Hydrogenibacillus sp. N12: K2M58_00585
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Entry
K2M58_00585 CDS
T07426
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyi
Hydrogenibacillus sp. N12
Pathway
hyi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K2M58_00585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyi03021
]
K2M58_00585 (rpoC)
03400 DNA repair and recombination proteins [BR:
hyi03400
]
K2M58_00585 (rpoC)
Enzymes [BR:
hyi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K2M58_00585 (rpoC)
Transcription machinery [BR:
hyi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K2M58_00585 (rpoC)
DNA repair and recombination proteins [BR:
hyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K2M58_00585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QZA33119
LinkDB
All DBs
Position
115639..119235
Genome browser
AA seq
1198 aa
AA seq
DB search
MDVNRFESMKISLASPDKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTKDWECA
CGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYLKGIPSRMGLVLDMS
PRALEEVIYFASYIVTDPGLTPLEKKQLLSEKEYRSYREKYGDAFQAEMGAEAIKKLLME
IDLDKEIAQLKEELLKAQGQKRTRIIRRLEVLEAFRASGNRPEWMILDVLPVIPPDLRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELEAPEIIVQNEKRMLQEAVDALIDNGRR
GRPVTGAGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMTQCGLPKEM
ALELFKPFVMRELVDRGLASNIKNAKRKVERVRPEVWDVLEDVIREHPVLLNRAPTLHRL
GIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMLAAQNILN
PKDGKPVVTPTQDMVLGNYYLTMEKPGARGEGRVFATSEEAIMAYQLGEIELHARIVLPV
AALKKTSFTDEERRARLITTVGKLLFNEIFPEDFPYINAPLKGDSVGAVDRAFLLFDKGV
PVKPIIEALPPTEALKKSDLGKIIAICYERYGTTTTSEILDRIKDIGFHFSTKGGITIAA
ADIVVLEEKKDILARAEEQVQNVQRQYRRGLITDEERYNRVIAIWSKAKDEIQTKLLASL
EPFNPINMMSTSGARGNASNFTQLAGMRGLMANPSGRIIEHPIKNSFREGLTVLEYFIST
HGARKGLADTALRTADSGYLTRRLVDVAQDVIVREADCGTDQGVEVTALRSGPEEISTLF
ERISGRVAFETVRDPRTGEVLVRPNELITDAIARRIVEAGIEKVRIRSVLTCRTHHGVCQ
MCYGRDLATGRLVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVQELF
EARTPKGQAVVSEIAGEVVDIRDGRDKREIEIRGDVETKTYAVPYGSRLKVAVGDRVDAG
AELTEGPVDPKDLLRIRGARETQAYILREVQKVYRMQGVEINDKHIEIMIRQMMRKVRVI
HAGDTELLTGTIVDVRDFEEANRKVLAAGKAPAVARPILLGITKASLETESFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLIPAGTGMRRYREIEVVPKAPPAPYDAAGS
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcaaccgctttgaatccatgaagatcagcctcgcatcgccggacaaaatccgc
tcgtggtcccacggggaagtcaaaaagcccgagacgatcaactaccggacgcttcggccg
gaaaaagaaggcctcttctgcgaaaaaatcttcgggccgaccaaggactgggagtgcgcc
tgcggcaagtacaagcggatccgctacaaaggcgtcgtctgcgaccgctgcggcgtcgaa
gtcacccggtccaaggtccgccgggagcggatgggtcacatcgagctcgccgcgccggtg
tcccacatctggtacctgaagggaattccgagccggatggggctcgtcctcgacatgtct
ccccgggccctcgaagaggtcatctacttcgcttcctacatcgtcaccgacccggggctc
acgccgcttgagaaaaagcagctcctctccgaaaaggaataccggagctaccgggaaaaa
tacggcgacgccttccaggcggagatgggcgccgaggcgatcaaaaagctcctcatggag
atcgacctcgacaaagagatcgcccagctcaaagaagagctcttaaaagcccagggacag
aagcggacgcgcatcatccgccggctggaggtgctcgaggccttccgggcatccggcaac
cggccggagtggatgatcctcgacgtccttccggtcatcccgccggacctccggccgatg
