Helicoverpa zea (corn earworm): 124644740
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Entry
124644740 CDS
T08400
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124644740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hze03019
]
124644740
Messenger RNA biogenesis [BR:
hze03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124644740
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124644740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124644740
NCBI-ProteinID:
XP_047040189
LinkDB
All DBs
Position
31:5402141..5426807
Genome browser
AA seq
2391 aa
AA seq
DB search
MNLDPLTFSLSQINYLVINLSKKNFKQTNQELSQLVSLYGLEAENQLLRCLLTEAAKNCW
DTDRPGNSSNNSIHASLLAQHLASLLNHPAKSTVICRAVDQPTRTLQKILKPSNTLLNRL
SRLLKLTTAEDVALSLVLRRNSSKTEIVNLSKQHLKKRFLDLVQCYLDAERGHQVERAGL
QECSPEVLQTLLTNLAHENFRLAAVTKDLFLKKLRIDFPREVVPIVLAPLLYPDDTKTPL
EEMTTADDMAAAMMDNSLAEIIRDIGYSFTSSVEECKNNMLNFGAREPTATDVAKIISTM
VRYHTTVQDGPPIQTPGNFWVGHDVKKEPLSQGHGDSWNAEVLVQTLKDLASNLNWKEVI
LQLDHPEFFVADRQGLSLLFTILRLGLQSAGYPSNIFPVEYLCRRWTNLEGQMSLITNIL
KHPDIFSFADHPFHPVSIDLLKSPPEADNKDVATWRCLYLVELLLYASERGYYMQVQELF
KIPLQYCPDVLMLALLQISPPVNVVRQELFSTLIPIFLGNHPNSGIILHHAWHNQNPNIK
AVIMHSMAEWYIRGDCDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLK
LDKWLTDKIRDHGEAFVSSMVKFLQRRCPLVLGKGPEEQLPKAAQLPHETIATMLACLQL
CIPNVQQELQEAICNVIANCQTLILSKTRQSIAGIARPHTRVLETPFNPAGLGGQLFPPH
VDSITNLTPNVANMSLGAPANTAFAMPGTLGPLVTTPGSPSRLMGAGPNSPFAMMPLQHN
ANVANMGLARMVPAPAMDKPRIPDPIHFPEMMHNVAKEIEDEANGYFQRIYNHPPHPTLS
IDEVLDMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKGL
VPSYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEF
PPHLIEYVEYGLQSQEPPSKPQGAVLPTSLAAMLNQTAVVTVSAPYRAVAPPISVISKVA
NCTSGGMGSRPSIANATNIDTLLTATDREEKINAPPEPIQDKTAFIFNNLSQLNLQPKCE
ELKEILTDEYYPWLSQYLVMKRASIELNFHALYSNFLDVLKIREVNKMVTKETYRNIKVL
LRSDKGIANFSDRSLLKNLGHWLGMLTLARNKPILHVDIDLKALVLEAYHKGQQELLYVV
PFVAKVLESCAKSVVFKPPNPWTMALMNVLAELHQEPDLKLNLKFEIEVLCKNLGLDIAN
LKPAIYLKDPEKVRQIEFQLSQPKPNKEATAVVPVNPAIIQVPQMQMMPPPPPMIPTEDM
TVTAPTPTSGLMGDPNLMGVIGLPEPRFNYVDVNVSSTSAFGQKICFNPQILLFQNYPNL
KQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMMRNLT
AGMAMITCREQIISTISTNLKGAFATALMPSTPQQFLVFQKEIIESAAAVLATENMELAC
AFIQKTAVEKALPELDKRLLNDYEMRKLARQEGRRYYDPMVLSYQNDRLPERVRLRVGGP
TEVQITVYEEFACNIPGFTPIRDVGMFLLKPAQDQMSQLTFSQVINPSQVYGTDEMSALI
SAAEMFLANCIAVATLAVQGANMHSLLECLFLARRNRDFVSGCALLQKAVEGLLDGHIVQ
PGMSSEHVEMMARYRDIHLRVLKLLEDQRVYGHVWTSKQITCCITECREELRYNIEAVDC
LIRNHLVNLPQYDLAIAHLMDSGNNYMAVAFAMQLVQLYLVDDRNNIYVSEGDLFHTAET
LVRILSHSRQPPPEGLGSLIEMLRVNQDPSAYLGERSPLGPTAHIHSGILQVRAQNYDDP
PGLQEKTENLLREWRNVLLSPMTEIELAQNFNLYVHRMNMNGILKSDDMITRFFRIATQM
CVENVYQQLSEDRMNTPPIPPKRDKYYTMCDSFIKLVSLLIKNTPDGGNPTPKLNLLNKI
