Hydrogenophaga sp. SNF1: SOM08_01825
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Entry
SOM08_01825 CDS
T10669
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hydr Hydrogenophaga sp. SNF1
Pathway
hydr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hydr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOM08_01825 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hydr03021
]
SOM08_01825 (rpoB)
03400 DNA repair and recombination proteins [BR:
hydr03400
]
SOM08_01825 (rpoB)
Enzymes [BR:
hydr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOM08_01825 (rpoB)
Transcription machinery [BR:
hydr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOM08_01825 (rpoB)
DNA repair and recombination proteins [BR:
hydr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOM08_01825 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
DUF5887
Motif
Other DBs
NCBI-ProteinID:
WQB84079
LinkDB
All DBs
Position
365697..369815
Genome browser
AA seq
1372 aa
AA seq
DB search
MASKYSYTERKRIRKSFGTRENVLAIPYLLQMQKDAYTAFLQADVIPKQRTTEGLQAAFT
AAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTPQS
KVVKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLL
FSARIIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGLTPETILANFFVNDHFR
IMDSGAQMAFVPERLRGEVARFDITDKSGKVVVAKDKRITARHTRELEQSGTTHVSVPED
FLIGRVVAKNIVDPDSGEIIAKANEEITEALLKKLRAAAIQELACIYTNELDQGAYISQT
LRIDETADEFAARVAIYRMMRPGEPPTEDAVQALFHRLFYNPDTYDLSRVGRMKFNARVG
RDEATGPMVLSNDDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLAR
IEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRV
SALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETP
YRRVVDGQVTNQIDYLSAIEEGKYVIAQANAALDKDGRLVGELVSAREKGESILTGPDTI
QYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPFVGTGIERVAAV
DSGTVVTATRGGVVDYVDATRIVIRVNDEEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPI
VKKGDKLAKGDVIADGASTDLGEISIGQNMLIAFMPWNGYNFEDSILISERVVADDRYTS
IHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVLPGDVLVGKVTPK
GETTLTPEEKLLRAIFGEKASDVKDTSLRVEQGSQGTVIDVQVFTREGIQRDKRAQQIID
DELKRFRLDLNDQLRIVEADAFDRIEKLLVGKVANGGPKKLAKGTTIDKAYLADVEKYHW
FDIRPADDNVAAQLESIKNSMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVK
RRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHL
GWAAKGLGQRIGDMLQREAKVAEVRQTLESIFNTMGKKEDFAGLSDAEVIEMAQNLQHGV
PFASPVFDGASEDEIRAMLKLAYPDDIAAIKGLTETRTQAQLYDGRTGDAFERKTTVGYM
HFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQEM
LTVKSDDVQGRTKVYESIVKGEHTIDAGMPESFNVLVKEIRSLGIDIELERS
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaagtactcatacaccgaacgcaagcgcatccgaaagagtttcggcacgcgc
gagaacgtgctcgccatcccttatctgctgcagatgcagaaggatgcctacaccgccttc
ctgcaggcggacgtgatccccaagcagcgcaccaccgaaggccttcaggccgcattcacc
gccgccttcccgatcgtctcgcacaacggttttgtcgagatgaagttcgtggaatacaac
ctggccaagcccgcgttcgacgtgcgtgagtgccagacgcgcggcctgaccttcgcgtcc
gccgtgcgcgcccgcgtgcagctcatcatctacgaccgcgagtcctccacgccgcagtcc
aaggtggtcaaggaagtgaaggagcaagaggtctacatgggcgaagtgccgctcatgacc
gacaagggctccttcatcatcaacggcacggagcgcgtgatcgtctcgcagctgcaccgc
tcgccgggtgtcttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctg
ttctcggcccgcatcattccctaccgcggctcctggctggacttcgaattcgatccgaag
gacgtgctgttcttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctcaag
gccatcggcctgacgccggaaaccatcctggcgaacttcttcgtcaacgaccacttccgc
atcatggacagcggcgcgcagatggccttcgtgcccgagcgcctgcgcggcgaagtggcg
cgcttcgacatcaccgacaagtcgggcaaggtggtggtggccaaggacaagcgcatcacc
