Hydrogenobaculum sp. Y04AAS1: HY04AAS1_0258
Help
Entry
HY04AAS1_0258 CDS
T00745
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hya
Hydrogenobaculum sp. Y04AAS1
Pathway
hya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HY04AAS1_0258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hya03021
]
HY04AAS1_0258
03400 DNA repair and recombination proteins [BR:
hya03400
]
HY04AAS1_0258
Enzymes [BR:
hya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HY04AAS1_0258
Transcription machinery [BR:
hya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HY04AAS1_0258
DNA repair and recombination proteins [BR:
hya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HY04AAS1_0258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
TackOD1
Motif
Other DBs
NCBI-ProteinID:
ACG56948
LinkDB
All DBs
Position
227173..231585
Genome browser
AA seq
1470 aa
AA seq
DB search
MLKLKHAIPRKFFGRRSELLDLPFLVKVPTESFENFIQFNVPPTKRKEQGLEYILRTSFP
FQDTNKNITVEYIGYEIGNWECNKCGYKPETDFLAGADTECPKCKTILSYKEKYTPEECK
EKGITYSAPIRIMLRLRKKTKSGEFVDTPKKIYFGEMPMMTPIGTFVINGSERVVVNQLI
RSPGIFYSDKEDRQKEGTVSRTIFTASIHPDKGSRIEFELSTNSDIISARIDKKRISAIS
ILRAFGLETAYDILSQFYEDVKAFNVKDGLIIDKNTGEVYKPEDLESHYLFAVLRYTAKI
EGTEKEEEFIEERYIEDLNVLNRLIKDERVKIELLTAVQSEKTTKSFYGKIILETLINDT
KAKDQHGKSLVRTNSQFTLRDIGLRDIYVKLRSMEGLVQEMADIIQRSRAYFEAYFQDIA
RFDLSKVGRVKINAKIYIHKRELTEKDLEIFDELPVLELAKDYDNYKEGTILTKDIFEYI
LKSHKTIEVRDYTGLEARFLNHKDLVNAIKYLLKVRFGKEKKDDIAHLGNRRVRPIGELL
ENQARIGIARMLKSFRDKVATINPEDPTIKAQDLVNSRYLVSSMFEFLKGGQLSQYLDNS
NPLSSLTHRRRLSALGPGGLTRESAKFEIRDVHPSHYGRLCPIETPEGQNIGLVTSMTTY
AQTNEYGFLVTPYRKVENGIVTDQIEFLAAYEEENFVIAQSTPTDQKGKILGDRLIARYK
NDIQIVKPSDVNYIDVSPRQIISVSASLIPFLEHDDANRALMGSNMQRQAVPLIFTQAPL
IGTGMESKVAIDSGAAILAKRGGVVEEVDSNRIVIRVNPNEINEKDPLDMGIDVYKLLKF
TKTNQNTSVNQRPIVYKGQKIKKGDCIADGQSTFMGELALGKDLLVCFMPWRGYNFEDAI
VISERLVKEDVLTSVHIEELKAEARETKIGDEEITRQVPGVSEKALAYLDEYGIVKVGTY
VKPGDILVGKVTPIGETQLTPEQKLLQAIFGEKTRDVKDSSLRCPPGIEGVVVDVQVFTR
KLSESKKNPLVEHVEQEEKNRIKKEKEFMLNLVIEKRNEIVKDLVIGKVINKPIKLAKKT
YEEGTVIDEALFDNIANFVITKPENFFSDKKLIKKIEEIRDKAQAQRKVIDKIYEEKIEN
VGKQSDLPSGVITMVKVYIAQKRKIRVGDKMAGRHGNKGVISVVLPVEDMPFLPDGTPVD
VVLNPLGVPSRMNVGQILETHLGMASKYIGKKVQEMIDEYFNRDEITEYIASIYAIGDKN
NENKNFIKNMLKSLSDEEFKNVVSFVAQNGIPIATPAFEGCSEDDLKTLLKEAGLPEDGK
FVLYDGRTGEPFDFRVTTGYMHMLKLIHMVEDKIHARSTGPYSLVTQQPLGGRAQFGGQR
LGEMEVWALEAHGAAYTLQEMLTVKSDDIEGRNRAYESIVKGKYFYSPGIPESFKVLVRE
LKSLGLNVVCENGEAKSCDSVDLDKKEEER
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaattaaagcatgctataccaaggaaattttttggtagacgtagtgagctttta
gatttaccatttttagttaaggtccccacagaatctttcgaaaattttattcaatttaac
gtgcccccgaccaaaaggaaggaacagggtcttgagtatatacttagaacttcatttcct
tttcaagataccaataaaaatattactgtggaatatataggatatgagattggaaattgg
gaatgtaacaagtgcggatataaaccggaaacggattttttagctggtgctgatacggaa
tgtccaaaatgtaaaacaattctttcttataaagaaaaatatacgcccgaagaatgtaaa
gaaaaaggaataacctatagtgctcctataaggataatgttaagacttagaaagaagaca
aaatcaggggagtttgtagatacaccaaagaaaatatactttggcgaaatgccaatgatg
acacctataggcacttttgttataaatggaagtgaaagagtcgttgtgaaccagcttata
agatcaccgggtatattctattctgataaggaagataggcaaaaagaaggtactgtatca
agaacaatttttacagctagcatacatccagacaaaggttctcgtatagagtttgaattg
tctactaattcagatataatatctgcaagaatagataaaaagcgtataagtgccatttcg
atattgagggcttttggtttggaaaccgcttacgatatattgtctcagttttatgaagat
gttaaggcttttaatgtgaaagatggtcttataatcgataaaaatactggagaagtatat
aaaccggaggacttggaatctcattatctttttgcggttttaagatataccgccaagata
gaaggcactgagaaagaagaggagtttatagaagaaaggtatattgaagatttaaatgta
ctaaataggttaataaaagacgaaagagtaaagatagagctattgaccgcagtccaatca
