KEGG   Hydrogenophaga sp. PBC: Q5W_05170
Entry
Q5W_05170         CDS       T04491                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
hyb  Hydrogenophaga sp. PBC
Pathway
hyb03030  DNA replication
hyb03410  Base excision repair
hyb03420  Nucleotide excision repair
hyb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Q5W_05170
   03410 Base excision repair
    Q5W_05170
   03420 Nucleotide excision repair
    Q5W_05170
   03440 Homologous recombination
    Q5W_05170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hyb03032]
    Q5W_05170
   03400 DNA repair and recombination proteins [BR:hyb03400]
    Q5W_05170
Enzymes [BR:hyb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Q5W_05170
DNA replication proteins [BR:hyb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Q5W_05170
DNA repair and recombination proteins [BR:hyb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Q5W_05170
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Q5W_05170
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc
Other DBs
NCBI-ProteinID: AOS78397
LinkDB
Position
1044321..1047110
AA seq 929 aa
MTQDAARTLLLIDGSSYLYRAYHAMPDLRAVPGDPNSPATGAIRGMINMMQSLRKEVPAV
FAACIFDASGPTFRDALYTEYKANRSPMPDDLRAQIPPIHEVVRLLGFPVIDVPGVEADD
VIGTLARAAAEQGFDVIVSSGDKDLAQLVNERIAIIDTMSGKRRDMAGVQAEFGVPANLM
IDYQTLVGDTVDNVPGVDKVGPKTAAKWLLEYGSLDALVARAGEVKGVAGENLRKALDWL
PTGRQLVTIKTDCDLNGFVPGLPALDAGRMKEPDNEALQGFYEKYGFKTLAAKASVGKEA
PVAPNATAVEPGLTEGLFDEAAAPAEPRPALKYDTILSWDLFDTWLERLHAAELVALDTE
TTSLDEMVAEIVGISFSVTPGEAAYVPLRHTGPDAPEQLPFDEVLAKLKPWLEDPTKPKL
GQHVKYDRHVFANHGIEVRGYEHDTMLQSYVLEVHKPHGLESLAERHTGRKGISYEDICG
KGAHQIPFAQVDVAKAAEYSCEDSDQTLDVHRVLWPRLQADEKLRFIYELEMASSETLYR
IERNGVLIDAPTLSTQSHELGQRIVALEQEAYAIAGQPFNLGSPKQLGEIFFDKLGLPVI
KKTATGARSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLAQMANPRTGRVHTHY
AQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISG
DEALLRAFHEGQDVHRATAAEVFGVEVAQVSSEQRRYAKVINFGLIYGMSAFGLAKALGI
DNTAAKNYIQRYFERFVGVKRYMEQTVESAQSKGYVETVFGRRLYLSEIRGGNGPRKKAA
ERQAINAPMQGTAADLIKMSMVAVQAALDDQERRTKMIMQVHDELVFEVPEAEVEWVRSE
VPRLMAAVAELKVPLLAEIGVGPNWDKAH
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgacccaggacgccgcccgaaccctgctgctgatcgacggatccagctacctgtaccgc
gcctaccacgccatgcccgatctgcgggccgtgcccggcgacccgaacagccccgccacc
ggggccatccgcgggatgatcaacatgatgcagagcctgcgcaaggaggtgcccgcggtg
ttcgcggcctgcatcttcgacgcctcgggcccgaccttccgcgacgccctctacaccgag
tacaaggccaaccgcagccccatgccggacgacctgcgcgcgcagatcccgcccatccac
gaggtggtgcgcctgctgggcttcccggtgatcgacgtgcccggcgtggaggccgatgac
