Helicoverpa zea (corn earworm): 124634552
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Entry
124634552 CDS
T08400
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8 isoform X1
KO
K18734
protein SMG8
Organism
hze
Helicoverpa zea (corn earworm)
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124634552
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124634552
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
M-inducer_phosp
Motif
Other DBs
NCBI-GeneID:
124634552
NCBI-ProteinID:
XP_047026124
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Position
11:complement(10973642..10983185)
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AA seq
818 aa
AA seq
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MKVFSITDIPEFSKKERIVVVGVIGKSPYRYPNKTTPLLPSVQSKENFIECHWDERRAIL
YLHAITYLDTKRLTALAATLDEDSKSADTDADAANWLVASGDLAAESCKAIALIFHLCHI
VVLSSPTSVFDLGYLQLFKAMDAYRNEQLARSTAALVTAKTTGNWESHRRSCCPRLLFHF
RRAPNPVRKVPAALKRLEHAVEDQLYFILRKARIITNVCAKSLFAIPKNEEFVYISGEEE
SSGARELSSLVRGLAARCNATPDPGAQRPSFRQFLQTHIDMAFGEGFDDNVGKYAMSTSF
FELPSAQSWRSAAQALTPVYLSSKEEDQTSGALYDALATDVRFSQARCAKVLPIAQASYA
EGLPAHYSSQHHAHKVGVALGVLGSMARGPLARAARARLRAACAATWRARSLCEALSLTG
HVCIEPDHDSSKEHSSGVRYVSACNCGRCKCSREDPYTLRRANLTFYAQAAEECGVCVTL
QAIDFPVFQPSTPSYKAAALKDEVEEPSESAVVRASPAGSGASPSDANWSAPDALSPGSA
RDDDDDDDKSHASDTRYVVPLTRDAAEKVMSRQPSTTEYLPGMLHTASPAGLLPAFSSWS
VVCLGASSLYSHSLGLPEHLQPGFLPHTNYLLPWDCAVRVESMSAWRVSGPTRGRGKIAP
HHHLTVKIFIGFEYECPRGHRFMMSGPDTVVSGGGGGCSREAGAAGGRLAAADMPLYAAC
LCRAAPAPPLAQLMRVHVVTPKAPVHVTLDPKVQPIPGGPIFIPQPVGSPPIKLSASAYW
VLRLPYMYSDERGCLPRPRAGALQHPGMLIAPLFGLQD
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtattttccataaccgatatacctgagttctcgaagaaggaacgtatagttgta
gtgggtgttataggaaaatcgccgtatcggtaccctaacaaaacaaccccacttttgcct
tctgtccagtccaaagagaattttatagaatgccactgggacgagcgtcgcgccatcctc
tacctccatgccatcacatacctcgacacaaagcggctaacagccctagccgcgactctt
gatgaagactccaagagtgcagacactgatgcagacgctgccaactggctggtggcatca
ggcgacctggcagcagagtcctgcaaggctatcgcgctgatattccacctgtgtcatatt
gtggtgctgtcttctcctacatcggtgtttgatctgggctatctacagctgtttaaggct
atggatgcttacagaaatgagcaactagcgcgcagcacagcagcccttgtaacagcaaag
acgacaggaaactgggagtctcacagacgtagctgttgccctcgacttctcttccacttc
cggcgcgcccccaaccctgtgcggaaggtaccagcggcgctgaagaggttggagcacgca
gtggaagaccagctgtattttatattgaggaaggctaggattattactaatgtttgcgca
aaatccctattcgcgatcccaaagaacgaagaattcgtttacataagtggcgaggaggag
agctcaggggcccgcgaactaagttccctggtccgcggcctcgcagcccggtgtaacgcg
acccccgatccgggggcccagcggcctagcttccgacagttcttgcaaactcatatagac
atggcgtttggagaaggcttcgatgataacgtcgggaagtatgctatgagtacgtcgttc
tttgagctaccaagcgcacaatcctggcgctcagccgcccaggctctgaccccggtatac
ttatcaagcaaggaggaggatcagacatccggcgccctgtacgacgcgctcgctactgac
gtgcgattctcacaagcgaggtgtgctaaggttctgccaatagcgcaagcgtcgtacgcg
gaaggtttgcccgcgcattattccagtcaacatcacgcacataaagtgggcgtggcgctg
ggcgtgctgggcagcatggcgcggggcccgctggcgcgcgcggcgcgggcgcggctgcgg
gccgcgtgcgccgccacgtggcgcgcgcgcagtctgtgcgaggcgctgtcgctcaccggc
cacgtctgcatcgagcccgaccatgacagcagcaaggaacactcatcaggcgtccgctac
gtgtcggcctgcaactgcgggcgctgcaagtgttcgcgcgaggacccgtacacgctgcgc
cgcgctaacctcacgttctacgcgcaggcggccgaggagtgcggcgtctgtgtcacgctg
caggccatcgacttccctgtcttccagccctccacgcctagttacaaagcggcagcctta
aaggacgaagtggaagagccatcagaaagcgccgtggtccgcgcgtcgccggccggctcg
ggcgcttcgccctccgacgcgaactggtcggcgcccgacgccctgtccccgggctccgcg
agagatgacgacgatgatgatgataaatcccatgcctctgataccagatatgtggtgccg
ctcaccagggatgctgctgaaaaagtaatgagccgccaaccctcaacaacagagtacctg
ccaggcatgttacacacggccagcccagcaggccttctgccggcgttctcgagctggtca
gtggtgtgcctgggcgcgtcgtcgctatactcgcactcgctgggcctgcccgagcacctg
cagccgggcttcctgccgcacactaactatctgctgccgtgggactgtgccgtccgtgtg
gagtcgatgagcgcatggcgggtgtcgggcccgacgcgcgggcgcggcaagatcgcgccg
caccaccacctcaccgtcaagatattcatcggcttcgagtacgagtgcccccggggacac
aggttcatgatgtctggtccggacacggtggtgtcgggcggcggcggcggctgctcgcgc
gaggcgggcgcggcgggcgggcggctggcggcggccgacatgccgctgtacgccgcctgc
ctgtgccgcgccgcgcccgcgccgccgctggcgcagctcatgcgcgtgcacgtcgtcacg
cccaaggcgcccgtgcatgtcacgctcgaccctaaggtacaaccaatacccggcggtccg
atcttcatcccgcaaccagtggggtccccgcctatcaagctctcagcctcagcgtactgg
gtgcttcgactcccgtacatgtacagcgacgagcgcggctgcctgcctcgacccagggcc
ggagccctgcagcaccccggcatgctcatagcacctctattcggactgcaggactag
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