Halosquirtibacter xylanolyticus: K5X82_17655
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Entry
K5X82_17655 CDS
T10547
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hxy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X82_17655 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hxy03021
]
K5X82_17655 (rpoB)
03400 DNA repair and recombination proteins [BR:
hxy03400
]
K5X82_17655 (rpoB)
Enzymes [BR:
hxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X82_17655 (rpoB)
Transcription machinery [BR:
hxy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X82_17655 (rpoB)
DNA repair and recombination proteins [BR:
hxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X82_17655 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Ubiquitin_5
Motif
Other DBs
NCBI-ProteinID:
QZT37037
LinkDB
All DBs
Position
4809797..4813609
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSQTVNNRISFASAENRFEYPDFLEVQIKSFKEFFQLGASPEERKIEGLNQVFGDNFPI
TDTRNNFVLEFIDYSVDPPRYTLEECIDRGLTYSVPIKAKLKLYCTDEEHEDFDTVVQEV
YLGTIPYMTPSGSFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINGVMFAYIDRKKKLPVTTLLRAIGYESDKDILEIFGLADEIRVSKSGIKKIVGRK
LAARVLKTWVEDFVDEDTGEVVSIERNEVIIDRETVIEPEHLDEILDSGAKTILLHKEEQ
NLADFAIIYNTLQKDPCNSEKEAVLYIYRQLRNSEPPDEATARDVIDKLFFSEVRYDLGE
VGRYRINKKLNLDIDSDTRVLTNQDMIEIIKYLIKLINSKTDIDDIDHLSNRRVRTVGEQ
MYNQFGVGLARMARTIRERMNVRDNEVFTPTDLINSKTLSSVINSFFGTNALSQFMDQTN
PLAEMTHKRRMSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KITDLGFISTPYRPVAEGKVDLDNQDVVYLTAEEEEGKIIAQANATYAEDGSFVNPRVKA
RLDADYPMAEVADVDLMDVGPNQIASIAASLITFLEHDDANRALMGSNMMRQAVPLLCPQ
SPIVGTGLEARVAEDSRVQITAEKDGVIDYVDGSKIVVRYDATENERYVSFNADTESYNV
PKYKKTNQGTCIDLKPIVSPNQRVKKGQILTDGYATQQGELALGRNLKVAFMPWQGYNYE
DAIVISERIVRDDVFTSIHIDEYSLEVRDTKRGLEEFTSDIPNVSEEATRNLDENGLIRI
GAVVKPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDKRL
FSRVQKDKKARTTTKPLLEQIDQEFEVQANRLKDILVDKLFNLVNGKTSQGVEDYFGVDI
ISKGTKFTQKLLSSIDYMTVNGNDWTTDEDKNHMIVSLVRNYIMKYKEFEAVVKRKRYNV
TIGDELPAGIIQLAKVYIAKKRKLQIGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDI
VLNPLGVPSRMNLGQIYETVLGWAGMELGCKFSTPIFDGATLDEISELCDKASVPRFGRT
RLINGETGERFDQPATVGVIYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAYGAANILQEILTVKSDDVIGRAKAYEAIVKGDPMPTPGIPESLNVLLHEL
RGLGLSVDLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcacaaactgtaaataataggatcagttttgcttctgcagaaaatcgttttgaa
tatcctgattttctggaagtacagatcaaatctttcaaagagttcttccagttgggggca
tcgcctgaggaaagaaaaatagagggccttaatcaggtgttcggtgataacttcccaatc
acggatactcgaaataactttgtccttgagtttattgattattcagtcgatccacctcgc
tatactctcgaggagtgtatagatagaggcttgacttatagtgtgccaatcaaggcaaaa
ttaaagttgtattgtactgacgaagagcacgaggacttcgatactgtggttcaggaggta
tacttgggtacaattccatatatgaccccaagtggatcttttgtgatcaatggtgcggag
cgcgtagtggtgtctcagttacaccgttctccaggagtgttctttggtcagagtgtgcat
gcaaatggcacgaaactttattctgctcgaattatcccatttaagggatcatggattgag
tttgcaacagacatcaatggtgttatgtttgcttacatcgatcgtaaaaagaaattacca
gtaacgacattgttacgtgcaatcggctatgaaagcgataaggatatcttagagatattt
ggattggctgatgagattcgcgtatctaagtccggaatcaaaaagattgtaggtagaaaa
ttagctgcacgtgtcttgaagacatgggtagaggattttgtagatgaggatacaggtgaa
gtagtttctatcgagcgtaatgaagtcattatcgaccgtgaaacagttatcgagcctgaa
