Idiomarina abyssalis: K5X84_01585
Help
Entry
K5X84_01585 CDS
T07548
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
iab
Idiomarina abyssalis
Pathway
iab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
iab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X84_01585 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
iab03021
]
K5X84_01585 (rpoB)
03400 DNA repair and recombination proteins [BR:
iab03400
]
K5X84_01585 (rpoB)
Enzymes [BR:
iab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X84_01585 (rpoB)
Transcription machinery [BR:
iab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X84_01585 (rpoB)
DNA repair and recombination proteins [BR:
iab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X84_01585 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QZN91240
LinkDB
All DBs
Position
308610..312638
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVDPEANNGLEAAFRSVFPIA
SYSGNAELQYVSYHMGEPAFDVEECQIRGITYSAPLRVKLRLVLFDKEAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNARVIPYR
GSWLDFEFDPKDNVFVRIDRRRKLPASIILRALEYSTEEILDMFFDTTYFEILKTKVKMQ
LVPERLRGETAKFDIKGAEGEVLVEKGRRITARHIRQLEQLGIKEMEVPAEYMVGKVLAK
DYADKKTGEVVGHANDVLTLELIAELSEAGIKKIETLFVNDLDHGPYMSETLRVDSSNNR
LEALVEIYRMMRPGEPPTREAAETLFDNLFFSEERYDLSTVGRMKFNRRLGRDDLSGDNT
LSREDIVDVMKKLIEIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFSRTNEYGFLETPYRRIENGVV
TDDVNYLSAIEEGNYVIAQANVGLNDKGELTEDLVPCRHKNEFTLMSKEQVQYMDVAPQQ
IVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTIAVDSGVTVVAK
RGGVVDYVDASRIVVKVNEEEMVPGEAGIDIYNLTKYTRSNQNTCINQKPTVNPGEPVTR
GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILISERVAQEDRMTTIHIQELNCV
ARDTKLGAEEITSDIPNVGESALGKLDESGVVYVGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIEEMQLAKVKKD
LTEEFKILEEGIYNRARNLLLSNGFDEAKLASVDRASWLTQDLGNEDAQAQLEQIAEQYQ
QIRDDFDTKFETKRRKITQGDDLAPGVLKIVKVYLAVRRSIQPGDKLAGRHGNKGVISTI
IPVEDMPHDDEGNPVDIVLNPLGVPSRMNIGQILETHLGMAARGIGSKIDKMLKQQRAIK
ELRDFLQQVYDLGECRQKVDISEFSDDEVMRLAGNLKAGLPTATPVFDGAVEEEIKALLK
LADLPESGQIPLFDGRTGDKFERDVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDNNLQMEAGMP
ESFNVLLKEIRSLGINIELEQN
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcctactctgaaaaaaaacgtattcgtaaggatttcggtaaacgacctcag
gtcttagaagttccttatttgctgtctatgcagcttgattcatttaagaaatttattgaa
gtcgatccagaagccaataatggtctggaagcggcttttcgttcggtttttcctattgcc
agttattctggtaatgcggaactgcagtacgtcagttatcacatgggtgagccggcgttt
gacgttgaagaatgtcaaatccgtggcattacctactcagcaccattgcgtgtgaaactg
cgtctggtgctgtttgataaagaagcagctgccggtacagttaaagacattaaagaacaa
gaagtgtacatgggcgaaattccgttaatgacagaaaacggaaccttcgttatcaatggc
acagagcgagttatcgtttctcagctccaccgttcacctggtgtgttctttgatcacgat
aaaggtaaatctcactcgtcaggtaaagtcttgtataacgcgcgtgttattccttaccgt
ggctcttggttggattttgaatttgatcctaaagacaacgtttttgtacgtatcgaccgt
cgtcgtaaattaccggcgtctattattcttcgtgcattggaatacagcactgaagaaatc
ctcgatatgttcttcgacactacttacttcgagatccttaaaactaaggtgaagatgcag
ttagtgcctgagcgtctgcgtggcgaaaccgccaagtttgacattaaaggcgctgaaggc
gaagttttggtcgaaaaaggccgtcgtatcaccgcacgccatattcgccagcttgaacag
ctgggtattaaagaaatggaagtgccggctgaatacatggttggaaaagtattagcgaaa
gactatgccgacaagaaaaccggcgaagttgttggccatgctaacgatgtgctgactctt
