Hydrogenophaga sp. PBC: Q5W_05170
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Entry
Q5W_05170 CDS
T04491
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03030
DNA replication
hyb03410
Base excision repair
hyb03420
Nucleotide excision repair
hyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q5W_05170
03410 Base excision repair
Q5W_05170
03420 Nucleotide excision repair
Q5W_05170
03440 Homologous recombination
Q5W_05170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyb03032
]
Q5W_05170
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_05170
Enzymes [BR:
hyb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q5W_05170
DNA replication proteins [BR:
hyb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q5W_05170
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Q5W_05170
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q5W_05170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AOS78397
LinkDB
All DBs
Position
1044321..1047110
Genome browser
AA seq
929 aa
AA seq
DB search
MTQDAARTLLLIDGSSYLYRAYHAMPDLRAVPGDPNSPATGAIRGMINMMQSLRKEVPAV
FAACIFDASGPTFRDALYTEYKANRSPMPDDLRAQIPPIHEVVRLLGFPVIDVPGVEADD
VIGTLARAAAEQGFDVIVSSGDKDLAQLVNERIAIIDTMSGKRRDMAGVQAEFGVPANLM
IDYQTLVGDTVDNVPGVDKVGPKTAAKWLLEYGSLDALVARAGEVKGVAGENLRKALDWL
PTGRQLVTIKTDCDLNGFVPGLPALDAGRMKEPDNEALQGFYEKYGFKTLAAKASVGKEA
PVAPNATAVEPGLTEGLFDEAAAPAEPRPALKYDTILSWDLFDTWLERLHAAELVALDTE
TTSLDEMVAEIVGISFSVTPGEAAYVPLRHTGPDAPEQLPFDEVLAKLKPWLEDPTKPKL
GQHVKYDRHVFANHGIEVRGYEHDTMLQSYVLEVHKPHGLESLAERHTGRKGISYEDICG
KGAHQIPFAQVDVAKAAEYSCEDSDQTLDVHRVLWPRLQADEKLRFIYELEMASSETLYR
IERNGVLIDAPTLSTQSHELGQRIVALEQEAYAIAGQPFNLGSPKQLGEIFFDKLGLPVI
KKTATGARSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLAQMANPRTGRVHTHY
AQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISG
DEALLRAFHEGQDVHRATAAEVFGVEVAQVSSEQRRYAKVINFGLIYGMSAFGLAKALGI
DNTAAKNYIQRYFERFVGVKRYMEQTVESAQSKGYVETVFGRRLYLSEIRGGNGPRKKAA
ERQAINAPMQGTAADLIKMSMVAVQAALDDQERRTKMIMQVHDELVFEVPEAEVEWVRSE
VPRLMAAVAELKVPLLAEIGVGPNWDKAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggacgccgcccgaaccctgctgctgatcgacggatccagctacctgtaccgc
gcctaccacgccatgcccgatctgcgggccgtgcccggcgacccgaacagccccgccacc
ggggccatccgcgggatgatcaacatgatgcagagcctgcgcaaggaggtgcccgcggtg
ttcgcggcctgcatcttcgacgcctcgggcccgaccttccgcgacgccctctacaccgag
tacaaggccaaccgcagccccatgccggacgacctgcgcgcgcagatcccgcccatccac
gaggtggtgcgcctgctgggcttcccggtgatcgacgtgcccggcgtggaggccgatgac
gtgatcggcacgctcgcgcgcgcggcggccgagcagggcttcgacgtgatcgtcagcagc
ggtgacaaggacctggcccagctcgtcaacgagcgcatcgccatcatcgacaccatgagc
ggcaagcgccgcgacatggctggcgtgcaggccgagttcggggtgccggcgaacctgatg
atcgactaccagacgctggtgggcgacacggtggacaacgtgccgggcgtcgacaaggtg
ggcccgaagacggcggccaagtggctgctggagtacggctcgctcgacgccctggtggcg
cgcgcgggcgaggtcaagggcgtggccggcgagaacctgcgcaaggcgctggactggctg
cccacgggccgccagctcgtcaccatcaagaccgactgcgacctcaacggcttcgtgccc
ggcctgcccgcgttggacgcggggcgcatgaaagagcccgacaacgaagccctgcagggc
ttctacgaaaagtacggcttcaagacgcttgcggccaaggcgtcggtaggcaaggaggcg
cccgtggcgccgaacgccaccgcggtggagcccggcctgaccgagggcctgttcgacgaa
gcggcagcgccggccgagccgcgcccggcgttgaagtacgacaccatcctcagctgggac
ctgttcgacacctggctcgaacgcttgcacgccgccgaactggtggcgctggacaccgag
accacctcgctcgacgagatggtcgccgagatcgtgggcatctccttcagcgtgacgccg
ggcgaggccgcctacgtgccgctgcgtcacacgggccccgacgcgcccgagcaattgccc
ttcgacgaggtgctggcgaagctcaagccctggctggaagacccgacgaagcccaagctg
ggccagcacgtcaagtacgaccgccacgttttcgccaaccatggcatcgaggtgcgcggc
tacgagcacgacaccatgctgcagagctacgtgctggaagtgcacaagccgcatgggctg
gaaagcctggccgagcgccacaccggccgcaagggcatcagctacgaggacatctgcggc
aagggcgcgcaccagattcctttcgcgcaggtggatgtggccaaggccgccgagtactcc
tgcgaggacagcgaccagacgctcgacgtgcaccgcgtgctctggccgcgcctgcaggcc
gacgagaagctgcgcttcatctacgagctggaaatggccagcagcgagacgctttaccgc
atcgagcgcaacggcgtgctgatcgacgcgcccacgctgtcgacacagagccacgaactg
ggtcagcgcatcgttgcgctggagcaggaggcctacgccatcgctggccagcccttcaac
ctgggcagccccaagcagctcggcgaaatcttcttcgacaagctcggcctgcccgtcatc
aagaagaccgccaccggcgcgcgcagcaccgacgaggaggtgctggagaagctggccgag
gactatccgctgccggccaagatcctggagcaccgtggcctgtccaagctcaagggcacc
tacaccgacaagctggcgcagatggccaacccgcgcaccggccgcgtgcacacgcactac
gcgcaagcggtggccgtcacgggtcgcctgtccagcaacgacccgaacctgcagaacatc
cccatccgcacgcccgagggccggcgcgtgcgcgaggccttcgtggcgccggcgggcagc
gtcatcgccagcgccgactactcgcagatcgagctgcgcatcatggcccacatcagcggc
gacgaggccctgctgcgcgccttccacgagggccaggacgtgcaccgcgccaccgcggcc
gaggtgttcggcgtggaggtggcgcaggtcagcagcgagcagcgccgctatgccaaggtg
atcaacttcggccttatctacggcatgagcgcgttcgggttggccaaagcgctgggcatc
gacaacacggcagcgaagaactacatccagcgctacttcgagcgcttcgtgggcgtcaag
cgctacatggagcagacggtggagtccgcgcagagcaaggggtacgtggaaaccgtgttc
gggcgccgcctgtacctgtcggagatcagaggcggcaacggcccacgcaagaaggcggcc
gagcggcaggccatcaacgcccccatgcagggcacggcggccgacctcatcaagatgagc
atggtggccgtgcaggccgcgctcgacgaccaggagcgccgcaccaagatgatcatgcag
gtgcacgacgaactggtgttcgaggtgcccgaggccgaggtggagtgggtgcgcagcgag
gtgccgcgcctcatggccgccgtggccgagctcaaggtgccgctgctggccgagatcggc
gtcgggccgaactgggacaaggcccactga
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