catttggatgaaattctagattctggtgcgaaaactattcttcttcacaaagaagagcag
aacctagctgattttgcaatcatctataatacactgcagaaagatccatgtaactcggag
aaagaagcagtattatatatctatagacagttacgtaactcagagccgcctgatgaggca
acagctcgtgacgtaattgacaaactatttttctcagaagtacgttatgacttaggagaa
gttggtcgttatagaatcaataaaaaattaaatttggatattgattctgatacgcgtgtt
ttgactaatcaagatatgattgagatcattaagtatcttatcaaattgattaactcgaag
acggatatcgatgatatcgatcacctttctaatagacgtgtacgtactgtaggagagcaa
atgtataaccagtttggcgttggtttagcacgtatggcccgtacaattcgtgagcgaatg
aatgtacgtgacaacgaggtgtttactccaacagatttgattaattcgaagacattgtca
tcggtgatcaactctttcttcggaaccaatgcgttatcacagttcatggatcaaacgaac
ccactagcagagatgactcacaagcgtcgtatgtctgcattgggacctggaggactttca
cgtgatcgtgctggtttcgaggtgcgtgatgttcactacactcactatggtcgtttgtgt
ccaattgaaacaccagagggaccaaacattggtttgatttcttctctttgtgtgtttgca
aagattacagatcttggatttatctcgacaccttaccgtccagttgctgagggtaaagtt
gatttggataatcaagatgttgtgtatctaacagcagaagaagaagaaggtaagattatt
gctcaggcaaatgctacttatgctgaagatggttcgtttgttaatccaagagtgaaggct
cgtttggatgcagattatcctatggcagaggttgctgatgttgatttgatggacgtaggt
cctaaccagattgcatctattgctgcatctttgattactttcttggagcatgatgatgcg
aaccgtgcattgatgggatctaacatgatgcgtcaggctgttccattgttgtgtccacaa
tctccaattgtgggtacaggtcttgaggctcgtgtagctgaagattctcgtgttcagatc
actgctgagaaagatggtgttattgattatgtggatggtagtaaaattgttgttcgttat
gacgctacagaaaatgagcgttatgtaagctttaatgctgatacggaaagctacaacgta
cctaaatataagaagaccaaccaaggtacatgtattgacttgaagccaattgtttctcct
aaccaacgtgttaagaagggacaaatccttactgatggttatgctacgcagcaaggagaa
ttagctttagggcgtaacctaaaagtggccttcatgccatggcagggttataactacgag
gatgcgattgtaatttcagaaagaatcgttcgtgatgatgtatttacatccattcatatc
gatgagtactctcttgaagtgcgtgatacaaagcgtggtttagaggagtttacttcagat
attcctaacgtaagtgaggaagcgacacgtaatcttgatgagaatggtttaattcgtatc
ggtgctgtagttaaacctggtgatatcttgattggtaagattactcctaagggagaatcg
gatccatctccagaggagaaattgcttcgcgcaatcttcggagataaagctggtgatgtg
aaggatgcttcattgaaagcttctccttcattgaaaggtgtagttattgataagagattg
ttttctagagttcaaaaggataagaaagctagaactacaacgaaaccgttgttggagcaa
atcgatcaagagtttgaagttcaagctaatcgtttgaaggatatcttggtggataaacta
tttaacttagttaatggtaaaacttcacaaggtgtagaagattattttggtgtggatatt
atttctaaaggaacgaaattcactcaaaaacttctttcttctatcgactacatgacagtg
aatggtaatgattggactacggatgaagataagaatcatatgattgtttctttggttcgt
aactatatcatgaagtacaaggagtttgaggcagttgttaaacgtaagcgttataatgta
actattggagatgaattgccagctggtattattcaacttgcaaaagtttatatcgcgaag
aagagaaagcttcaaattggtgataagatggcaggacgtcacggtaataagggtattgta
tctcgtatcgtacgtcaagaagatatgcctttcctagaagatggaactccagtggatatt
gtattgaacccacttggtgtaccttcaaggatgaacttaggacagatttatgagactgta
cttggatgggctggtatggagttaggatgtaaattttctacacctattttcgacggagct
actctagatgagatctctgaattgtgtgacaaagcaagtgttcctcgttttggtcgtaca
cgtcttattaacggagagactggagagcgttttgaccagcctgctactgttggtgtgatc
tatatgttgaaattaggtcacatggtagaagacaagatgcacgctcgttctattggacct
tactcgttgattacgcagcagccattaggtggtaaagcacaatttggtggacagcgtttc
ggagagatggaggtttgggctcttgaggcttacggtgcagctaatatccttcaagaaatc
ttgactgttaagtcggatgatgtgattggtagagcgaaagcatacgaggctattgttaaa
ggagatccaatgccaacaccaggaattcctgagtcgttaaacgttcttcttcacgaacta
cgtggactaggattgagtgttgatcttgaataa
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integrated database retrieval system