gagcttatcgctgagcttagcgaagctggtattaagaaaattgaaacgctgttcgtcaat
gatttggaccatggtccatacatgagcgaaaccttgcgtgtagattcaagtaacaatcgc
ttagaagccttagttgaaatctaccgcatgatgcgcccgggcgagccaccaacgcgtgaa
gctgcagaaactctgtttgataacttgttcttcagtgaagaacgctacgatttatcaaca
gtcggtcgcatgaagtttaatcgtcgtttaggtcgtgatgacttaagtggtgataatacg
ttatccagagaagacatcgttgatgtcatgaaaaagctcatcgaaatccgtaacggttta
gatgaagttgatgacattgaccacttgggtaaccgccgtatccgttcagtcggtgaaatg
gcagaaaaccaattccgtgttggtttggtacgtgtagaacgtgcagtaaaagaacgcttg
tcgctgggtgatttagataacaccatgccacaggatcttatcaacgcgaagccaattagt
gccgcggttaaagagttctttggctcaagccagctgtcgcaattcatggaccaaaacaac
ccattgtcagaagtgacgcacaaacgtcgtatctctgcgttaggtccgggtggtttgact
cgtgaacgtgcaggcttcgaagttcgtgacgtacacccaacgcactatggtcgtttgtgc
ccaatcgaaacgccggaaggaccgaacatcggtctgattaactcgctgtctacgttctcg
cgtaccaacgaatatggctttttagaaacgccttatcgtcgtatagagaatggtgttgta
acagacgatgttaattacttgtcggctattgaagaaggcaactatgttatcgctcaggcg
aacgtagggctgaacgacaaaggcgaattgacagaagatttagtgccatgccgtcataaa
aacgaatttacgctgatgagtaaagagcaggtccagtacatggatgttgcaccacagcag
atcgtttctattgcagcaagcatgattccgttcctggaacacgatgatgctaaccgagct
ttgatgggctcgaacatgcaacgtcaggctgtaccgactttacgcgctgataagccgtta
gttggtactggtatcgaacgcacaatcgcagttgactccggtgttaccgttgttgctaag
cgtggcggtgtggtcgactacgtagatgccagtcgtatcgttgttaaggttaacgaagaa
gagatggttccgggtgaagcgggcatcgacatttataacctgaccaaatacacgcgttct
aaccagaacacttgtattaaccagaaaccgactgtgaatccaggcgaacctgtgactcgc
ggtgacgttttagctgacggtccgtcaactgacttaggtgaactcgcactgggtcagaac
atgcgcgtggccttcatgccttggaatggttataacttcgaggattcgattctgatttct
gagcgcgtagcgcaagaagatcggatgacaaccatccatattcaagaattaaactgtgtt
gctcgtgataccaaattgggtgctgaggaaattacctctgatataccaaacgttggtgaa
tctgcattaggcaagctggatgagtccggtgttgtttatgtcggtgcagaagttaacggc
ggcgacattctggttggtaaagtaacgcctaaaggtgaaactcagttaacgcctgaagag
aagcttttgagagcaatcttcggtgagaaagcgtctgatgttaaagacagctcactgcgt
gttccaaatggtgttaacggtactgttattgacgtgcaagtattcactcgtgacggcgta
gaaaaagacaagcgtgcggtagcgattgaagaaatgcagctggctaaggttaagaaagac
ctgacagaagaatttaagattcttgaagaaggtatttacaaccgtgctcgtaacctgttg
ctaagtaatggctttgatgaagccaagctggcaagtgtggatcgtgcaagctggttaact
caagacttaggtaacgaagacgctcaggctcaacttgagcaaattgctgagcagtatcag
caaattcgcgatgacttcgacactaagtttgagactaaacgtcgcaagatcactcaaggc
gatgatttagcgccgggtgttctgaaaatcgttaaagtttacttagcagtccgtcgtagc
attcagcctggtgataagctggctggccgtcacggtaacaaaggtgttatctcaactatc
atccctgtggaagacatgccgcacgatgatgaaggtaacccagtagatatcgtattgaac
ccgttgggtgtaccttcgcggatgaacatcggtcagattctggaaacccacttaggtatg
gctgcgcgcggtatcggtagcaagattgataagatgctgaaacagcagcgtgctatcaaa
gaactgcgtgatttcttacagcaagtgtatgacttaggcgaatgtcgccagaaagtcgac
attagtgagttctctgatgatgaagtcatgcgcttagccggtaacttgaaagcgggtctg
cctactgctacaccagtatttgatggtgcagtggaagaagagattaaagcgttgttgaag
ctggcagacttacctgaatcaggtcagattccgttatttgacggtcgtaccggtgataaa
tttgaacgtgacgtaactgtcggttacatgtacatgctcaaattgaaccacttggttgac
gataagatgcacgcacgttcaactggctcgtacagcttggttactcaacaaccactgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tatggtgcggcttataccttgcaagaaatgttgacagttaagtcggacgacgtgaacggt
cgtacgaagatgtacaaaaacattgtcgacaacaacttgcagatggaagcgggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctagaa
cagaactaa
DBGET
integrated database retrieval system