LGIIAGCLLQDHEEHGTNFQQLPYHRLLLILFLDMNMAEPVLESMNYQVLTAFCHTLRII
RPNIAPGFAYAWLEVVAHRAFINRVLAVTPQQKGWGMYSTLLIDLFKFLDPFLRNTELAT
PVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNMRLPDPF
TPNLKVDLLAEITLPPRAVINYNTIIPASQFKKDLDAYLKARAPVTFLSELRSNMQVLNE
PGRRYNCQLMNAVVLYVGTQAIAHIRSKGQTPNMSTIAHSAHMDIFQNFTVDFDFEGRYL
FLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWGLLIT
FIELIKNPIYKFWSHEFVHCAPEIEKLFASVARSCIVDKTGAGGGEREIAE
NT seq
7176 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaccctttaacgtttagcttatcgcaaatcaattatcttgttataaattta
agtaagaagaacttcaagcagacgaatcaagagttgtctcagctggttagtctatatggg
ctagaagcggaaaatcaactcttgaggtgtctgctcactgaggcagcgaagaactgttgg
gatactgatcgtccaggaaattcgtctaacaatagcatccacgcgtctttgctcgcgcag
catctagcatccttgctcaaccatccagcgaagtcgactgttatctgtcgcgctgtagac
caaccgaccagaacactacagaagatattaaaaccttcaaatactttactcaatcgactg
tcaagattgttaaagttaaccaccgcagaggatgttgccctttcgctggttctaaggagg
aactcgtcgaaaactgaaatcgtaaatttatccaaacaacatctcaaaaagagattttta
gatctcgtacagtgctacctcgacgcagaacgcggacatcaagtggagcgtgccggactt
caggaatgcagccctgaagtgttgcaaactcttcttactaatctcgcgcacgaaaatttt
cgtttagccgcagtgacaaaggacttatttttgaagaagttacgaatcgatttccctcgg
gaagtagtgccaatagtgctcgcgcccctgctgtatcccgacgatacaaagacgcctctt
gaggaaatgactacagcagacgacatggccgcagccatgatggacaactctctcgcagag
atcatccgagatatcggctattctttcacctcatccgttgaggaatgcaagaacaatatg
ttgaacttcggcgcccgagagcctacggctacggatgttgccaaaattatatcgactatg
gtgagataccacacgacagttcaagacgggccaccgatacagacacccggcaacttctgg
gtcggccacgatgtcaaaaaggagcctttgtcccaagggcatggcgactcgtggaacgca
gaagtattagttcaaacactaaaggatctagcctctaaccttaactggaaagaggtcatt
ctacaactggatcaccctgaatttttcgtcgctgacagacaaggcttgagcttgctgttc
acaatattgcgacttggccttcaaagtgcgggctacccgtcaaatatattcccggttgaa
tatttgtgccgtcgatggacaaatctagaaggtcagatgagcctcataactaacatactg
aagcacccagacatatttagttttgctgatcacccgtttcatccagtttctatcgattta
ctgaaatcacctcctgaagcggacaacaaagacgtagcgacctggcgttgcctttacctg
gttgaactactgctgtatgcttcagagcgtggctattacatgcaagtacaagaactattc
aagataccactacagtattgcccggatgtattgatgctggctttacttcaaattagtcca
cctgtcaatgtggttagacaagagttgttttcaaccctaataccaatatttttgggcaac
catcctaattcaggaatcattttacaccatgcttggcataatcaaaaccctaatatcaaa
gctgtgattatgcattcaatggcagaatggtacattcgtggagattgtgatcagtcaaaa
ctttcaaggatcttagacgtcgcacaggatttaaaggcgttgtccttattattgaatgtt
caatcgtttccttttgtgatcgaccttgcttgtctagcgtcccggagggaatacctaaag
cttgataaatggttaaccgacaaaattagggatcatggcgaagcctttgtctcctcgatg
gttaaattcttgcaaagaagatgcccattagtccttggtaaaggaccagaagagcagtta
ccaaaagcagctcagttaccgcacgaaacgattgctacgatgctggcatgcttacaatta
tgcattccgaatgttcaacaagagctacaggaggcgatctgcaatgtaattgctaactgc
cagactctcatactaagtaaaacacggcagagcattgcgggaattgcacgacctcacacc
