Homalodisca vitripennis (glassy-winged sharpshooter): 124360095
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Entry
124360095 CDS
T09217
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
hvi
Homalodisca vitripennis (glassy-winged sharpshooter)
Pathway
hvi03008
Ribosome biogenesis in eukaryotes
hvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124360095
09123 Folding, sorting and degradation
03018 RNA degradation
124360095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvi03019
]
124360095
03009 Ribosome biogenesis [BR:
hvi03009
]
124360095
03016 Transfer RNA biogenesis [BR:
hvi03016
]
124360095
03036 Chromosome and associated proteins [BR:
hvi03036
]
124360095
Messenger RNA biogenesis [BR:
hvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124360095
mRNA degradation factors
5'-3' decay
5' exonucleases
124360095
Ribosome biogenesis [BR:
hvi03009
]
Eukaryotic type
Pre-60S particles
RNases
124360095
Transfer RNA biogenesis [BR:
hvi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124360095
Chromosome and associated proteins [BR:
hvi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124360095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
dsrm
Na_trans_assoc
Motif
Other DBs
NCBI-GeneID:
124360095
NCBI-ProteinID:
XP_046669350
LinkDB
All DBs
Position
4:123855225..123958202
Genome browser
AA seq
1589 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVVREYQLPEFDNLYLDMNGIIHVCSHPNDTDPHFRITEEKI
FRDIFHYIETLFRMIQPQKLFFMAVDGVAPRAKMNQQRGRRFRSAKDAEMAEAKARDKGE
LLPSDDRFDSNCITPGTEFMTRLQAQLKYFVVFKISTDKLWQKVKVILSGHETPGEGEHK
IMDYIRYMKSQPGYDPNTRHCLYGLDADLIMLGLCTHEPHFSLLREEVKYGKKNNQKRIP
TPEETTFFLLHLSLMREYLDLEFQQLKTTLPFSYDLEHIIDDWVLMSFLVGNDFIPHLPD
MHINKGALPILYKTYIDVLPTLGGYINEGGNLRLDRFQKYMEKLASFDFEQFKEISADLR
YLESKTGRKIDGKERHSYKNDEEQMSPPKNKDLAALIASTEEMLEGSEDDDDNYTTVDSD
EEDEGTSFAEFCAHKNNYYIEKLEYDKVTPEVLRSQGEGYVRAIQWNLNYYYNGCCSWSW
FYPHHYAPYISDIKNFSGLKLEYDQGTPFLPFQQLLAVLPAASKKLLPKAYHELMEDDKS
PIIDFYPTEFKTDLNGKRQDWEAVVLIPFIDQESLLQAMETKEHELTDEEKSRNKHGPMQ
VYTYTPENQGSYIAPAYFPALSNHHAHLENVPREKLYVENSKLVKGLCPGARLDIYHCGF
PTLKHIPFKAELRKAKVKVFESASQGDNMILSILPQGHPDVKEVASQLLDKSIYVNWPHM
FEARVVGVASEKVRFCLKKDDDSMIIEEMNKAEQAKWDLTRKAIEERYKNRMGINVGKTE
ILVYACTLEDKKIVMTEEKAQYEKQWSKHAAAYALQTTRTDLEVHEPLPQLNMTLEQLFP
VGTVVFSLEPPSYGAMGTVVEGSKNQRVRVFFTYESEPNTEHMKNSVKRRAPRYMPGNQV
AHNLGLSPHVLSRITGTIYILSENQESDYKLNIGLNLKFNKRNEEVVGYTKRDRVLGNWT
YSHKAEEEVEEYMVVFPEVFEYLDEAKGSEDVRAKDLFPVFTGSRVEELRTFLKERGSAK
AERQSCGTEILDEEVVLALEHYIDKYNSDEKMTRQFKLPVKPSNLYLPKPKLGQPPDPKA
NFNLYDRVINVRECHTVPLGAKGIIIGKHKVDQGPNYMYDILFDKEFTGGLKLRCSPHRG
YRLPGQALINLTHSRMNFNNIKGKPTAVVEPSDPAVEASGSNNNGHNSAFASWRSKLQQD
MDVTVNSSQQSGVDQKSWRQERVIDQFSRNNRQYMPNNPCQHSAPQQLSNEYFAMFKQLQ