gcgcgccacacgcgcgagctggagcagtcgggcaccacgcacgtgagcgtgccggaggac
ttcctcatcggccgcgtggtggccaagaacatcgttgacccggacagcggcgagatcatc
gccaaggccaacgaggaaatcaccgaagccctgctcaagaagctgcgcgccgccgccatc
caggaactggcctgcatctacaccaacgagctggaccagggcgcctacatcagccagacc
ctgcgcatcgacgagaccgccgacgagttcgccgcgcgcgtggccatctaccgcatgatg
cgccccggcgagccgccgaccgaggacgcggtgcaggccctgttccaccgcctgttctac
aacccggacacctacgacctctcgcgcgtgggccgcatgaagttcaacgcccgcgtgggc
cgcgacgaggccaccggccccatggtgctgtccaacgacgacatcctggccgtggtcaag
atcctcgtggacctgcgcaacggccgtggcgaagtcgacgacatcgaccacctgggcaac
cgccgcgtgcgctgcgtcggcgaactggctgagaaccagtaccgcaccggcctcgcccgc
atcgagaaggccgtgaaagagcgtctgggtcaggccgagcaagagccgctgatgccgcac
gacctgatcaactccaagccgatctccgcggcgctcaaggagttcttcggtgcctcgcag
ctgtcgcagttcatggaccagaccaacccgctggccgagatcacgcacaagcgccgcgtt
tcggccctgggcccgggcggtctgacgcgcgagcgcgccggcttcgaggtgcgcgacgtg
cacgtcacgcactacggccgcgtctgcccgatcgaaacgcctgaaggtccgaacatcggc
ctgatcaactcgctggccctgtacgcccgcctcaacgaatacggcttcatcgagacgccg
taccgccgcgtggtggacggccaggtcacgaaccagatcgactacctgtcggccatcgag
gaaggcaagtacgtcatcgcgcaggccaacgcggcgctcgacaaggacggccgcctggtg
ggcgagctggtctccgcgcgcgagaagggcgaatccatcctgaccggccccgacaccatc
cagtacatggacgtgtcgccggcgcagatcgtgtcggtggccgcctcgctggtgcccttc
ctggagcacgacgacgccaaccgcgcgctgatgggcgccaacatgtcgcgccaggccgtg
cccgtgctgcgccccgagaagccctttgtgggcaccggcatcgagcgcgtggccgcggtc
gactccggcacggtggtgacggccacccgcggtggcgtggtcgactacgtcgacgccacc
cgcatcgtgatccgcgtcaacgacgaggaagcggtggccggcgaagtgggcgtggacatc
tacaacctcatcaagtaccagcgctccaaccagaacaccaacatccaccagcgccccatc
gtcaagaagggcgacaagctggccaagggtgacgtgatcgcggacggcgcgtccaccgac
ctcggcgagatctcgatcggccagaacatgctgatcgccttcatgccctggaacggctac
aacttcgaggactcgatcctcatcagcgaacgcgtggtggccgacgaccgctacaccagc
atccacatcgaggagctggtggtgatggcgcgcgacaccaagctgggcgccgaggaaatc
acccgcgacatcccgaacctggccgagcagcagctcaaccgcctggacgagtccggcatc
atctacgtgggcgccgaggtgctgcccggcgacgtgctggtcggcaaggtcacgcccaag
ggcgagaccacgctcacgcccgaagagaaactgctgcgcgcgatcttcggcgagaaggcc
tccgacgtgaaggacacctcgctgcgcgtcgaacagggctcgcagggcacggtgatcgac
gtgcaggtcttcacccgtgaaggcatccagcgcgacaagcgcgcccagcagatcatcgac
gacgagctcaagcgcttccgcctcgacctcaacgaccagctgcgcatcgtcgaggccgac
gccttcgaccgcatcgagaagctgctggtgggcaaggtcgccaacggcggtccgaagaag
ctggccaaaggcaccaccatcgacaaggcctacctggccgatgtcgagaagtaccactgg
ttcgacatccgcccggcggacgacaacgtggccgcgcagctcgagtcgatcaagaactcg
atggagcagacgcgccacagcttcgacctcgcgttcgaagagaagcgcaagaagctcacg
cagggcgacgagctgcccgctggcgtgctcaagatggtcaaggtctacctggccgtcaag
cgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggcgtggtctcc
aagattgttccggtggaggacatgccgcacatggccgacggcacccccgccgacgtggtg
ctcaacccgctgggcgtgccttcgcgcatgaacgtgggccaggtgctggaagtgcacctg
ggctgggccgccaagggcctgggccagcgcatcggcgacatgctgcagcgcgaagccaag
gtggcggaggtgcgccagaccctcgagtccatcttcaacaccatgggcaagaaggaagac
ttcgccggcctgtccgacgccgaggtcatcgagatggcgcagaacctgcagcacggcgtg
cccttcgcgtcgcccgtgttcgacggtgcctcggaagacgagatccgcgccatgctcaag
ctggcctacccggacgacatcgccgcgatcaagggcctgaccgagacgcgcacccaggcg
cagctctacgacggccgcaccggcgacgccttcgagcgcaagaccaccgtgggctacatg
cacttcctcaagctgcaccacctggtcgacgacaagatgcatgcccgctccaccggcccg
tactcgctcgtcacccagcagccgctgggcggcaaggcgcagttcggtggccagcgtttc
ggcgagatggaggtctgggcgctggaagcctacggcgcgtcctacatcctgcaggagatg
ctcaccgtcaagtccgacgacgtgcagggccgcaccaaggtgtacgagtccatcgtcaag
ggcgagcacaccatcgacgcgggcatgcccgagtcgttcaacgtgctggtcaaagagatc
cgctcgctcggcatcgacatcgaactcgagcgttcgtga
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