agagtcttggaaacaccgttcaaccctgctggattaggtggtcaattattcccaccacat
gtggattccatcactaatttgactcccaatgtagcaaacatgagcttgggcgcaccagct
aacacagcgtttgcaatgcctggtaccttaggaccccttgtgactacgccagggtcgcct
tcgcggctcatgggtgctgggcctaatagcccgtttgcaatgatgcccttgcaacataac
gcaaatgtggctaatatgggattggccagaatggtccctgctccagcaatggataagcca
cgtattccagatccaattcacttccctgagatgatgcataatgttgccaaggaaattgag
gatgaagctaacggctattttcaaagaatctataaccatccgcctcatcccacgctgtcg
atagacgaagtgcttgatatgctgaaaaagtttcaagattcgccaaacaaacgagagcgt
gaggtattctcgtgtatgctgcgaaacctctttgaagaatacaaattctttcctcagtat
ccggacaaagaacttcacataactgcccaactcttcggcggaatcatagagaagggccta
gtacccagttacgtctcgcttggcctggctttaaggtttgttctggacgcgttacggaaa
ccagagggctctaaaatgtattactttggtatagcggctttggacagattcaagtcgcgc
ctcaaggactatcacaaatactgcgagcatgttagagctatacctcattttagtgaattc
cctccgcatctcatcgagtatgtagagtacggactccagagtcaagagccgccgtcgaaa
ccccaaggggctgtgttgccgactagcctggcagctatgttaaaccaaaccgcagttgta
actgtatcagctccgtatagagctgtcgccccacctatttcggtgatatcaaaagtggca
aattgcacgtcaggtggtatgggaagccgaccatccattgcgaacgccacgaacatcgac
acgctgctgacagctacggacagggaagagaaaatcaacgctccgcctgaacccattcaa
gacaaaacagcttttattttcaacaacttaagccagttaaacttacaacctaaatgcgaa
gagctcaaggaaatactcactgacgaatattatccctggctgtctcaatatctagtcatg
aagagagcttctatcgagctcaacttccatgcattatattccaatttccttgatgttctt
aaaattcgcgaggtcaacaagatggttacaaaggaaacttatcgtaacatcaaagtatta
ttgcgctcagataaaggcatagcaaacttttctgatcgttcattactgaagaatctcggt
cactggcttggcatgcttacgttagcacgtaacaaacctattctgcatgtcgatattgat
ctaaaagcactagtactcgaagcttatcataaaggccaacaggaactgctgtatgtagta
ccttttgtggccaaagttttagaatcatgcgctaaaagcgttgttttcaagcctcccaat
ccctggacgatggcattgatgaatgtactagccgagttacaccaggagccagatttaaaa
ctgaatttgaagttcgaaatagaagtactgtgcaagaatctaggcctagatatagctaat
ctgaaacctgccatttatttgaaagatcctgaaaaagtaaggcagatagaatttcaactg
tcgcagccgaaaccgaataaagaggcaacggcagtggtaccggttaacccagcaatcatc
caggttccgcaaatgcaaatgatgccacctccgcctcccatgataccgacggaggacatg
acagtcaccgcgcccacgcccaccagcggcctcatgggcgaccccaatctaatgggagtc
atcggcctgcctgagcctagattcaattatgtggacgttaatgtttcgtccacatctgca
ttcggccaaaagatatgcttcaatcctcagattctcttattccaaaactatccgaacttg
aaacagtttgtcaagcccgcgatcgagaggtcgatccaggaatggatccaccctgttgtg
gaccgatcaattaagtatgctttaactacgtgtgagcaaataataaggaaagacttcgcg
ttggatcctgatgaagtgagaatgcgaacctgcgcgcatcacatgatgcgaaacctgacc
gctggcatggcgatgatcacgtgtcgcgagcagatcattagcactatcagcaccaacctg
aagggtgctttcgcaaccgccctgatgccctccacaccccaacagtttctggtatttcag
aaggagattatagaaagcgcagctgctgttctagctaccgaaaatatggagttggcgtgc
gcgttcatccagaagactgcggtggagaaggcgctgcccgagctggacaagcgcctgctt
aacgactacgagatgcgcaagctcgcgcgccaggagggccgtcgctactacgaccctatg
gtgctctcctaccagaacgaccgcctgcccgaacgcgtccgtctccgcgtcggcggcccc
