Hordeum vulgare subsp. vulgare (domesticated barley): 123452288
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Entry
123452288 CDS
T11213
Name
(RefSeq) cleavage stimulation factor subunit 50
KO
K14406
cleavage stimulation factor subunit 1
Organism
hvg Hordeum vulgare subsp. vulgare (domesticated barley)
Pathway
hvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123452288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvg03019
]
123452288
Messenger RNA biogenesis [BR:
hvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123452288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
WDR55
EIF3I
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_SCAP
Cytochrom_D1
Ge1_WD40
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
Beta-prop_NOL10_N
Beta-prop_NWD2_C
Beta-prop_WDR41
Beta-prop_IFT122_1st
DUF6117
Motif
Other DBs
NCBI-GeneID:
123452288
NCBI-ProteinID:
XP_044984855
UniProt:
Q9ARL8
LinkDB
All DBs
Position
5H:complement(528857005..528861377)
Genome browser
AA seq
423 aa
AA seq
DB search
MDAAVQEAKLLRQVNALIVAHLRDQNLTQAAAAVAAATMTPKADASLPNHLLRLVAKGLA
AEREEAARGGGAPPAFDSAGGGGLARPLGTSAVDFSVQNVRGPSKTFPKHETRHISDHKN
VARCAKFSPDGKHFATGSGDTSIKFFEVSKIKQTMLGDSKEGPGRPVVRTFYDHVQPIND
LDFHPISPILISAAKDNTIKFFEFSKTAARKAFRVIQDTHNVRSVCFHPCGDYILAGTDH
PVAHLYDVNTFTCFLSANPQDSSAAINQVRYSGTGSMYVTASKDGSLRIWDGVSAECVRP
IIGAHGSVEATSAIFTKDERYILSSGKDSCIKLWEVGTGRLVKQYPGVVNTQFRCQAVFN
ETEEFVLSTDEQNNEVVVWDALTSERVARLPSGHTGAPRWLEHSPVDAVFVTCGNDRSVR
FWK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcggtgcaggaggccaagctgctgcggcaggtgaacgccctcatcgtggcg
cacctccgcgaccagaacctcacgcaggccgccgccgccgtcgccgccgccaccatgacc
cccaaggccgacgcctccctccccaaccacctcctccgcctcgtcgccaagggcctcgcg
gctgagcgggaggaggcggccaggggaggcggagctccccccgcgtttgactccgctggc
ggcggtgggctggcgcgcccgctcggcaccagcgccgtggatttcagtgtgcagaatgtc
aggggcccgtccaagactttccccaagcacgagaccaggcacatctccgatcataagaat
gttgccagatgtgcgaaatttagtcctgatgggaaacattttgcaactggaagtggggac
acatccattaagttctttgaggtatcaaaaattaagcagacgatgttaggagactccaaa
gaaggccctggccgacctgtggtccgtacattttatgaccatgtgcagcccatcaatgat
ctggatttccatcctattagcccaatactgatatctgcagcaaaagataatacgataaag
ttctttgagttctccaaaactgctgcaagaaaagcattcagagttattcaggatactcat
aatgttaggtctgtatgttttcatccttgcggtgattacattttagcagggactgatcac
ccagtagctcatctctatgatgtaaacactttcacatgcttcttatccgcaaatccgcag
gactctagtgctgccatcaaccaggtgcgctactcgggtactgggagcatgtatgtgact
gcttctaaggatggttctctgcgcatctgggatggagtatctgctgaatgtgttcgtccc
ataattggggcacatggatctgtagaagctactagtgcaattttcaccaaagacgagagg
tacatcctatccagtgggaaggattcgtgtataaagttatgggaagttggcaccggaaga
cttgtgaagcaatatccaggtgttgttaatacacaattccggtgtcaggctgtcttcaac
gaaaccgaggagtttgtactatcaaccgacgagcaaaacaacgaggttgtcgtctgggac
gcccttacttctgaaagggtggcaagattgccgtctggccacaccggcgcccctaggtgg
ctggagcactcccctgtagatgcagtgtttgttacatgcggaaacgatcgatccgtcaga
ttctggaaataa
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