Hydrogenophaga sp. BPS33: F9K07_26840
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Entry
F9K07_26840 CDS
T06379
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hyn
Hydrogenophaga sp. BPS33
Pathway
hyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F9K07_26840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyn03021
]
F9K07_26840 (rpoB)
03400 DNA repair and recombination proteins [BR:
hyn03400
]
F9K07_26840 (rpoB)
Enzymes [BR:
hyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F9K07_26840 (rpoB)
Transcription machinery [BR:
hyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F9K07_26840 (rpoB)
DNA repair and recombination proteins [BR:
hyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F9K07_26840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5008
Motif
Other DBs
NCBI-ProteinID:
QHE88243
LinkDB
All DBs
Position
complement(5804932..5809056)
Genome browser
AA seq
1374 aa
AA seq
DB search
MASASNYSYTERKRIRKSFGTRENVLAIPYLLQMQKDAYTAFLQADSAPKKRTNEGLQAA
FEAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTA
QSKVIKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARIIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGLTPETILANFFVNDH
FRVMDSGAQMAFVPERLRGEVARFDITDKSGKVVVAKDKRITVRHTRELEQSGTTHISVP
EDFMIGRVVARNIVDADTGEIIAKANEELTEALLKKLRTAGVQDLQCLYTNELDQGAYIS
QTLRIDETADEFAARVAIYRMMRPGEPPTEDAVQALFHRLFYNPDTYDLSRVGRMKFNAR
VGRDESTGPMVLSNDDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGL
ARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKR
RVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIE
TPYRRVVEGKVTNQIDYLSAIEEGKYVIAQANAALDVDGRLTGDLVSAREKGESILTPSD
TIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVA
AIDSGTVVTAKRGGVVDYVDATRIVIRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQR
PIVKKGDKLAAGDVIADGASTDLGEISIGQNMLIAFMPWNGYNFEDSILISERVVADDRY
TSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDDSGIIYVGAEVLPGDVLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQI
IDDELKRFRLDLNDQLRIVEADAFDRIEKLLVGKIANGGPKKLAKGTTIDKAYLDDVEKY
HWFDIRPADDTVAAQLESIKNSMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRRLQPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEV
HLGWAAKGLGQRIGDMLQAEGKVAELRKFLETVYNSAGKVETLADLSDAEVLEMAENLQT
GVPFATPVFDGASEDEIRAMLKLAYPDDIAQLKGLTETRTQAQLYDGRTGDAFERKTTVG
YMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQ
EMLTVKSDDVQGRTKVYESIVKGEHTIDAGMPESFNVLVKEIRSLGIDIELERS
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcatcgaattactcatacaccgaacgcaagcgcatccgcaagagctttggt
acgcgcgagaacgtgctcgcgattccttacctcctgcaaatgcagaaggacgcgtacacc
gcgttcctgcaagccgacagcgccccgaagaaacgcaccaacgaaggcctgcaggcggct
ttcgaggcagctttcccgatcgtctcccacaacggttttgtggagatgaagttcgtcgaa
tacaacctggccaagcccgcgttcgacgtgcgcgagtgccagacccgggggttgactttc
gcttctgccgtgcgcgcgcgcgtgcagctgatcatctatgaccgcgagtcctcgaccgcg
caatccaaggtgatcaaggaagtgaaggagcaggaggtctacatgggcgaagtgcccctg
atgaccgacaagggttctttcatcatcaacggcaccgagcgcgtgatcgtgtctcagttg
caccgttcgccgggcgtgttcttcgagcacgacaagggcaagacgcacagctcgggcaag
ctgctgttctccgctcgcatcattccctatcgcggttcctggctcgatttcgaattcgac
ccgaaggacgtgctgttcttccgcgtcgaccgccgccgcaagatgccggtcaccatcctg
ctcaaggccattggcctgacgccggaaaccatcctggccaacttcttcgtcaacgaccac
ttccgcgtcatggacagcggcgcgcagatggccttcgtgcccgagcgtctgcgcggcgaa
gtggcccgtttcgatatcaccgacaagagcggcaaggtggtggtggccaaggacaagcgc
atcaccgtgcgccacacccgcgaactcgaacaatcgggcaccacgcacatcagcgtgccg