acagaagtccaaatcaccgtctacgaagaatttgcatgcaacatccccggcttcacgccc
attcgcgacgtcggaatgttcttgctcaaaccggctcaggatcaaatgtctcaactcacg
ttcagccaggtcatcaatccgagtcaggtgtacggcacggacgagatgagcgcgctgatc
tccgccgccgagatgttcctcgccaactgcatcgccgtcgccacgctcgccgtgcaggga
gctaacatgcactctctcctcgagtgcctcttcctcgcaagaagaaaccgcgactttgtg
tccggatgcgctttgctccagaaggcggtggaggggttgttggacgggcacatcgtgcag
ccgggcatgagcagcgagcacgtcgagatgatggctcgctaccgcgacatccacctgcgc
gtgctcaagctgctggaagaccagcgcgtgtacggacacgtgtggacctccaagcagatc
acctgctgcatcaccgagtgccgcgaggagctgcgctacaacatcgaggcggtcgactgc
ctcatcaggaaccatctggtcaacttgccacagtacgaccttgccatcgctcacttgatg
gacagcggcaacaactacatggctgttgcgttcgcgatgcaactggtgcaactgtacctc
gtagacgacaggaacaacatctacgtaagcgaaggcgacttgttccacactgctgagacg
ctggtcagaatcttgtcccactcccgccagcctccgcccgagggccttggatccctcatc
gaaatgctccgagtaaaccaagatcctagcgcctatttaggggaaaggtccccgttagga
ccaactgcacacatccactctggaatcctgcaagttagagcccagaattacgacgacccg
cccggtttacaagaaaagacggagaatcttctccgcgaatggagaaacgtgcttctcagc
ccaatgaccgaaatagaactcgctcagaatttcaacttgtatgtccatcgcatgaacatg
aacggaatccttaaatctgatgacatgatcacgagattttttagaattgctacgcagatg
tgcgttgagaacgtttatcaacagttgagcgaggataggatgaacactcctcccatacca
ccgaagagagacaaatactacacaatgtgcgactcattcataaaactggtttcgctcctt
atcaagaacacacctgatggcggcaatccgacgcccaagttgaacctcctaaacaagatt
ttaggcatcattgctggctgcttgctgcaagatcatgaagagcacggcacgaacttccag
cagctaccgtatcatcgtctactactcatcctattccttgatatgaatatggctgaaccc
gttttagaatcgatgaactatcaggttctaactgcattctgccatacccttcgtatcatt
cggcctaacatcgcgcctggcttcgcgtacgcgtggctcgaggtcgtagcgcatcgtgct
ttcattaaccgcgttctagcggtaacaccacagcagaagggctgggggatgtactccaca
cttctgatcgacttgttcaagttcctagatcctttccttcgcaacacagagctcgcgacg
cccgtcatgatgttatacaagggcacgttgaaggtgcttctcgtgcttttgcatgacttc
cctgagttcctgtgtgattatcactatggtttctgcgacgagatcccgccaaactgcatc
cagatgaggaacctcatcctgtctgcgttcccccgcaacatgcggctcccggatcccttc
actcctaacctgaaggtggatctacttgcggagatcacgctgccaccccgcgcagtgatc
aactacaacactatcatccctgcgtcacaattcaagaaggatttggatgcttacctgaag
gctcgcgcacctgtcacgttcctgtcagaactgaggagcaacatgcaggtgttgaacgag
cccggtcggcggtacaactgtcagcttatgaatgccgtggtgctatacgtcggaacgcag
gcgatcgcgcacattcgctccaagggacaaacacccaacatgtccaccatagcacattcc
gcgcacatggatatcttccagaatttcactgtagacttcgacttcgaaggacgataccta
ttcctgaacgcgatcgcgaaccagttgcggtaccctaacagccacacgcactacttctcg
tgctgcctcctatacctattcgccgaggccaattctgaggccgtacaggaacaaatcacg
aggatgctgctcgaacgactcatcgtcaaccgcccccacccctggggcctactcatcacc
ttcatcgaactcatcaagaacccaatctacaaattctggtcgcacgagtttgttcattgc
gcacctgagatcgagaagttatttgcatcagtggcacgatcctgcattgtagacaagacg
ggtgcgggagggggggaaagagagatagccgagtag
DBGET
integrated database retrieval system