gagaaaaccaccaaaagcttttatggaaagataattcttgaaactctcataaacgataca
aaagcaaaggatcagcatggtaagagcttggtaagaaccaattctcaatttactttaaga
gacataggattaagagatatatatgtaaagcttagatctatggaaggtctcgttcaggaa
atggctgatatcatacagcgctctagagcctactttgaagcttacttccaggatatcgca
agatttgatctgtctaaagtaggtagggttaaaataaacgccaaaatctatatacacaaa
agagagcttacagaaaaagacttggaaatttttgatgagcttccggttttagagttggct
aaagattatgataactacaaagaaggcaccatcttaacaaaggatatttttgagtatatc
ttaaaatctcataaaactatagaggtaagggattatactggcttagaagcaaggttctta
aatcataaagatctggtaaatgcaattaaatatttgttaaaggtaaggtttggtaaggaa
aagaaagatgatattgctcacctcggcaacagaagagtaagaccgataggcgagctctta
gaaaaccaagctcgcataggcatagctagaatgttgaaatcctttagggataaagttgct
acgataaacccagaagatcctacgataaaagctcaagacttggtaaactctagatatctt
gtatcttctatgtttgaatttttaaaaggtggtcaactttctcaatatcttgataattca
aaccctttatcttccttaacgcatagaagaagattatctgctttgggacctggtggttta
accagagagagtgctaaatttgaaataagagacgttcatccttctcactacggtagactt
tgccctatagagacccctgaaggtcagaatataggtcttgtgacttctatgaccacttac
gctcaaaccaacgagtacgggttcttggtaactccttataggaaagttgagaacggtatt
gtgacagatcaaatagagtttttagctgcttatgaagaagaaaactttgtaatagcgcaa
agcacccctacagatcaaaaaggtaagatattgggcgataggttaatagctcgttataaa
aatgatattcagattgtaaaaccatccgacgtaaactatatagacgtttctccaaggcaa
ataatatcggtatcggcttctctgattccgtttctagaacatgacgatgcaaatagagct
ttgatgggttccaacatgcaaagacaggcagtacctcttatatttacacaagctcctttg
ataggtacaggaatggaatcaaaagtggctatagatagtggtgctgccattttagccaaa
agaggtggtgtggtagaagaggtagattcaaatcgtattgttataagggtaaatccgaat
gagataaatgaaaaagaccctcttgatatgggtatagatgtttataagcttttaaaattt
acaaaaacaaaccaaaacacatctgtaaatcaaagaccaatagtatataaaggtcaaaag
ataaagaagggcgattgtatagcagatggtcaatctacctttatgggtgagttggctctt
ggaaaagatttgcttgtttgttttatgccgtggcgtggttataactttgaggatgctata
gtaatatcggaaagattggtgaaagaagatgtgcttacttctgttcatatagaagaactt
aaggcagaagccagggaaacaaagataggtgatgaagagataactagacaagtgcctggg
gtatcagaaaaagcgttggcttatcttgatgagtacggtatagttaaggttggtacatat
gtaaaaccaggcgatatattggtgggtaaggttactcccattggagaaactcagttaact
ccagagcaaaaactcttacaagctatctttggtgaaaagactagagatgttaaagactcc
tctctaagatgcccaccgggtattgaaggtgttgtggtagatgtgcaggtgtttaccaga
aagttaagcgaaagcaagaaaaaccctctagtagagcatgtagagcaagaagagaaaaac
cgcataaagaaagagaaagagttcatgcttaacctagttatagaaaagcgtaacgagata
gtaaaagaccttgtcattggtaaggttataaacaaacctataaagttggctaaaaagact
tacgaagagggcactgtaatagatgaagctctttttgacaacatagccaattttgttata
acgaagccagaaaactttttctccgataagaagcttataaagaagatagaagaaataaga
gataaagctcaagctcaacgtaaggttatagataagatatacgaagaaaagatagaaaat
gttggaaaacaaagcgatttaccaagcggtgtgataacgatggtaaaagtctacatagct
caaaagcgtaaaataagggtaggggataaaatggctggtagacacgggaacaaaggtgtt
atatctgtagtgcttccagtcgaagatatgccatttttaccagatggtactcccgtagac
gtagtgttgaaccctcttggtgtgccatctcgtatgaacgttggtcaaattttggaaacg
catcttggaatggcttcaaaatacataggtaagaaagttcaagagatgatagacgaatat
tttaatagagacgaaataacggagtatatagctagtatttacgccataggtgataagaac
aacgagaataaaaatttcatcaagaacatgctaaaaagcttatccgatgaagagtttaaa
aacgttgtgagttttgttgctcaaaacggcattcctatagctactccagcttttgaaggt
tgtagcgaagatgacttgaaaacgctactcaaagaagctggtttgccagaggatggtaaa
tttgtgttgtacgacggtaggactggtgagccttttgattttagagttaccacaggttat
atgcatatgttgaagttgatacatatggtagaagataagatacatgctcgttccactggt
ccttactctttagtaacgcagcagcctcttggaggtagggctcaatttggtggtcaacgt
ttgggtgaaatggaagtgtgggcgttggaggctcacggtgcagcttatacgttacaagag
atgctaacggtgaaatccgatgatatagaaggtagaaatagagcttatgaatctatagta
aaaggtaaatatttctactcacctggtataccagaatctttcaaagttttagtaagagaa
ttgaaatcgttgggactaaacgttgtgtgtgagaatggagaggctaaaagctgcgatagt
gttgatttggataagaaagaggaggaacgttga
DBGET
integrated database retrieval system