gttcagctcgacggcggccgcttcgcgacgtccgacctcaatgacctctaccgccgggtc
atcaaccgaaacaaccgcctcaagcgcctcctggagctcgaggcgccggagatcatcgtg
cagaacgaaaaacggatgctccaggaagccgtcgacgccctcatcgacaacggccgccgg
ggccggccggtgaccggcgccggcaaccgacccttaaaatccctctcccacatgctcaaa
gggaagcagggccgctttcggcaaaacctcctcggcaagcgcgtcgactactccggccgc
tcggtcatcgtcgtcggtcccaacctcaagatgacccagtgcggcctcccgaaagagatg
gccctcgaactcttcaagccgttcgtcatgcgggagctcgtcgatcgggggctggcgtcc
aacatcaaaaacgccaagcggaaggtcgagcgcgtgcggcccgaggtgtgggacgtcctc
gaagacgtcatccgggagcacccggtcctcctgaaccgggcgccgaccctgcaccgcctc
ggcatccaggcctttgagccggtcctcgtcgaaggccgggcgatccggctccatccgctg
gtgtgcaccgcctacaacgccgacttcgacggcgaccagatggccgtccacgtcccgctc
tcggcggaggcccaggccgaagcccgggtgctcatgctcgcggcgcaaaacatcctgaac
ccgaaggacggcaagccggtcgtcacgccgacccaggacatggtcctcgggaactactat
ctcacgatggaaaagcccggtgcccggggcgagggacgggtgttcgccacgtcggaagag
gcgatcatggcctaccagctcggcgagatcgagctccacgcccgcatcgtccttccggtg
gcggccttgaagaaaacgtcctttaccgacgaagagcgccgcgcccggctcatcaccacc
gtcgggaagctccttttcaacgagatcttccccgaagactttccctacatcaacgcgccg
ctcaagggcgattcggtcggcgccgtcgatcgggcgttcctcctcttcgacaagggcgtg
ccggtcaagccgatcatcgaggccctgccgccgaccgaggccctcaaaaagagcgacctc
ggcaagatcatcgccatctgctacgagcgctacggcacgacgacgacgtcggagatcctc
gaccggatcaaggacatcggcttccacttctccaccaagggcggcattaccatcgccgcc
gccgacatcgtcgttctcgaagaaaagaaagacattctggcccgggccgaggagcaggtg
caaaacgttcagcggcagtaccgccggggcctcatcaccgacgaggagcggtacaaccgc
gtcatcgccatctggagcaaggcgaaggacgagattcagacgaagctcctcgccagcctc
gagccgttcaacccgatcaacatgatgtccacctccggcgcccgggggaacgcctcgaac
ttcacccagctcgccggcatgcgggggctcatggccaacccgtccggccgcatcatcgag
cacccgatcaaaaacagctttcgggaaggtcttacggtcctcgagtacttcatctccacc
cacggcgcccggaagggactggccgacacggcgcttcggaccgccgactccggatacctc
acccggcgcctcgtcgacgtcgcccaggacgtcatcgtccgggaggccgactgcggcacc
gaccagggcgtcgaagtgacggcgcttcgctccggcccggaggagatctcgaccctgttc
gaacggatcagcggccgggtcgccttcgagacggtccgggacccccgcaccggagaagtc
ctcgtccggccgaacgagctcattacggacgcgatcgcccggcggatcgtcgaggccggc
atcgaaaaggtccgcatccggtcggtcctcacctgtcggacgcatcatggcgtctgccag
atgtgctacggtcgggatctcgccaccggccggctcgtggagatcggcgaggccgtcggc
atcattgccgcccagtcgatcggcgagcccgggacgcagctcaccatgcggacgttccac
accggcggtgtcgccggcgaggacatcacgcaggggcttccgcgggtccaggagctgttc
gaggcccggacgcccaaagggcaggccgtcgtcagcgaaatcgccggcgaggtcgtcgac
atccgggacggccgcgacaagcgggagatcgagatccggggcgacgtcgaaacgaagacg
tacgccgttccgtacggctctcgcctcaaggtcgccgtcggcgaccgggtcgacgccggc
gccgagctcaccgaagggcccgtcgatccgaaggacctgctccgcatccggggggcccgg
gagacgcaagcgtacatcctccgggaagtccagaaggtttaccggatgcagggcgtcgag
atcaacgacaagcacatcgagatcatgattcggcagatgatgcggaaagtccgcgtcatc
cacgccggcgacaccgaactcctcaccggcacgatcgtcgatgtccgggacttcgaagag
gcgaaccgcaaggtgctcgccgccggcaaggcgccggcggtcgcccggccgatcctcctc
ggcatcacgaaggcctccctcgagaccgaatcgtttctttccgccgcctccttccaggag
acgacgcgggtcctgaccgacgccgcgatcaagggcaagcgggatgagctcctcggtctc
aaggaaaacgtcatcatcggcaagctcatccccgccggcaccggcatgcgccgctaccgg
gagatcgaggtcgtgccgaaggcgccgccggcgccttacgatgcggcgggaagctaa
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