KAGNTRGGVGRGSTQNVSDPSNELKKILKIADDPTKKQLPPPPIDNRIPMRVSNAQSYTA
QLFSLQQKMGMTLSKYYYSETQDGSVVCTITCNGKEYRGAPSSSNDTAAESAAAMALQGL
MEEEYWGSHHKRPPPHMAMSSVRHSFPPPNRMPMGHMGEPAKPSTLPQPPVNWCQNPLTS
TDQSFQPEWRMGGQGASRSANPHLYKMPQHPSHMLQHPPQNQHMSQRAGHFNLMPSWQNG
PPPFIPLQAETRFRHQSQHPPPSLPPPRNHPPPQQELPKPTPPPATSQKQTRGMGGPPQG
AINTGRTSARPMRSRIAANFSKPFSPQNN
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccaaagttttttagatacattagcgagcgttatccttgccttagcgaagtt
gtaagagaataccagcttccagaatttgacaacctgtatcttgatatgaatggaataatt
catgtttgttcacaccccaatgacactgatcctcacttcaggatcacagaggaaaagatc
tttcgagacatttttcattatattgaaacactgttcagaatgattcaacctcagaagtta
tttttcatggctgttgatggtgttgcacctcgagccaagatgaatcaacagagaggaaga
agattccgatcagccaaagatgcagagatggcagaagccaaagcgagggacaagggagaa
cttctgccgagcgacgataggttcgattctaactgtatcacaccagggaccgagtttatg
acacgcctacaggcgcagctcaaatactttgttgtcttcaagattagtactgacaagctc
tggcagaaagtcaaagtcatcctctccggtcatgaaacacctggagaaggggagcacaaa
ataatggactacattcgctacatgaaatctcagccgggctatgaccctaacacccgacac
tgtttgtacggtctggatgctgatctcatcatgttgggcctgtgtactcacgagcctcac
ttctctctgctgcgtgaagaggtgaaatatggtaaaaagaacaaccagaagcgaattccc
acaccagaagagacgacattcttcctactccacctgtctctgatgagggagtacctagac
ctagagttccagcagctgaagactactctacctttctcttacgacttggaacacataatt
gatgactgggtccttatgagttttctggtgggcaatgattttatccctcatcttccagac
atgcatattaacaagggtgccctccccatactgtacaagacctacatagacgtccttccc
actctaggaggttacatcaatgaagggggtaacctgcggcttgacaggttccagaagtat
atggagaaattggccagtttcgactttgagcagttcaaagagatcagtgcagatctacga
tacttggagtctaagactggtcgcaagattgatggcaaagaaaggcatagttacaaaaat
gatgaagaacaaatgtcgcctcccaagaacaaagatctagcagctctcatagcatctact
gaagagatgctggaaggatcggaagacgatgatgacaactacacaactgtggacagcgac
gaggaagatgaagggacttcctttgccgagttttgtgctcacaagaacaactattacatt
gaaaaattagagtatgacaaagtcacaccggaagtgctgcgaagtcagggagaaggctac
gtcagggctattcaatggaatcttaattactattacaatgggtgctgctcctggtcgtgg
ttctacccgcaccactacgctccctacatctcggacataaaaaacttctcaggactcaaa
ctcgaatacgatcaaggaacacccttcctgcctttccagcagctgttagctgttttacct
gctgctagcaagaaattgctaccaaaggcttaccatgagttgatggaagatgacaagtcc
cccatcatcgacttttacccgacagagtttaagacagacctcaatggtaaacggcaagat
tgggaggctgtggttcttataccattcattgaccaggagagcttgttgcaagccatggag
acaaaggaacacgagttgacggacgaggagaagtctcgcaacaaacatgggcccatgcag
gtctacacttacactcctgagaatcagggatcatacattgctcctgcctacttccctgca
ttgtccaaccaccatgcccacctggagaatgtgcccagagagaagttatatgtggagaac
agcaagcttgtgaagggtttatgccctggggcgcggctggacatctaccactgtggattc
cccacactcaagcatattcccttcaaggcagaactgcgcaaagccaaggtgaaggtgttt
gagtctgctagccaaggagacaacatgatcttgtcgatcttaccacaaggtcatcccgat
gtcaaagaggtggcttctcagttgctggacaagagcatatatgtcaactggccacatatg
tttgaagccagggtagtaggtgtagcgagtgagaaagtaagattttgcctgaaaaaagat
