Hymenobacter sp. DG25A: AM218_08880
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Entry
AM218_08880 CDS
T04064
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hye
Hymenobacter sp. DG25A
Pathway
hye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM218_08880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hye03019
]
AM218_08880
03400 DNA repair and recombination proteins [BR:
hye03400
]
AM218_08880
Enzymes [BR:
hye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM218_08880
Messenger RNA biogenesis [BR:
hye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AM218_08880
DNA repair and recombination proteins [BR:
hye03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AM218_08880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ALD21309
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All DBs
Position
complement(2078944..2080863)
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AA seq
639 aa
AA seq
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MPHPTDDILHVLRQTWGHTQFRPLQEDIIRSVLAGQDTLALLPTGGGKSICFQVPALARP
GLCLVVSPLIALMKDQVENLRKRGIKAEAVFSGMTHTEIDQTLDNCVYGPVKFLYVSPER
LLTDMFRARVGKMKVSLLAVDEAHCLSQWGYDFRPPYLKIAELRELLPGVPCIALTATAT
EQVRQDIVEKLHFGATHRVFQQSFARPNLSYSVLSTEDKLKRLLEVVRGVGADKTSIVYA
RTRRQTEDTAAFLQQYNVAAAAYHAGLPAEQRTRTQQDWMANKTRCIVATNAFGMGIDKP
DVRLVVHLDAPDNLEAYYQEAGRAGRDEKYAFAVLLSGPNDADELRRRTRQAYPPLDVVR
RVYQALANFSRTAVGGGELVAFDFDLQQFAETYRLKALDAHNSLRTLAREGFVQLNEAVN
NPARVHIPINHTDLYRFQVANQQHDQLIKSLLRFNGGELFAGFQRISENSLAQHLKLSVV
DVRKMLLFLHRSGIIQYQPKHESPQALFTTPRFDADKLPLDQKRLQQAQELAVHKTESVI
RYTGGGRCRQQLLLEYFGELDAPACGVCDICLAKKKASQDAAPTPALREQLLKLLRTTPQ
TPREVLAHFVPGQAPAVTELLRELVERGELKYAPDGRLG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaccccaccgacgacattctgcacgtattgcgccagacgtgggggcatacccag
ttccggccgctgcaggaggatattatccggtcggtgctggcggggcaggatacgctggcg
ttgctgcccacgggcggcggcaaaagcatctgctttcaggtgccggcgctggcccggccg
gggctgtgtctggtggtatcgccgctcattgccctgatgaaggaccaggtggaaaacctg
cgcaagcgcggcatcaaggccgaggccgttttctccggcatgacccacaccgaaatcgac
cagacgctggacaactgcgtgtacgggccggtgaagttcctctatgtcagccccgaacgg
ctgctgacagacatgtttcgggcccgcgtaggcaagatgaaagtgagcctgctggctgta
gatgaagcgcactgcctttcccagtggggctacgatttccgcccgccctacctgaaaata
gcggagctacgcgagctgctgcccggcgtgccctgcattgccctcacggccaccgccacc
gagcaggtgcgccaggatattgtggagaagctgcatttcggggccacgcaccgggtgttt
caacaaagctttgcccggcccaacctctcatattcggtcctgagcacagaggataaactc
aagcgcctgctggaagtggtgcgcggcgttggggccgataaaactagcattgtgtatgcc
cgcacgcggcgccagacggaagacaccgccgccttcctgcagcagtataacgtagccgcg
gccgcctaccacgccggcctgcccgccgagcagcgcacccgcacccagcaggactggatg
gccaataaaacgcgctgcatcgtggccaccaacgccttcgggatgggcatcgataagccc
gatgtgcgcctggtggtgcatctggacgcgcccgacaacctggaagcctactaccaggaa
gccggccgcgcgggccgcgacgagaaatacgcctttgccgtgctactctccggccctaac
gatgccgacgaactgcgccgccgcacccggcaggcctacccgccgctggatgtagtgcgc
cgcgtgtaccaggccctggctaacttctcccgcacggccgtgggcggcggtgagctggtg
gccttcgattttgacctgcaacaattcgcggaaacctaccgcctcaaggccctggatgcg
cacaacagcctgcgcacgctggcccgggaaggtttcgtgcagctgaacgaggccgtgaac
aaccccgcccgcgtgcacatccccatcaaccataccgacctgtaccgcttccaggtggcc
aaccagcagcacgaccagctcatcaagagcctgttgcgctttaatgggggcgagctgttc
gcgggtttccagcggatttcggaaaacagcctggcccagcacctgaagctaagcgtggta
gatgtgcgcaagatgctgctgtttctgcaccgctcgggcatcattcagtaccagcccaag
cacgagtcgccgcaggcgctgtttaccaccccgcgctttgatgctgataagcttccgctg
gaccagaaacgcctgcagcaggcccaggagctagcggtgcacaaaacggaatccgtcatt
cgctacacgggcggcgggcgctgccgccagcagctgttgctggaatattttggtgagcta
gatgcgccggcctgcggcgtgtgtgacatctgcttggctaaaaagaaagccagtcaggac
gctgcgcccacacccgcgctgcgggagcaactgctaaagctcctgcgcaccaccccgcaa
accccccgggaggtgctggcgcattttgtgcccggccaagctccggccgtaacggaactg
ctccgggagttggtagagcgaggcgagctgaagtacgcgcctgatggcaggttggggtag
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