagactcctccatctgaagttcaggac
aagatcttgtttatgattaacaatatatccacctctaatatggaagccaaggcgaaagaa
tttagtgaagtgcttcaggaacaatattatccatggtttgcccaatacatggtcatgaaa
agggcaagcatcgagccgaattttcatgatttgtacttgaaattctttgacaaacttaac
tcaagatccttgagtaaggagatgctgaaagctacgtatgaaaactgcaaggttttgtta
agatcagatcttatcaaatctagttctgaggaacgctccttgctaaaaaatttgggtagt
tggttgggaaaatttaccatcggaaggaaccagacattaagagctaaggaaattgacccg
aaatctcttattgtggaggcttatgagagaggacttatgattgctgtaattccattcact
tcaaagattctcgaaccttgccattcaagtatagcatatcgtcctccaaatccgtggacg
atgggaattcttagtctacttgctgagatctataatctgccaaacctgaagatgaatcta
aaatttgacattgaggtcctgtttaagaacctcggcgtcgacatgaaagatgtaaaacca
acttcccttcttaaagatcgaggacgtgaagttgagggaaacccagatttttcaaacaaa
gatgttgcttcatctcaaacccaagtgtctgcagaggtctcttcaggcatcaaccccaca
gtaaaacatgtagacctgcaacctgaggtcaatagcacttctcgtaccctcagccttcca
cctatgctaaatcagtatactgctcctgttcgcctccctcctaacagtatgtcggaggat
gataaaattgctctaatgatgcctgagcaagtcccctctcacaccttgacccaggtccca
ccttcacaaacaccattagtatcactatcggcatcgccatcgccactctctctcactcag
cttttgtcgctgattccacatgatgagatacgcttcaaaataagttcaaaacttttatct
cttggctcacagttgcagttcagcaaaatcatgggggtggctctggataaggctatcaaa
gagataatactcccggtcattgaaagaagtgtctcaatagcaagcaaaactacgaaagaa
attattctgaaggattattcaacggaatctgattacagtgccgcaaatcgttctgctcgt
ttgatggttgggacattagctggaagtctagcccatgttacttgcaaggaaccgctccgt
gttgcactaaaatctcatcttcgaagccttattcaaaaccttaccagcaacagtgaaact
ggtgatcaagtaatccatattctgatcaacgacaatttggatcttggttgtgcaagtatc
gagtcggtagctacgcgcaaggctgttgattcgattgagggtgaaataactcaatccttt
tcacaacaaaggaagaaaagagaggcagctggtcctgcatattatgactcttttacttat
gctcaaggtccatttgcccctgtacctgaagtgctccatactaaggcagagtctcctgcc
caacaacgagtatatgaggagtttgttcatgtatggcagagccatggccaaagtgttggt
gctgcaggttctggttcatctggtacagctgctgtctcgagcaattttggcgtacctcgt
gcttacagcccaagtttagctccagcttccagtgctttcttgtctaatcaaacagctcca
cttgcattaactcagcctacagagctggtgtatgaggaattgattcctggcgctgcacca
ctttctagtgattctcctgctcaagttgggaccagtgactcttctggctggcttggtgga
accattggcgatgcatcgacatctcctccattgatgtctaatgaccttcctgtgggagga
ataacggatttaaatgctatgatgccacctccagctacagtttctgacaatctagggtct
gctttaccagatcctttgagcactagtgatgctatggaaagatacgaacaagtttcgcaa
aagctggaagtcttgattgccaaggatggtaaagatgtggaaatccagtctgttattgcg
gaagttcctgatatattactcaaatgtgttaaccgggatgaggctgcattagctgttgca
caaaaggttttcaaaagtttatatgacaactcatcaaatagtggttatgtcatgtgttct
ttagcaactttagttgcgatacgggacgtatgcaaccttgttgtcaaagagctaatgaat
tgggtaatctatttggacgacgagaagaagtttcatagtgaaattatcgttactcttatt
cgttctgatttgctggatatcagggagtacactattcatttagcaaagctaattgacggt
ggaagaaataaggttgcaacagaatttgccacgtcacttgtccagacattgattactcag
gactctgctagtatctcagaactttatgatgttcttgatgcgctatcaaagatttcaagg
aggccaggttcacctgattttttgcaacagttgactgagattgcaaggaataatgccaac
aatgctcctggttttgcttttgggaaggatgacagacttagacaatcgaaggataaaaag
gttctacctagccgagcaaacaaagaggaaaacagtgttaacgaccccattgtagctgat
tctgttgcttttcaagaccaggtcgcacacctattttctgagtggtgtcaagtatgtgat
catccaagtgcttgtgatgcggcgtatagtcgttatgttctgcagttgcaacatattggc
ctgctgaagggagacgaatttactgagcgtttctttcgaattctcacggaacttgctgtt
gcacactctctagtctctgagcaaattactgctcctggtggattgtccccacagtcatca
catatatcatatttccccattgattcatattcgaagcttgtgtctgcggtgctaaagaac
tgttcagtggaaataggaccaaacaaaggcagccttcttcccaagattctgttactgaca
attaggatcatccagaaagaagctgaagagaagaaagcttcatttaacccccgaccatac
tttcgtctgtttataaattggctgaatgaccttattacatctgaacctcatcatgatgga
actaatttgcaggttttgactgcatttgcaaatgcattccatgtactgcaacccctgaga
attcctagtttgagctttgcttggcttgagttggtgagtcatagaaccttcatggcaaga
ctgctgaagggcaattcacaaaaagggtggccttttttccatcggctgcttattgatctg
ttcaaattcatggaaccgtatttgagaactgctgaccttttagaaccagtgcaccttatg
tacaaagggactatgagagtgcttcttgtactactacatgactttcctgaatttctgtgt
gactatcacttcagtttttgtgacgtgatcccttccagttgcattcaaatgcgcaatgtc
attcttagtgcttttccgcgcaacatgagacttccagacccatctactcctaacttgaag
attgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtgcc
ctcaagtcaaagcatatgaagactgatgtcgatgagtatcttaagagaccagaaggctca
tcctttttgagtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgct
gggacacgctacaatgtgcctttgatgaattcacttgttctctacattggcatccaagcg
gtgcaacaactgcaagtgaacaaggctaatgcgtctgctgcgtcaggacagcagattaat
catagtacaatggatatttttcagattgaaacagccactgaatttttcaaatatcttgta
acaaacttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgc
tacccgaatagccacacacactacttctccttcatcatactgtatctatttgccgaagct
acccaggaacatatccaggagcaggtaaccagggttctcttggaacgtctgatagtgaac
cgtcctcacccctggggattactcattaccttcatcgagctgataaagaacccgcgctac
aacttttggaaccgatccttcacacactgcgcgcctgagattaaacagctgtttgagtcg
gtggcaaagtcatgcggtggagccgctggaaaagcagtggatgatggctctgatggcggc
cactaa
DBGET
integrated database retrieval system