gatgattctatgataatagaggagatgaacaaggctgagcaagccaagtgggaccttacc
aggaaagccattgaagaaaggtataaaaatcggatggggatcaatgttggcaagactgaa
atcttggtgtatgcatgcacactggaggacaagaagatagtgatgacagaggagaaagct
cagtatgagaaacagtggagtaagcatgctgccgcatatgcactgcagacaactaggaca
gaccttgaggtacatgagccgttgccacagctcaacatgacattagaacagctgtttcct
gtgggcacagttgtgttttctctggagccacccagctatggcgcaatgggcacggtggtg
gagggcagtaagaaccagcgagtgagggtgttctttacttatgagtcagaacccaacact
gaacatatgaagaattcagtgaagaggagagctccccgctatatgccaggtaaccaggtt
gctcacaatctcggcttatctccacacgtactatcccgtatcacaggaacgatttacatc
ctctcagaaaaccaagagtcagattacaaacttaacatcggacttaaccttaaattcaac
aagaggaatgaagaggtggttgggtacaccaagagagatagagttctgggcaactggacg
tactcccacaaggcggaagaggaagtagaagagtacatggttgtgttcccagaagtcttt
gagtaccttgatgaggcgaaaggttcagaggatgttcgtgctaaggatttattccctgta
ttcacggggagcagggtagaagagcttcgtaccttcctgaaagagagagggtcagccaag
gcggagcgacaatcatgtggtactgaaatactggacgaggaggtggtgctggcactggag
cattatatagacaagtacaacagtgacgagaaaatgaccaggcagttcaaactgcccgtc
aagccttctaatctttacttgccgaaaccaaaactgggtcaaccgccagatccgaaagca
aactttaatctgtatgaccgtgttatcaatgtgagagagtgtcataccgtacctcttgga
gccaaagggatcatcattggtaagcacaaggtggatcaaggaccaaattacatgtacgac
atacttttcgacaaagagttcacaggaggtctgaaactgcgttgctcgccccacagaggc
taccgactgcctggacaggctctcatcaacctaacccacagcaggatgaacttcaacaac
atcaagggcaaacccactgctgtcgtggaaccgtcagatcccgcggtagaagccagtggc
tccaacaacaacggacataactcagcatttgcctcttggcgtagcaagcttcagcaagat
atggatgttacagtaaattcgtcacaacagtctggggtggaccagaagtcatggagacag
gagagggtaattgaccagttcagccgaaataaccggcagtatatgccaaacaatccgtgc
caacactccgcacctcaacagctctccaacgaatactttgccatgttcaagcagctccag
aaagctggtaacaccagaggaggagtgggaaggggatctactcagaatgtgtctgatcct
tcaaatgaactgaaaaagatactgaaaatcgcagatgatccaaccaaaaagcagctacct
cctcctcctattgataatcgtattccgatgagagtttccaacgctcagagctacactgcc
caactattctcattgcaacagaaaatgggaatgacactttcaaagtattactactcagaa
actcaagatggttctgtcgtctgcacgatcacctgcaatggcaaggagtatcgaggagca
ccgtcatcgtctaatgatacggcagcggagagtgctgctgcaatggcactgcaaggactg
atggaggaggaatattggggatcccaccacaagagaccacctccacacatggccatgtca
tcagtacgacacagctttcctccaccaaacaggatgcctatgggacacatgggtgagcca
gccaagccctctactctgccacaaccccccgtcaactggtgtcagaaccctctgaccagt
acagaccagagcttccagccagagtggaggatgggaggacagggggcaagcaggtcggcc
aaccctcacttatacaagatgccacagcacccgtcgcacatgctgcagcacccacctcaa
aatcagcacatgtcgcagagagctggacatttcaatctgatgccatcatggcagaatgga
ccgccaccgttcataccattacaggcagagacaaggttccggcaccagagccagcaccca
cctccatcactacccccacctcggaatcacccaccaccacagcaggagttgcccaagccc
actcctcctcccgccacttctcagaagcagactcgtggtatgggaggccctccacaagga
gccattaacactggccgcacatcggcacggccaatgcgatctcgaattgcagccaacttt
tccaaacccttctccccacaaaacaactga
DBGET
integrated database retrieval system
