Hydrogenophaga crassostreae: LPB072_01310
Help
Entry
LPB072_01310 CDS
T04505
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB072_01310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyl03019
]
LPB072_01310
03400 DNA repair and recombination proteins [BR:
hyl03400
]
LPB072_01310
Enzymes [BR:
hyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB072_01310
Messenger RNA biogenesis [BR:
hyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB072_01310
DNA repair and recombination proteins [BR:
hyl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LPB072_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOW15281
UniProt:
A0A167GUJ2
LinkDB
All DBs
Position
266098..267999
Genome browser
AA seq
633 aa
AA seq
DB search
MIDVAPEGETLETCAGVLQEVFGYDAFRGPQAQIVSHVSEGGDALVLMPTGGGKSLCYQV
PAIVRERAGQGLTVVVSPLIALMHDQVGALLEAGVAAAFLNSSLSLEDAQRVEKEMLRGE
ITLLYAAPERLTTPRFLALLDSLHERGKLSLFAIDEAHCVSQWGHDFRPEYRGLVVLHER
FAGVPRVALTATADDLTRADIVERLQLEEARTFISSFDRPNIRYTIVEKKDGTQQLLRFI
RDEHSSPQGHDAGIVYCQSRKRVEEVAGMLCEAGFNALPYHAGLDAAKRLNHQDRFLREE
GLIMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGEAANAWMVYGLQDVV
NQRRMIDESPAADEFKQVLRGKLDALLTLAEASDCRRVRLLGYFGEASEPCGNCDNCIKP
PELHDATEAARKVLSCIYRVQQASGTAFGSGHIMDILRGKQTDKMAQYAHDKLSTFGIGA
DWSETQWRALLRQLVAREAVHVDAAHFNTLHLAEGARAILKGGAQVWMKQPSEKPSRSRS
RGSSRNAANDVAPDGQPLSLAQRECLDALKAWRAEVAREHNLPAFVIFHDATLRALAAQM
PQSLADLDGVAGIGQKKREAYGSEVLRVVSAFV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacgtcgcgcccgaaggcgaaacgctggaaacctgcgccggcgtgctgcaggag
gtgtttggctacgacgccttccgtggcccgcaggcccagatcgtttcgcatgtgagtgaa
ggcggtgacgcgctggtgctgatgcccacgggtggcggcaaatcgctgtgttaccaggta
ccggccatcgtgcgggaacgcgccgggcagggcctcacggtggtggtgtcgccgctgatc
gcgctgatgcacgaccaggtgggcgcgctgctcgaagccggcgtggccgcggccttcctc
aactccagcctctcgctggaagacgcgcagcgcgttgaaaaagaaatgctgcgcggcgag
atcacgctgctctacgccgcccccgagcggctgaccacgccgcgctttttggcgctgctc
gattcgcttcacgagcgtggcaagctcagtctgtttgccatcgacgaagcccattgcgtg
agccagtggggccacgattttcggcccgaataccgcggcctggtggtgttgcacgagcgc
tttgcgggcgtgccccgcgtggcgctcaccgctacggcagacgacctcacccgcgccgat
atcgtcgagcgcctgcagctggaagaagcgcgcaccttcatcagcagcttcgaccggccc
aacatccgctacaccattgtcgagaagaaagatggcacacagcaactgctgcgcttcatc
cgcgacgaacacagcagcccccaggggcacgacgccggcatcgtgtactgccagtcgcgc
aaacgcgtcgaagaggtggcgggcatgttgtgtgaagcgggcttcaatgccctgccgtac
cacgccgggctggacgccgccaaacgcctgaaccaccaggaccgcttcctgcgcgaagag
ggcctgatcatggtcgccaccatcgcctttggcatgggcatcgacaagcccgatgtgcgc
ttcgtggcccacctcgacatgcccaagaacattgaaggctactaccaggagactgggcgc
gccggacgcgatggcgaagccgccaacgcctggatggtctatggcctgcaagacgtggtg
aaccagcgccgcatgatcgacgagagccccgcggccgacgagttcaagcaggtgctgcgc
ggcaagctcgatgccttgttgacgctggccgaggccagcgattgccggcgggttcgattg
ctgggctactttggtgaagccagtgagccctgcgggaattgtgacaactgcatcaaaccg
ccggaactgcacgatgcaacagaggcggcgcgcaaggtgctttcgtgcatctaccgtgtg
cagcaggccagtggcaccgcttttggatcaggccacatcatggacatcctgcgtggcaag
cagaccgacaagatggcgcagtacgcgcacgacaagctgtccaccttcggcattggcgcc
gactggtccgaaacgcaatggcgcgcgctcttgcgccagctggttgcgcgcgaagcggtg
catgtcgatgcggcgcatttcaatacgctgcacctggccgagggcgctcgtgcgatcttg
aagggtggcgcccaggtgtggatgaagcagcccagcgaaaagcccagccgctcacgatcc
aggggcagcagccgcaatgcggccaacgacgtggcgcccgacgggcaaccgctcagcctg
gcccagcgggagtgtctggatgcgctcaaggcctggcgcgccgaagtggcccgggaacac
aacctgccggccttcgtgatctttcacgacgccaccttgcgcgccctggccgctcaaatg
ccccaatccctggccgatctggacggggtggcaggtatcgggcagaaaaaacgcgaggcc
tatggatccgaggtgctgcgcgtggtgagtgcttttgtgtag
DBGET
integrated database retrieval system