gtgatcggcacgctcgcgcgcgcggcggccgagcagggcttcgacgtgatcgtcagcagc
ggtgacaaggacctggcccagctcgtcaacgagcgcatcgccatcatcgacaccatgagc
ggcaagcgccgcgacatggctggcgtgcaggccgagttcggggtgccggcgaacctgatg
atcgactaccagacgctggtgggcgacacggtggacaacgtgccgggcgtcgacaaggtg
ggcccgaagacggcggccaagtggctgctggagtacggctcgctcgacgccctggtggcg
cgcgcgggcgaggtcaagggcgtggccggcgagaacctgcgcaaggcgctggactggctg
cccacgggccgccagctcgtcaccatcaagaccgactgcgacctcaacggcttcgtgccc
ggcctgcccgcgttggacgcggggcgcatgaaagagcccgacaacgaagccctgcagggc
ttctacgaaaagtacggcttcaagacgcttgcggccaaggcgtcggtaggcaaggaggcg
cccgtggcgccgaacgccaccgcggtggagcccggcctgaccgagggcctgttcgacgaa
gcggcagcgccggccgagccgcgcccggcgttgaagtacgacaccatcctcagctgggac
ctgttcgacacctggctcgaacgcttgcacgccgccgaactggtggcgctggacaccgag
accacctcgctcgacgagatggtcgccgagatcgtgggcatctccttcagcgtgacgccg
ggcgaggccgcctacgtgccgctgcgtcacacgggccccgacgcgcccgagcaattgccc
ttcgacgaggtgctggcgaagctcaagccctggctggaagacccgacgaagcccaagctg
ggccagcacgtcaagtacgaccgccacgttttcgccaaccatggcatcgaggtgcgcggc
tacgagcacgacaccatgctgcagagctacgtgctggaagtgcacaagccgcatgggctg
gaaagcctggccgagcgccacaccggccgcaagggcatcagctacgaggacatctgcggc
aagggcgcgcaccagattcctttcgcgcaggtggatgtggccaaggccgccgagtactcc
tgcgaggacagcgaccagacgctcgacgtgcaccgcgtgctctggccgcgcctgcaggcc
gacgagaagctgcgcttcatctacgagctggaaatggccagcagcgagacgctttaccgc
atcgagcgcaacggcgtgctgatcgacgcgcccacgctgtcgacacagagccacgaactg
ggtcagcgcatcgttgcgctggagcaggaggcctacgccatcgctggccagcccttcaac
ctgggcagccccaagcagctcggcgaaatcttcttcgacaagctcggcctgcccgtcatc
aagaagaccgccaccggcgcgcgcagcaccgacgaggaggtgctggagaagctggccgag
gactatccgctgccggccaagatcctggagcaccgtggcctgtccaagctcaagggcacc
tacaccgacaagctggcgcagatggccaacccgcgcaccggccgcgtgcacacgcactac
gcgcaagcggtggccgtcacgggtcgcctgtccagcaacgacccgaacctgcagaacatc
cccatccgcacgcccgagggccggcgcgtgcgcgaggccttcgtggcgccggcgggcagc
gtcatcgccagcgccgactactcgcagatcgagctgcgcatcatggcccacatcagcggc
gacgaggccctgctgcgcgccttccacgagggccaggacgtgcaccgcgccaccgcggcc
gaggtgttcggcgtggaggtggcgcaggtcagcagcgagcagcgccgctatgccaaggtg
atcaacttcggccttatctacggcatgagcgcgttcgggttggccaaagcgctgggcatc
gacaacacggcagcgaagaactacatccagcgctacttcgagcgcttcgtgggcgtcaag
cgctacatggagcagacggtggagtccgcgcagagcaaggggtacgtggaaaccgtgttc
gggcgccgcctgtacctgtcggagatcagaggcggcaacggcccacgcaagaaggcggcc
gagcggcaggccatcaacgcccccatgcagggcacggcggccgacctcatcaagatgagc
atggtggccgtgcaggccgcgctcgacgaccaggagcgccgcaccaagatgatcatgcag
gtgcacgacgaactggtgttcgaggtgcccgaggccgaggtggagtgggtgcgcagcgag
gtgccgcgcctcatggccgccgtggccgagctcaaggtgccgctgctggccgagatcggc
gtcgggccgaactgggacaaggcccactga

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