gaagacttcatgatcggtcgcgtcgtggcgcgcaacatcgtggatgccgataccggtgaa
atcatcgccaaggccaacgaagagttgaccgaagccctgctgaagaagctgcgcaccgcc
ggcgtgcaggacctgcagtgcctgtacaccaacgaactggaccagggcgcctacatttcg
cagaccctgcgcatcgatgaaacggccgacgagttcgccgcgcgtgtggccatctaccgc
atgatgcgccccggcgagccgccaaccgaagacgccgtgcaggccctgttccaccgcctg
ttctacaacccggacacgtacgacctgtcgcgcgtgggccgcatgaagttcaacgcgcgt
gtgggccgcgatgaatccaccggccccatggtgctgtccaacgacgacatcctggccgtg
gtcaagatcctggtggacctgcgcaatggccgcggtgaagtcgatgacatcgaccacctg
ggcaatcgccgcgtgcgctgcgtgggtgaactcgccgagaaccagtaccgcaccggtctg
gcccgcatcgagaaggccgtgaaggagcgtctgggtcaggccgagcaagagccgctgatg
ccgcacgacctgatcaactccaagccgatttctgcggcgctcaaggagttcttcggcgcg
tcgcagctgtcgcagttcatggaccagaccaacccgctcgcggagatcacgcacaagcgc
cgcgtctctgccctgggcccgggcggtctgacccgcgaacgcgccggcttcgaggtgcgc
gacgtgcacgtgacccactacggccgcgtctgcccaatcgaaacgccggaaggtccgaac
attggcctgatcaactcgctggcgctgtacgcgcgtctgaacgaatacggcttcatcgaa
acgccgtaccgccgcgtggtcgaaggcaaggtgacgaaccagatcgactatctctcggcg
atcgaagaaggcaagtacgtgattgcgcaggccaacgccgcgctggacgttgacggccgt
ctgaccggcgatctggtctccgcgcgcgaaaagggcgaatcgatcctcacgccgtccgac
accatccagtacatggacgtgtccccggcgcagatcgtgtccgtggccgcttcgctggtg
ccgttcctcgagcacgatgacgcgaaccgcgccttgatgggcgccaacatgtcgcgccag
gctgtgcctgtgctgcgccccgagaagccgctggtgggcaccggcatcgaacgcgttgcc
gcgatcgactccggcaccgtggtgaccgccaagcgtggcggcgtggtggactacgtggac
gcgacccgcatcgtgatccgcgtgaacgacgccgaggccgtggccggtgaagtgggtgtg
gacatctacaacctcatcaagtaccagcgttccaaccagaacaccaatatccaccagcgc
ccgatcgtcaagaagggcgacaagctggccgcgggtgacgtgatcgccgatggcgcgtcg
accgacctgggggaaatctcgatcgggcagaacatgctgatcgcgttcatgccctggaac
ggctacaacttcgaagactcgatcctgatctccgaacgcgtggtcgccgacgaccgctac
acctcgatccacatcgaggagctggtcgtgatggcgcgcgacaccaagctgggcgcggaa
gaaatcacccgcgacattcccaacctggccgagcagcagctcaaccgtctggacgactcc
ggcatcatctacgtgggtgccgaagtgctgccgggcgatgtgctggtgggcaaggtcacg
cccaagggcgagaccacgctgacgccggaagaaaagctgctgcgcgcgatcttcggcgag
aaggcttccgacgtgaaggacacgtcgctgcgcgtggaccagggctcgcaaggcaccgtg
atcgacgtgcaggtgttcacccgcgaaggcatcacgcgcgacaagcgcgcccagcagatc
atcgacgacgaactcaagcgtttccgcctggatctgaacgaccagctgcgcatcgtggaa
gccgacgcgttcgaccggatcgagaagctgctggtgggcaagatcgccaacggcggcccg
aagaagctggccaagggcacgaccatcgacaaggcctacctggacgacgtcgagaagtac
cactggttcgacatccgcccggccgacgacactgtggccgctcagctcgagtcgatcaag
aactcgatggagcagacgcgccacagcttcgacctggcgttcgaagagaagcgcaagaag
ctcacgcaaggtgacgagctgcccgctggcgtgctcaagatggtcaaggtctacctggcc
gtcaagcgccgcctgcagcccggcgacaagatggccggccgccacggcaacaagggtgtg
gtctccaagatcgtgcccgtggaagacatgccgcacatggccgacggcacgcctgctgac
atcgtgctcaacccgctgggcgtgccttcgcgcatgaacgtgggtcaggtgctcgaagtc
cacctgggctgggccgccaagggcctgggccagcgcatcggcgacatgctgcaggccgaa
ggcaaggtggccgagctgcgcaagttcctggagacggtctacaactcggccggcaaggtg
gagaccttggccgacctgagcgacgccgaagtgctggagatggccgagaacttgcagacc
ggcgtgccgttcgccaccccggtgttcgacggtgcgtcggaagacgagatccgcgcgatg
ctcaagctggcctacccggacgacatcgcccaactcaagggcctgaccgagacccgcacc
caggcgcagctgtacgacggccgcacgggtgacgccttcgagcgcaagaccaccgtgggc
tacatgcacttcctgaagctgcaccacttggtcgacgacaagatgcacgcccgctccacc
ggcccgtactccctcgtcacccagcaaccgctgggcggcaaggcgcagttcggtggccag
cgtttcggggagatggaagtgtgggcgctggaagcctacggcgcttcgtacatcctgcag
gaaatgctcaccgtcaagtccgacgacgtgcagggccgcaccaaggtgtacgaatccatc
gtcaagggcgagcacacgatcgacgcgggcatgcccgagtcgttcaacgtgctggtcaag
gaaatccgctcgctcggtatcgacatcgagctggaacgttcctga
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